Wall clock time and date at job start Fri Apr 10 2020 14:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32276 * 120.24863 * 2 1 4 4 C 1.31912 * 122.34133 * 180.02562 * 3 2 1 5 5 N 1.36986 * 118.70520 * 180.02562 * 4 3 2 6 6 C 1.38687 * 119.99636 * 0.02562 * 5 4 3 7 7 N 1.33150 * 118.67737 * 0.02562 * 6 5 4 8 8 C 1.31638 * 121.56499 * 180.02562 * 7 6 5 9 9 C 1.50700 * 120.76526 * 179.97438 * 8 7 6 10 10 C 1.40753 * 118.46843 * 0.02562 * 8 7 6 11 11 C 1.40077 * 122.15511 * 179.97438 * 10 8 7 12 12 C 1.36575 * 119.85969 * 180.02562 * 11 10 8 13 13 C 1.39466 * 120.71816 * 359.96812 * 12 11 10 14 14 C 1.36577 * 120.78758 * 0.02562 * 13 12 11 15 15 C 1.40107 * 119.96161 * 0.03156 * 14 13 12 16 16 N 1.31819 * 118.67231 * 179.73273 * 6 5 4 17 17 C 1.51519 * 109.51149 * 179.97438 * 13 12 11 18 18 C 1.54286 * 105.23041 * 342.63249 * 17 13 12 19 19 C 1.51502 * 129.73868 * 179.97438 * 12 11 10 20 20 N 1.35949 * 122.59191 * 0.02562 * 4 3 2 21 21 H 0.97001 * 119.97166 * 180.27316 * 20 4 3 22 22 C 1.35159 * 120.06079 * 359.97438 * 20 4 3 23 23 O 1.21756 * 121.09487 * 179.97438 * 22 20 4 24 24 C 1.40675 * 120.24677 * 180.02562 * 2 1 3 25 25 C 1.40619 * 121.15749 * 359.95783 * 24 2 1 26 26 H 1.08012 * 119.99624 * 324.52334 * 25 24 2 27 27 C 1.39892 * 120.00751 * 144.52741 * 25 24 2 28 28 N 1.30973 * 119.99469 * 339.38907 * 27 25 24 29 29 Si 1.86791 * 120.00501 * 159.38890 * 27 25 24 30 30 H 1.48503 * 109.47307 * 0.02562 * 29 27 25 31 31 H 1.48501 * 109.47387 * 119.99942 * 29 27 25 32 32 H 1.48505 * 109.47106 * 239.99807 * 29 27 25 33 33 H 1.08996 * 109.47069 * 269.97641 * 1 2 3 34 34 H 1.09005 * 109.47087 * 29.97165 * 1 2 3 35 35 H 1.09004 * 109.47341 * 149.97318 * 1 2 3 36 36 H 0.96997 * 120.00043 * 180.02562 * 5 4 3 37 37 H 1.08997 * 109.46957 * 89.99178 * 9 8 7 38 38 H 1.08994 * 109.47296 * 209.99956 * 9 8 7 39 39 H 1.09001 * 109.47001 * 329.99848 * 9 8 7 40 40 H 1.08001 * 120.07027 * 359.97438 * 11 10 8 41 41 H 1.08000 * 120.01748 * 180.02562 * 14 13 12 42 42 H 1.08997 * 110.29221 * 101.56721 * 17 13 12 43 43 H 1.08996 * 110.29367 * 223.69328 * 17 13 12 44 44 H 1.09000 * 110.78964 * 268.44362 * 18 17 13 45 45 H 1.08997 * 110.79301 * 144.98184 * 18 17 13 46 46 H 1.08991 * 110.29167 * 316.30152 * 19 12 11 47 47 H 1.08996 * 110.29075 * 78.42708 * 19 12 11 48 48 H 0.96993 * 119.99687 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1733 1.1427 0.0000 4 6 3.4916 1.1908 -0.0005 5 7 4.1052 2.4156 0.0001 6 6 3.3420 3.5735 0.0017 7 7 2.0150 3.4641 0.0032 8 6 1.2360 4.5253 0.0043 9 6 -0.2640 4.3805 0.0054 10 6 1.8365 5.7983 0.0033 11 6 1.0820 6.9785 0.0038 12 6 1.7136 8.1894 0.0022 13 6 3.1062 8.2665 0.0008 14 6 3.8691 7.1337 0.0004 15 6 3.2531 5.8753 0.0008 16 7 3.9595 4.7381 0.0076 17 6 3.5325 9.7205 -0.0014 18 6 2.2827 10.5086 -0.4455 19 6 1.1287 9.5869 0.0018 20 7 4.2652 0.0729 -0.0016 21 1 5.2319 0.1526 0.0021 22 6 3.6886 -1.1495 -0.0016 23 8 4.3633 -2.1630 -0.0030 24 6 2.2156 -1.2152 -0.0005 25 6 1.5426 -2.4499 -0.0002 26 1 0.6156 -2.5595 0.5433 27 6 2.0735 -3.5363 -0.7036 28 7 2.9379 -3.3336 -1.6665 29 14 1.5498 -5.2760 -0.2697 30 1 0.5702 -5.2344 0.8457 31 1 0.9228 -5.9144 -1.4548 32 1 2.7395 -6.0623 0.1447 33 1 -0.3633 -0.0004 1.0276 34 1 -0.3633 0.8903 -0.5134 35 1 -0.3634 -0.8898 -0.5143 36 1 5.0735 2.4729 -0.0006 37 1 -0.6248 4.3450 1.0333 38 1 -0.7116 5.2316 -0.5077 39 1 -0.5405 3.4599 -0.5087 40 1 0.0030 6.9310 0.0045 41 1 4.9465 7.2079 -0.0003 42 1 3.8365 10.0268 0.9995 43 1 4.3475 9.8744 -0.7086 44 1 2.2743 10.6432 -1.5272 45 1 2.2297 11.4700 0.0654 46 1 0.3002 9.6497 -0.7036 47 1 0.7946 9.8571 1.0035 48 1 3.3063 -4.0868 -2.1540 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014165337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:33 Heat of formation + Delta-G solvation = 76.338348 kcal Electronic energy + Delta-G solvation = -33579.357720 eV Core-core repulsion = 29213.369985 eV Total energy + Delta-G solvation = -4365.987736 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.159 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.46695 -41.62419 -40.16366 -38.56232 -37.02821 -36.09099 -35.85628 -34.82147 -34.12152 -32.18462 -31.53554 -30.90436 -29.43633 -28.83809 -28.05349 -26.56682 -24.98588 -24.20039 -23.19130 -22.82919 -22.28878 -21.63966 -20.18438 -19.49571 -19.00503 -18.30467 -18.01597 -17.49591 -17.06141 -16.83482 -16.64764 -16.51350 -16.19762 -15.90753 -15.55422 -15.35581 -15.02578 -14.82504 -14.36991 -14.11469 -14.01059 -13.78051 -13.71763 -13.65719 -13.37781 -13.20718 -13.06352 -13.01470 -12.91721 -12.87118 -12.63947 -12.41251 -12.34492 -12.02628 -11.95789 -11.81851 -11.60696 -11.54388 -11.18842 -10.90195 -10.81494 -10.59140 -10.28107 -9.68061 -9.56288 -9.08257 -8.80460 -8.42107 -6.05790 -0.64174 -0.15089 0.48990 0.99637 1.24707 1.37834 1.44921 1.54105 1.62524 2.09031 2.20780 2.51972 2.77379 3.11426 3.16180 3.38286 3.48210 3.53243 3.55693 3.72865 4.03092 4.12716 4.14543 4.19098 4.28831 4.37978 4.52547 4.61722 4.68406 4.80559 4.84543 4.90067 4.94598 4.99085 5.03324 5.07229 5.12603 5.16061 5.17642 5.19423 5.26352 5.27173 5.32567 5.41948 5.46181 5.57979 5.63792 5.69726 5.81715 5.92970 6.02079 6.20757 6.29800 6.54364 6.72753 6.79586 7.36662 7.51414 7.88840 8.29125 Molecular weight = 377.16amu Principal moments of inertia in cm(-1) A = 0.023783 B = 0.002014 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.034496 B =13902.020046 C =14898.932002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.058 4.058 3 N -0.443 5.443 4 C 0.434 3.566 5 N -0.601 5.601 6 C 0.556 3.444 7 N -0.511 5.511 8 C 0.237 3.763 9 C -0.104 4.104 10 C -0.211 4.211 11 C -0.050 4.050 12 C -0.124 4.124 13 C -0.045 4.045 14 C -0.134 4.134 15 C 0.176 3.824 16 N -0.588 5.588 17 C -0.087 4.087 18 C -0.116 4.116 19 C -0.077 4.077 20 N -0.632 5.632 21 H 0.401 0.599 22 C 0.513 3.487 23 O -0.565 6.565 24 C -0.052 4.052 25 C -0.435 4.435 26 H 0.100 0.900 27 C 0.032 3.968 28 N -0.789 5.789 29 Si 0.980 3.020 30 H -0.245 1.245 31 H -0.260 1.260 32 H -0.281 1.281 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.431 0.569 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.162 0.838 41 H 0.132 0.868 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.644 27.122 2.330 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.182 4.182 3 N -0.166 5.166 4 C 0.085 3.915 5 N -0.236 5.236 6 C 0.198 3.802 7 N -0.229 5.229 8 C 0.076 3.924 9 C -0.160 4.160 10 C -0.217 4.217 11 C -0.070 4.070 12 C -0.125 4.125 13 C -0.048 4.048 14 C -0.153 4.153 15 C 0.048 3.952 16 N -0.314 5.314 17 C -0.124 4.124 18 C -0.153 4.153 19 C -0.114 4.114 20 N -0.280 5.280 21 H 0.238 0.762 22 C 0.310 3.690 23 O -0.445 6.445 24 C -0.061 4.061 25 C -0.465 4.465 26 H 0.118 0.882 27 C -0.187 4.187 28 N -0.412 5.412 29 Si 0.801 3.199 30 H -0.168 1.168 31 H -0.184 1.184 32 H -0.207 1.207 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.271 0.729 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.179 0.821 41 H 0.150 0.850 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.109 0.891 47 H 0.113 0.887 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.258 26.044 2.134 26.655 hybrid contribution 1.877 -1.481 0.022 2.391 sum -3.381 24.563 2.156 24.888 Atomic orbital electron populations 1.19920 0.88142 1.01085 1.00510 1.21037 0.96720 0.85534 1.14895 1.67298 1.01585 1.28736 1.19022 1.18031 0.86554 0.79067 1.07803 1.40186 1.08586 0.99276 1.75561 1.19024 0.85926 0.84876 0.90369 1.68427 1.03528 1.33083 1.17850 1.22813 0.98690 0.86155 0.84783 1.20949 0.85005 1.05071 1.05006 1.19371 0.94922 0.96398 1.11006 1.20611 1.00948 0.89017 0.96400 1.20818 0.94194 0.96236 1.01249 1.20886 0.94448 0.95920 0.93594 1.20047 1.00574 0.88718 1.05985 1.18756 0.89997 0.91839 0.94573 1.67978 1.39901 0.96952 1.26581 1.21289 0.99818 0.87804 1.03467 1.22320 0.92330 0.98643 1.02046 1.21151 0.98856 0.87969 1.03394 1.43991 1.10797 1.06017 1.67191 0.76165 1.19509 0.90708 0.80848 0.77973 1.90681 1.66262 1.34064 1.53486 1.20474 0.88838 0.96145 1.00672 1.19389 1.07627 0.94028 1.25433 0.88235 1.26820 0.93333 1.05761 0.92822 1.69848 1.21408 1.35655 1.14338 0.85182 0.78772 0.75966 0.79975 1.16806 1.18448 1.20682 0.92794 0.92047 0.92403 0.72941 0.87878 0.86963 0.90252 0.82082 0.84964 0.88486 0.89581 0.90568 0.88252 0.89083 0.88745 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.61 9.68 71.24 0.69 -0.92 16 2 C -0.06 -2.85 6.89 43.09 0.30 -2.55 16 3 N -0.44 -20.84 7.27 -183.45 -1.33 -22.17 16 4 C 0.43 19.17 8.42 260.85 2.20 21.37 16 5 N -0.60 -22.48 5.48 -200.06 -1.10 -23.58 16 6 C 0.56 21.22 8.36 261.35 2.18 23.41 16 7 N -0.51 -19.36 7.39 -184.57 -1.36 -20.73 16 8 C 0.24 7.03 6.90 43.20 0.30 7.33 16 9 C -0.10 -2.09 9.80 71.24 0.70 -1.39 16 10 C -0.21 -5.71 5.74 -21.32 -0.12 -5.83 16 11 C -0.05 -0.92 9.33 22.33 0.21 -0.72 16 12 C -0.12 -2.02 6.06 -19.70 -0.12 -2.14 16 13 C -0.05 -0.83 6.06 -19.70 -0.12 -0.95 16 14 C -0.13 -3.28 10.00 22.33 0.22 -3.06 16 15 C 0.18 5.43 6.61 40.18 0.27 5.70 16 16 N -0.59 -20.75 10.46 -191.61 -2.00 -22.75 16 17 C -0.09 -0.92 6.76 30.54 0.21 -0.71 16 18 C -0.12 -0.78 7.06 31.48 0.22 -0.56 16 19 C -0.08 -0.65 6.77 30.55 0.21 -0.45 16 20 N -0.63 -28.62 5.30 -315.28 -1.67 -30.29 16 21 H 0.40 15.35 8.80 -92.71 -0.82 14.54 16 22 C 0.51 28.17 7.48 86.61 0.65 28.82 16 23 O -0.57 -33.99 15.07 -4.53 -0.07 -34.06 16 24 C -0.05 -2.85 5.55 -19.68 -0.11 -2.96 16 25 C -0.44 -23.46 7.81 23.25 0.18 -23.28 16 26 H 0.10 4.98 7.42 -2.90 -0.02 4.95 16 27 C 0.03 1.69 4.62 85.22 0.39 2.08 16 28 N -0.79 -44.70 11.17 21.83 0.24 -44.45 16 29 Si 0.98 40.37 29.61 68.60 2.03 42.40 16 30 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 31 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 32 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.06 2.39 7.03 -2.39 -0.02 2.38 16 36 H 0.43 13.37 8.80 -92.71 -0.82 12.56 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 1.41 6.57 -2.39 -0.02 1.40 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.16 1.87 6.51 -2.91 -0.02 1.85 16 41 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 42 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.28 14.92 8.30 -92.71 -0.77 14.15 16 Total: -1.00 -78.00 395.86 2.62 -75.39 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.57 Total: 37.04 kcal Atomic # 6 Polarization: 34.75 SS G_CDS: 8.45 Total: 43.20 kcal Atomic # 7 Polarization: -156.74 SS G_CDS: -7.23 Total: -163.97 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.07 Total: -34.06 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -78.00 2.62 -75.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014165337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.727 kcal (2) G-P(sol) polarization free energy of solvation -78.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds