Wall clock time and date at job start Fri Apr 10 2020 14:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35905 * 116.99921 * 2 1 4 4 C 1.38757 * 120.05638 * 359.71899 * 3 2 1 5 5 C 1.38121 * 119.94331 * 179.70142 * 4 3 2 6 6 C 1.38288 * 120.05466 * 0.59856 * 5 4 3 7 7 C 1.38242 * 120.10994 * 359.68012 * 6 5 4 8 8 C 1.50698 * 119.96958 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47114 * 269.97795 * 8 7 6 10 10 O 1.21321 * 119.99777 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99982 * 179.97438 * 9 8 7 12 12 N 1.40093 * 120.00130 * 180.02562 * 11 9 8 13 13 C 1.30043 * 120.00197 * 185.59512 * 12 11 9 14 14 C 1.46950 * 120.00063 * 9.60030 * 13 12 11 15 15 C 1.36266 * 126.69896 * 21.65800 * 14 13 12 16 16 N 1.36257 * 109.70274 * 179.97438 * 15 14 13 17 17 C 1.37078 * 124.87997 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00106 * 149.07600 * 17 16 15 19 19 C 1.38820 * 119.99463 * 329.07593 * 17 16 15 20 20 N 1.31450 * 120.00303 * 3.63209 * 19 17 16 21 21 Si 1.86798 * 119.99717 * 183.63806 * 19 17 16 22 22 H 1.48498 * 109.47036 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47611 * 119.99625 * 21 19 17 24 24 H 1.48501 * 109.46824 * 239.99679 * 21 19 17 25 25 C 1.38325 * 110.24841 * 359.97438 * 16 15 14 26 26 C 1.38987 * 133.15799 * 180.02562 * 25 16 15 27 27 C 1.37934 * 119.93603 * 179.33934 * 26 25 16 28 28 C 1.38669 * 120.60218 * 0.51252 * 27 26 25 29 29 C 1.37906 * 120.29436 * 359.69361 * 28 27 26 30 30 C 1.39189 * 119.68168 * 359.97045 * 29 28 27 31 31 C 1.38165 * 120.05769 * 0.02562 * 7 6 5 32 32 H 1.08998 * 109.47143 * 300.00522 * 1 2 3 33 33 H 1.09000 * 109.46742 * 60.00353 * 1 2 3 34 34 H 1.08995 * 109.46904 * 180.02562 * 1 2 3 35 35 H 1.08003 * 120.02694 * 359.97438 * 4 3 2 36 36 H 1.07997 * 119.96926 * 180.30193 * 5 4 3 37 37 H 1.08003 * 119.93940 * 179.69824 * 6 5 4 38 38 H 1.09004 * 109.47124 * 29.97864 * 8 7 6 39 39 H 1.09003 * 109.47061 * 149.97880 * 8 7 6 40 40 H 0.96999 * 119.99513 * 0.02562 * 11 9 8 41 41 H 1.07999 * 119.99784 * 189.60046 * 13 12 11 42 42 H 1.07999 * 125.15019 * 359.93003 * 15 14 13 43 43 H 0.96993 * 120.00189 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.03032 * 359.95638 * 26 25 16 45 45 H 1.07992 * 119.69611 * 180.15937 * 27 26 25 46 46 H 1.07997 * 119.85407 * 179.66178 * 28 27 26 47 47 H 1.08001 * 120.15944 * 179.97438 * 29 28 27 48 48 H 1.07995 * 120.02697 * 180.02562 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 -0.0059 5 6 1.9209 3.6048 0.0004 6 6 3.3019 3.6759 0.0000 7 6 4.0559 2.5172 0.0000 8 6 5.5607 2.5983 0.0002 9 6 6.0625 2.6248 -1.4206 10 8 5.2753 2.5825 -2.3428 11 7 7.3857 2.6965 -1.6668 12 7 7.8522 2.7218 -2.9875 13 6 9.1298 2.6811 -3.2268 14 6 10.0729 2.3974 -2.1362 15 6 9.7926 1.7692 -0.9599 16 7 10.9217 1.6888 -0.2016 17 6 10.9920 1.1152 1.0415 18 1 11.9066 0.6420 1.3669 19 6 9.8874 1.1426 1.8819 20 7 8.7528 1.6548 1.4597 21 14 10.0136 0.4518 3.6128 22 1 11.3877 -0.0626 3.8415 23 1 9.7158 1.5236 4.5965 24 1 9.0374 -0.6553 3.7763 25 6 11.9873 2.2681 -0.8666 26 6 13.3272 2.4454 -0.5426 27 6 14.1756 3.0643 -1.4370 28 6 13.7024 3.5231 -2.6570 29 6 12.3752 3.3600 -2.9944 30 6 11.5100 2.7309 -2.1038 31 6 3.4311 1.2849 -0.0001 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 0.2128 2.3204 -0.0109 36 1 1.3339 4.5114 0.0007 37 1 3.7921 4.6382 -0.0001 38 1 5.8756 3.5067 0.5138 39 1 5.9714 1.7293 0.5144 40 1 8.0150 2.7307 -0.9294 41 1 9.4976 2.8558 -4.2271 42 1 8.8221 1.3927 -0.6720 43 1 7.9810 1.6736 2.0468 44 1 13.7059 2.0901 0.4043 45 1 15.2165 3.1978 -1.1823 46 1 14.3761 4.0109 -3.3459 47 1 12.0090 3.7186 -3.9450 48 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035044241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:41 Heat of formation + Delta-G solvation = 56.529616 kcal Electronic energy + Delta-G solvation = -33131.495746 eV Core-core repulsion = 28732.356288 eV Total energy + Delta-G solvation = -4399.139458 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.153 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.52060 -40.18357 -38.98121 -37.39763 -36.51617 -35.81126 -33.42145 -32.55424 -31.73296 -30.66370 -30.35300 -28.96597 -27.99472 -27.63364 -26.98367 -25.33891 -22.77091 -22.43340 -21.98699 -21.28947 -20.90426 -19.96338 -19.01764 -17.97918 -17.70229 -16.77027 -16.35448 -16.27385 -15.95713 -15.77614 -15.50988 -15.11117 -14.75949 -14.73752 -14.44103 -14.02005 -13.92913 -13.64349 -13.54081 -13.23801 -13.18974 -13.01029 -12.90629 -12.47920 -12.10558 -12.06782 -11.97015 -11.73195 -11.66845 -11.47081 -11.38497 -11.28685 -11.09564 -10.94706 -10.79224 -10.78475 -10.55527 -10.30552 -9.54903 -9.47531 -9.39644 -9.00194 -8.72870 -8.13634 -8.09246 -7.42514 -7.18310 -6.75357 -4.71328 1.35827 1.53850 1.77436 2.17030 2.56549 2.85621 2.89085 2.93627 3.19018 3.30058 3.37978 3.59266 3.87767 4.00160 4.44553 4.47428 4.74485 4.76041 4.78901 4.98390 5.00164 5.07518 5.28165 5.30387 5.36147 5.41171 5.49875 5.55550 5.56016 5.63413 5.71845 5.74251 5.89368 6.00898 6.07908 6.11990 6.16450 6.32735 6.45188 6.46681 6.56612 6.68177 6.68536 6.70827 6.79742 6.84682 6.93161 7.19846 7.26713 7.33758 7.40510 7.62405 7.76510 7.88706 8.13883 8.24275 8.57632 9.01904 9.15335 9.94621 Molecular weight = 377.15amu Principal moments of inertia in cm(-1) A = 0.010358 B = 0.002471 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.526350 B =11330.365382 C =13318.169537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.124 3.876 4 C -0.212 4.212 5 C -0.082 4.082 6 C -0.140 4.140 7 C -0.016 4.016 8 C -0.100 4.100 9 C 0.530 3.470 10 O -0.523 6.523 11 N -0.582 5.582 12 N -0.288 5.288 13 C 0.177 3.823 14 C -0.291 4.291 15 C 0.104 3.896 16 N -0.275 5.275 17 C -0.339 4.339 18 H 0.110 0.890 19 C 0.050 3.950 20 N -0.861 5.861 21 Si 0.945 3.055 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.272 1.272 25 C 0.053 3.947 26 C -0.101 4.101 27 C -0.137 4.137 28 C -0.155 4.155 29 C -0.090 4.090 30 C -0.077 4.077 31 C -0.134 4.134 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.407 0.593 41 H 0.168 0.832 42 H 0.183 0.817 43 H 0.284 0.716 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.111 0.889 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.423 1.292 1.317 7.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.079 3.921 4 C -0.231 4.231 5 C -0.100 4.100 6 C -0.159 4.159 7 C -0.017 4.017 8 C -0.141 4.141 9 C 0.317 3.683 10 O -0.397 6.397 11 N -0.331 5.331 12 N -0.093 5.093 13 C -0.031 4.031 14 C -0.302 4.302 15 C -0.040 4.040 16 N 0.063 4.937 17 C -0.467 4.467 18 H 0.128 0.872 19 C -0.159 4.159 20 N -0.493 5.493 21 Si 0.769 3.231 22 H -0.187 1.187 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.055 4.055 26 C -0.121 4.121 27 C -0.157 4.157 28 C -0.174 4.174 29 C -0.108 4.108 30 C -0.083 4.083 31 C -0.153 4.153 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.131 0.869 40 H 0.254 0.746 41 H 0.185 0.815 42 H 0.199 0.801 43 H 0.095 0.905 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.070 1.012 0.775 9.159 hybrid contribution 0.860 -0.199 1.699 1.914 sum -8.210 0.812 2.474 8.613 Atomic orbital electron populations 1.23012 0.78755 1.03678 1.01185 1.86075 1.21088 1.27123 1.88944 1.18913 0.92157 0.84028 0.96957 1.21144 0.99642 0.92481 1.09798 1.20827 0.94418 0.96832 0.97914 1.20918 0.93753 0.97946 1.03251 1.19097 0.93884 0.92484 0.96244 1.20660 0.92015 1.06480 0.94926 1.20234 0.81074 0.76306 0.90710 1.90671 1.55031 1.47896 1.46137 1.47481 1.08102 1.72174 1.05380 1.75180 1.14855 1.18971 1.00244 1.24338 0.87750 0.93102 0.97882 1.19385 0.92907 1.19357 0.98512 1.22608 0.93276 0.99856 0.88247 1.40064 1.05205 1.36261 1.12130 1.19968 1.01862 1.35514 0.89361 0.87218 1.25542 0.94478 0.94809 1.01077 1.69696 1.01739 1.39920 1.37972 0.85549 0.79420 0.78825 0.79271 1.18716 1.19659 1.19671 1.18498 0.90706 1.01996 0.94275 1.19988 0.90559 1.01906 0.99607 1.20533 0.98341 1.02135 0.94658 1.20643 0.95251 1.04140 0.97383 1.20255 0.92688 0.99651 0.98246 1.18833 0.92574 1.02317 0.94616 1.20255 0.91347 0.98233 1.05454 0.92835 0.92755 0.88449 0.85819 0.85913 0.85947 0.87538 0.86884 0.74583 0.81522 0.80100 0.90486 0.87091 0.87113 0.87282 0.87106 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.29 10.50 -19.44 -0.20 -4.49 16 3 C 0.12 1.80 6.69 -39.22 -0.26 1.54 16 4 C -0.21 -2.66 9.04 -39.43 -0.36 -3.01 16 5 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 6 C -0.14 -1.99 9.70 -39.56 -0.38 -2.37 16 7 C -0.02 -0.26 4.37 -104.65 -0.46 -0.71 16 8 C -0.10 -1.60 5.83 -29.03 -0.17 -1.77 16 9 C 0.53 10.61 7.94 -10.98 -0.09 10.52 16 10 O -0.52 -12.01 16.37 5.52 0.09 -11.92 16 11 N -0.58 -12.06 5.32 31.23 0.17 -11.89 16 12 N -0.29 -6.06 11.14 32.08 0.36 -5.70 16 13 C 0.18 3.37 11.58 -14.78 -0.17 3.19 16 14 C -0.29 -6.14 5.97 -103.28 -0.62 -6.76 16 15 C 0.10 2.36 7.81 -16.30 -0.13 2.23 16 16 N -0.28 -6.41 2.89 -59.47 -0.17 -6.58 16 17 C -0.34 -7.79 9.84 -14.99 -0.15 -7.94 16 18 H 0.11 2.41 7.83 -52.49 -0.41 2.00 16 19 C 0.05 1.07 5.45 -17.50 -0.10 0.98 16 20 N -0.86 -18.54 10.78 55.49 0.60 -17.94 16 21 Si 0.95 16.97 29.55 -169.99 -5.02 11.95 16 22 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 23 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 24 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 25 C 0.05 1.17 6.73 -83.82 -0.56 0.60 16 26 C -0.10 -1.94 9.93 -39.42 -0.39 -2.33 16 27 C -0.14 -2.28 10.02 -39.53 -0.40 -2.67 16 28 C -0.15 -2.50 10.03 -39.54 -0.40 -2.90 16 29 C -0.09 -1.58 10.09 -39.35 -0.40 -1.98 16 30 C -0.08 -1.60 6.36 -104.90 -0.67 -2.27 16 31 C -0.13 -2.12 9.64 -39.44 -0.38 -2.50 16 32 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 33 H 0.05 0.42 7.65 -51.93 -0.40 0.03 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.12 1.20 6.30 -52.48 -0.33 0.87 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.11 1.52 8.08 -51.93 -0.42 1.10 16 39 H 0.11 1.76 8.08 -51.93 -0.42 1.34 16 40 H 0.41 8.47 4.76 -182.60 -0.87 7.60 16 41 H 0.17 2.55 8.06 -52.49 -0.42 2.12 16 42 H 0.18 4.17 4.53 -52.49 -0.24 3.93 16 43 H 0.28 5.59 8.31 -40.82 -0.34 5.25 16 44 H 0.11 2.00 8.06 -52.49 -0.42 1.57 16 45 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 48 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 410.55 15.07 6.19 6.19 Total: -1.00 -29.26 410.55 -9.90 -39.16 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -6.42 Total: 19.56 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -5.47 Total: -18.33 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.95 Total: -42.12 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.11 Total: -16.41 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.02 Total: 11.95 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.26 -9.90 -39.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035044241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.688 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds