Wall clock time and date at job start Fri Apr 10 2020 14:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32276 * 120.24863 * 2 1 4 4 C 1.31912 * 122.34133 * 180.02562 * 3 2 1 5 5 N 1.36986 * 118.70520 * 180.02562 * 4 3 2 6 6 C 1.38687 * 119.99636 * 0.02562 * 5 4 3 7 7 N 1.33150 * 118.67737 * 0.02562 * 6 5 4 8 8 C 1.31638 * 121.56499 * 180.02562 * 7 6 5 9 9 C 1.50700 * 120.76526 * 179.97438 * 8 7 6 10 10 C 1.40753 * 118.46843 * 0.02562 * 8 7 6 11 11 C 1.40077 * 122.15511 * 179.97438 * 10 8 7 12 12 C 1.36575 * 119.85969 * 180.02562 * 11 10 8 13 13 C 1.39466 * 120.71816 * 359.96812 * 12 11 10 14 14 C 1.36577 * 120.78758 * 0.02562 * 13 12 11 15 15 C 1.40107 * 119.96161 * 0.03156 * 14 13 12 16 16 N 1.31819 * 118.67231 * 179.73273 * 6 5 4 17 17 C 1.51519 * 109.51149 * 179.97438 * 13 12 11 18 18 C 1.54286 * 105.23041 * 342.63249 * 17 13 12 19 19 C 1.51502 * 129.73868 * 179.97438 * 12 11 10 20 20 N 1.35949 * 122.59191 * 0.02562 * 4 3 2 21 21 H 0.97001 * 119.97166 * 180.27316 * 20 4 3 22 22 C 1.35159 * 120.06079 * 359.97438 * 20 4 3 23 23 O 1.21756 * 121.09487 * 179.97438 * 22 20 4 24 24 C 1.40675 * 120.24677 * 180.02562 * 2 1 3 25 25 C 1.40619 * 121.15749 * 359.95783 * 24 2 1 26 26 H 1.08012 * 119.99624 * 324.52334 * 25 24 2 27 27 C 1.39892 * 120.00751 * 144.52741 * 25 24 2 28 28 N 1.30973 * 119.99469 * 339.38907 * 27 25 24 29 29 Si 1.86791 * 120.00501 * 159.38890 * 27 25 24 30 30 H 1.48503 * 109.47307 * 0.02562 * 29 27 25 31 31 H 1.48501 * 109.47387 * 119.99942 * 29 27 25 32 32 H 1.48505 * 109.47106 * 239.99807 * 29 27 25 33 33 H 1.08996 * 109.47069 * 269.97641 * 1 2 3 34 34 H 1.09005 * 109.47087 * 29.97165 * 1 2 3 35 35 H 1.09004 * 109.47341 * 149.97318 * 1 2 3 36 36 H 0.96997 * 120.00043 * 180.02562 * 5 4 3 37 37 H 1.08997 * 109.46957 * 89.99178 * 9 8 7 38 38 H 1.08994 * 109.47296 * 209.99956 * 9 8 7 39 39 H 1.09001 * 109.47001 * 329.99848 * 9 8 7 40 40 H 1.08001 * 120.07027 * 359.97438 * 11 10 8 41 41 H 1.08000 * 120.01748 * 180.02562 * 14 13 12 42 42 H 1.08997 * 110.29221 * 101.56721 * 17 13 12 43 43 H 1.08996 * 110.29367 * 223.69328 * 17 13 12 44 44 H 1.09000 * 110.78964 * 268.44362 * 18 17 13 45 45 H 1.08997 * 110.79301 * 144.98184 * 18 17 13 46 46 H 1.08991 * 110.29167 * 316.30152 * 19 12 11 47 47 H 1.08996 * 110.29075 * 78.42708 * 19 12 11 48 48 H 0.96993 * 119.99687 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1733 1.1427 0.0000 4 6 3.4916 1.1908 -0.0005 5 7 4.1052 2.4156 0.0001 6 6 3.3420 3.5735 0.0017 7 7 2.0150 3.4641 0.0032 8 6 1.2360 4.5253 0.0043 9 6 -0.2640 4.3805 0.0054 10 6 1.8365 5.7983 0.0033 11 6 1.0820 6.9785 0.0038 12 6 1.7136 8.1894 0.0022 13 6 3.1062 8.2665 0.0008 14 6 3.8691 7.1337 0.0004 15 6 3.2531 5.8753 0.0008 16 7 3.9595 4.7381 0.0076 17 6 3.5325 9.7205 -0.0014 18 6 2.2827 10.5086 -0.4455 19 6 1.1287 9.5869 0.0018 20 7 4.2652 0.0729 -0.0016 21 1 5.2319 0.1526 0.0021 22 6 3.6886 -1.1495 -0.0016 23 8 4.3633 -2.1630 -0.0030 24 6 2.2156 -1.2152 -0.0005 25 6 1.5426 -2.4499 -0.0002 26 1 0.6156 -2.5595 0.5433 27 6 2.0735 -3.5363 -0.7036 28 7 2.9379 -3.3336 -1.6665 29 14 1.5498 -5.2760 -0.2697 30 1 0.5702 -5.2344 0.8457 31 1 0.9228 -5.9144 -1.4548 32 1 2.7395 -6.0623 0.1447 33 1 -0.3633 -0.0004 1.0276 34 1 -0.3633 0.8903 -0.5134 35 1 -0.3634 -0.8898 -0.5143 36 1 5.0735 2.4729 -0.0006 37 1 -0.6248 4.3450 1.0333 38 1 -0.7116 5.2316 -0.5077 39 1 -0.5405 3.4599 -0.5087 40 1 0.0030 6.9310 0.0045 41 1 4.9465 7.2079 -0.0003 42 1 3.8365 10.0268 0.9995 43 1 4.3475 9.8744 -0.7086 44 1 2.2743 10.6432 -1.5272 45 1 2.2297 11.4700 0.0654 46 1 0.3002 9.6497 -0.7036 47 1 0.7946 9.8571 1.0035 48 1 3.3063 -4.0868 -2.1540 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014165337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:35 Heat of formation + Delta-G solvation = 91.893982 kcal Electronic energy + Delta-G solvation = -33578.683177 eV Core-core repulsion = 29213.369985 eV Total energy + Delta-G solvation = -4365.313193 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.159 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.28440 -39.89262 -39.09480 -36.89849 -35.40702 -34.78234 -34.51358 -33.33377 -32.45826 -31.19381 -29.87078 -29.79336 -27.90550 -27.63254 -27.20097 -24.88513 -23.79885 -22.91093 -21.71955 -21.38614 -21.04130 -20.76395 -18.45965 -18.10181 -17.55197 -16.65469 -16.56929 -16.31065 -15.86547 -15.34182 -15.27899 -15.22584 -14.91177 -14.48390 -14.30282 -14.08467 -13.63633 -13.19927 -13.12512 -13.10837 -13.03428 -12.74226 -12.31725 -12.27698 -12.11500 -12.09442 -11.89861 -11.74558 -11.54908 -11.44725 -11.35660 -11.24641 -11.23693 -10.91657 -10.73794 -10.49556 -10.44258 -10.37262 -9.62802 -9.38368 -9.03350 -8.81386 -8.63753 -8.62248 -7.96068 -7.78733 -7.09315 -6.63865 -4.19251 0.45792 0.98641 2.03893 2.31292 2.80333 3.01684 3.07491 3.10976 3.14477 3.59231 3.87263 4.11951 4.16043 4.27899 4.33744 4.43485 4.57814 4.60986 4.72731 4.81227 4.83581 5.02296 5.21290 5.33090 5.41644 5.42858 5.45539 5.52006 5.56060 5.58424 5.66663 5.70448 5.81498 5.86402 5.87778 5.99944 6.07675 6.11084 6.20602 6.42476 6.50470 6.71368 6.73722 6.79958 6.86688 6.90011 6.95813 7.09168 7.44325 7.48638 7.60381 7.90525 7.98435 8.25288 8.52257 8.59015 8.71275 9.42970 9.72295 10.02041 Molecular weight = 377.16amu Principal moments of inertia in cm(-1) A = 0.023783 B = 0.002014 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.034496 B =13902.020046 C =14898.932002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.071 4.071 3 N -0.422 5.422 4 C 0.395 3.605 5 N -0.599 5.599 6 C 0.576 3.424 7 N -0.470 5.470 8 C 0.245 3.755 9 C -0.107 4.107 10 C -0.208 4.208 11 C -0.045 4.045 12 C -0.133 4.133 13 C -0.052 4.052 14 C -0.115 4.115 15 C 0.213 3.787 16 N -0.584 5.584 17 C -0.085 4.085 18 C -0.121 4.121 19 C -0.077 4.077 20 N -0.642 5.642 21 H 0.385 0.615 22 C 0.530 3.470 23 O -0.532 6.532 24 C -0.007 4.007 25 C -0.395 4.395 26 H 0.095 0.905 27 C 0.074 3.926 28 N -0.735 5.735 29 Si 0.914 3.086 30 H -0.257 1.257 31 H -0.273 1.273 32 H -0.270 1.270 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.419 0.581 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 22.131 1.758 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.196 4.196 3 N -0.144 5.144 4 C 0.050 3.950 5 N -0.230 5.230 6 C 0.219 3.781 7 N -0.187 5.187 8 C 0.081 3.919 9 C -0.164 4.164 10 C -0.214 4.214 11 C -0.065 4.065 12 C -0.134 4.134 13 C -0.055 4.055 14 C -0.134 4.134 15 C 0.082 3.918 16 N -0.311 5.311 17 C -0.122 4.122 18 C -0.158 4.158 19 C -0.114 4.114 20 N -0.291 5.291 21 H 0.220 0.780 22 C 0.324 3.676 23 O -0.408 6.408 24 C -0.017 4.017 25 C -0.424 4.424 26 H 0.113 0.887 27 C -0.151 4.151 28 N -0.356 5.356 29 Si 0.737 3.263 30 H -0.181 1.181 31 H -0.199 1.199 32 H -0.195 1.195 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.257 0.743 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.183 20.933 1.557 21.231 hybrid contribution 1.177 -0.793 0.147 1.427 sum -2.007 20.140 1.705 20.311 Atomic orbital electron populations 1.19901 0.90460 1.00500 0.99344 1.20342 0.94882 0.85758 1.18643 1.67031 1.01211 1.29487 1.16684 1.17551 0.86518 0.78210 1.12730 1.40287 1.07979 1.00285 1.74472 1.18906 0.85438 0.84702 0.89023 1.68498 1.03355 1.31107 1.15715 1.22129 0.97196 0.86397 0.86218 1.20803 0.87668 1.04193 1.03742 1.19134 0.95223 0.95438 1.11653 1.20293 0.99408 0.89967 0.96852 1.20238 0.94195 0.94714 1.04274 1.20360 0.93983 0.94772 0.96374 1.19911 0.99991 0.88841 1.04695 1.18260 0.88811 0.91625 0.93055 1.68018 1.39252 0.96714 1.27085 1.21127 0.98575 0.90225 1.02260 1.22266 0.93995 0.98073 1.01469 1.21006 0.98102 0.90482 1.01850 1.44087 1.09696 1.06587 1.68767 0.77982 1.19284 0.90251 0.80430 0.77589 1.90730 1.65651 1.32873 1.51541 1.20189 0.88633 0.94940 0.97889 1.19296 1.06518 0.93240 1.23316 0.88692 1.25989 0.93572 1.02038 0.93542 1.69772 1.18498 1.34935 1.12361 0.86163 0.79517 0.80946 0.79631 1.18068 1.19862 1.19528 0.94452 0.93583 0.92214 0.74334 0.89488 0.90465 0.88909 0.85376 0.85244 0.89902 0.90446 0.90936 0.90606 0.90786 0.90402 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.91 9.68 36.01 0.35 -0.57 16 2 C -0.07 -1.72 6.89 -81.48 -0.56 -2.28 16 3 N -0.42 -9.80 7.27 -9.34 -0.07 -9.87 16 4 C 0.40 8.56 8.42 -320.98 -2.70 5.86 16 5 N -0.60 -11.03 5.48 -14.59 -0.08 -11.11 16 6 C 0.58 10.90 8.36 -322.41 -2.70 8.21 16 7 N -0.47 -8.93 7.39 -9.69 -0.07 -9.00 16 8 C 0.24 3.79 6.90 -81.73 -0.56 3.22 16 9 C -0.11 -1.22 9.80 36.01 0.35 -0.86 16 10 C -0.21 -3.00 5.74 -106.87 -0.61 -3.61 16 11 C -0.04 -0.50 9.33 -39.49 -0.37 -0.87 16 12 C -0.13 -1.37 6.06 -104.37 -0.63 -2.00 16 13 C -0.05 -0.55 6.06 -104.36 -0.63 -1.19 16 14 C -0.11 -1.49 10.00 -39.48 -0.39 -1.88 16 15 C 0.21 3.35 6.61 -84.89 -0.56 2.79 16 16 N -0.58 -10.24 10.46 -11.91 -0.12 -10.37 16 17 C -0.08 -0.63 6.76 -26.81 -0.18 -0.81 16 18 C -0.12 -0.73 7.06 -25.37 -0.18 -0.91 16 19 C -0.08 -0.54 6.77 -26.80 -0.18 -0.73 16 20 N -0.64 -14.07 5.30 -13.71 -0.07 -14.14 16 21 H 0.39 7.14 8.80 -40.82 -0.36 6.78 16 22 C 0.53 13.85 7.48 -12.34 -0.09 13.75 16 23 O -0.53 -15.10 15.07 5.14 0.08 -15.02 16 24 C -0.01 -0.18 5.55 -104.33 -0.58 -0.76 16 25 C -0.40 -10.14 7.81 -38.06 -0.30 -10.44 16 26 H 0.10 2.27 7.42 -52.48 -0.39 1.88 16 27 C 0.07 1.86 4.62 -17.30 -0.08 1.78 16 28 N -0.74 -19.57 11.17 55.55 0.62 -18.95 16 29 Si 0.91 18.79 29.61 -169.99 -5.03 13.76 16 30 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 31 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 32 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.22 7.03 -51.93 -0.37 0.85 16 36 H 0.42 6.40 8.80 -40.82 -0.36 6.04 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.65 6.57 -51.93 -0.34 0.31 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.13 1.08 6.51 -52.49 -0.34 0.74 16 41 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.29 6.99 8.30 -40.82 -0.34 6.65 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -33.17 395.86 -15.34 -48.51 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.94 Total: 11.51 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: -10.62 Total: 8.71 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: 0.20 Total: -73.44 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.08 Total: -15.02 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.17 -15.34 -48.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014165337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.407 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds