Wall clock time and date at job start Fri Apr 10 2020 14:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35905 * 116.99921 * 2 1 4 4 C 1.38757 * 120.05638 * 359.71899 * 3 2 1 5 5 C 1.38121 * 119.94331 * 179.70142 * 4 3 2 6 6 C 1.38288 * 120.05466 * 0.59856 * 5 4 3 7 7 C 1.38242 * 120.10994 * 359.68012 * 6 5 4 8 8 C 1.50698 * 119.96958 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47114 * 269.97795 * 8 7 6 10 10 O 1.21321 * 119.99777 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99982 * 179.97438 * 9 8 7 12 12 N 1.40093 * 120.00130 * 180.02562 * 11 9 8 13 13 C 1.30043 * 120.00197 * 185.59512 * 12 11 9 14 14 C 1.46950 * 120.00063 * 9.60030 * 13 12 11 15 15 C 1.36266 * 126.69896 * 21.65800 * 14 13 12 16 16 N 1.36257 * 109.70274 * 179.97438 * 15 14 13 17 17 C 1.37078 * 124.87997 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00106 * 149.07600 * 17 16 15 19 19 C 1.38820 * 119.99463 * 329.07593 * 17 16 15 20 20 N 1.31450 * 120.00303 * 3.63209 * 19 17 16 21 21 Si 1.86798 * 119.99717 * 183.63806 * 19 17 16 22 22 H 1.48498 * 109.47036 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47611 * 119.99625 * 21 19 17 24 24 H 1.48501 * 109.46824 * 239.99679 * 21 19 17 25 25 C 1.38325 * 110.24841 * 359.97438 * 16 15 14 26 26 C 1.38987 * 133.15799 * 180.02562 * 25 16 15 27 27 C 1.37934 * 119.93603 * 179.33934 * 26 25 16 28 28 C 1.38669 * 120.60218 * 0.51252 * 27 26 25 29 29 C 1.37906 * 120.29436 * 359.69361 * 28 27 26 30 30 C 1.39189 * 119.68168 * 359.97045 * 29 28 27 31 31 C 1.38165 * 120.05769 * 0.02562 * 7 6 5 32 32 H 1.08998 * 109.47143 * 300.00522 * 1 2 3 33 33 H 1.09000 * 109.46742 * 60.00353 * 1 2 3 34 34 H 1.08995 * 109.46904 * 180.02562 * 1 2 3 35 35 H 1.08003 * 120.02694 * 359.97438 * 4 3 2 36 36 H 1.07997 * 119.96926 * 180.30193 * 5 4 3 37 37 H 1.08003 * 119.93940 * 179.69824 * 6 5 4 38 38 H 1.09004 * 109.47124 * 29.97864 * 8 7 6 39 39 H 1.09003 * 109.47061 * 149.97880 * 8 7 6 40 40 H 0.96999 * 119.99513 * 0.02562 * 11 9 8 41 41 H 1.07999 * 119.99784 * 189.60046 * 13 12 11 42 42 H 1.07999 * 125.15019 * 359.93003 * 15 14 13 43 43 H 0.96993 * 120.00189 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.03032 * 359.95638 * 26 25 16 45 45 H 1.07992 * 119.69611 * 180.15937 * 27 26 25 46 46 H 1.07997 * 119.85407 * 179.66178 * 28 27 26 47 47 H 1.08001 * 120.15944 * 179.97438 * 29 28 27 48 48 H 1.07995 * 120.02697 * 180.02562 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 -0.0059 5 6 1.9209 3.6048 0.0004 6 6 3.3019 3.6759 0.0000 7 6 4.0559 2.5172 0.0000 8 6 5.5607 2.5983 0.0002 9 6 6.0625 2.6248 -1.4206 10 8 5.2753 2.5825 -2.3428 11 7 7.3857 2.6965 -1.6668 12 7 7.8522 2.7218 -2.9875 13 6 9.1298 2.6811 -3.2268 14 6 10.0729 2.3974 -2.1362 15 6 9.7926 1.7692 -0.9599 16 7 10.9217 1.6888 -0.2016 17 6 10.9920 1.1152 1.0415 18 1 11.9066 0.6420 1.3669 19 6 9.8874 1.1426 1.8819 20 7 8.7528 1.6548 1.4597 21 14 10.0136 0.4518 3.6128 22 1 11.3877 -0.0626 3.8415 23 1 9.7158 1.5236 4.5965 24 1 9.0374 -0.6553 3.7763 25 6 11.9873 2.2681 -0.8666 26 6 13.3272 2.4454 -0.5426 27 6 14.1756 3.0643 -1.4370 28 6 13.7024 3.5231 -2.6570 29 6 12.3752 3.3600 -2.9944 30 6 11.5100 2.7309 -2.1038 31 6 3.4311 1.2849 -0.0001 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 0.2128 2.3204 -0.0109 36 1 1.3339 4.5114 0.0007 37 1 3.7921 4.6382 -0.0001 38 1 5.8756 3.5067 0.5138 39 1 5.9714 1.7293 0.5144 40 1 8.0150 2.7307 -0.9294 41 1 9.4976 2.8558 -4.2271 42 1 8.8221 1.3927 -0.6720 43 1 7.9810 1.6736 2.0468 44 1 13.7059 2.0901 0.4043 45 1 15.2165 3.1978 -1.1823 46 1 14.3761 4.0109 -3.3459 47 1 12.0090 3.7186 -3.9450 48 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035044241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:40 Heat of formation + Delta-G solvation = 42.721404 kcal Electronic energy + Delta-G solvation = -33132.094515 eV Core-core repulsion = 28732.356288 eV Total energy + Delta-G solvation = -4399.738227 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.153 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.06939 -41.28273 -40.40949 -38.51094 -37.95836 -37.37395 -35.02530 -33.84884 -33.22388 -32.07998 -31.44000 -30.45573 -29.48399 -28.72558 -27.93049 -26.95107 -24.20315 -23.54047 -23.45223 -22.57996 -22.33365 -21.39263 -20.57664 -19.52089 -18.80760 -18.22984 -17.93963 -17.32698 -17.01148 -16.96437 -16.69679 -16.61717 -16.17280 -16.12356 -15.92357 -15.51288 -15.22776 -14.95106 -14.70132 -14.67122 -14.52068 -14.35394 -14.18547 -13.61484 -13.47664 -13.44534 -13.24348 -13.16135 -12.92996 -12.88034 -12.73198 -12.51952 -12.35046 -12.21411 -12.07363 -11.98987 -11.78534 -11.72539 -11.14071 -11.07131 -10.96664 -10.56524 -9.84689 -9.63170 -9.17851 -8.94172 -8.79528 -8.34819 -6.39927 0.26344 0.27231 0.47010 0.71683 1.08014 1.37831 1.41592 1.51659 1.73986 1.86389 2.08549 2.35201 2.40600 2.78327 2.85569 2.87979 3.27762 3.60808 3.84100 3.88586 4.03584 4.07337 4.10302 4.18146 4.26986 4.30537 4.36606 4.38643 4.39920 4.48029 4.51100 4.59105 4.67602 4.70727 4.71835 4.75570 4.92501 5.02139 5.03604 5.12601 5.23242 5.28457 5.34574 5.42914 5.46233 5.59564 5.71922 5.78201 5.79399 5.88141 6.11374 6.30865 6.34384 6.44854 6.49378 6.67340 6.95055 7.38066 7.57170 8.33760 Molecular weight = 377.15amu Principal moments of inertia in cm(-1) A = 0.010358 B = 0.002471 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.526350 B =11330.365382 C =13318.169537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.115 3.885 4 C -0.208 4.208 5 C -0.077 4.077 6 C -0.154 4.154 7 C -0.034 4.034 8 C -0.088 4.088 9 C 0.527 3.473 10 O -0.558 6.558 11 N -0.586 5.586 12 N -0.318 5.318 13 C 0.189 3.811 14 C -0.297 4.297 15 C 0.079 3.921 16 N -0.292 5.292 17 C -0.371 4.371 18 H 0.107 0.893 19 C 0.015 3.985 20 N -0.875 5.875 21 Si 1.007 2.993 22 H -0.260 1.260 23 H -0.269 1.269 24 H -0.271 1.271 25 C 0.019 3.981 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.146 4.146 29 C -0.094 4.094 30 C -0.096 4.096 31 C -0.163 4.163 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.134 0.866 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.406 0.594 41 H 0.207 0.793 42 H 0.170 0.830 43 H 0.290 0.710 44 H 0.112 0.888 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.141 0.859 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.227 2.686 1.001 7.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.069 3.931 4 C -0.226 4.226 5 C -0.095 4.095 6 C -0.173 4.173 7 C -0.034 4.034 8 C -0.129 4.129 9 C 0.315 3.685 10 O -0.435 6.435 11 N -0.334 5.334 12 N -0.123 5.123 13 C -0.017 4.017 14 C -0.308 4.308 15 C -0.065 4.065 16 N 0.046 4.954 17 C -0.498 4.498 18 H 0.125 0.875 19 C -0.191 4.191 20 N -0.507 5.507 21 Si 0.828 3.172 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.088 4.088 26 C -0.145 4.145 27 C -0.143 4.143 28 C -0.165 4.165 29 C -0.112 4.112 30 C -0.102 4.102 31 C -0.182 4.182 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.174 0.826 36 H 0.176 0.824 37 H 0.152 0.848 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.253 0.747 41 H 0.223 0.777 42 H 0.187 0.813 43 H 0.101 0.899 44 H 0.130 0.870 45 H 0.165 0.835 46 H 0.169 0.831 47 H 0.158 0.842 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.859 2.409 0.453 9.192 hybrid contribution 0.882 -0.616 1.701 2.012 sum -7.977 1.793 2.154 8.455 Atomic orbital electron populations 1.23361 0.76253 1.05566 1.02424 1.86047 1.23747 1.26941 1.88833 1.19060 0.91896 0.85236 0.96861 1.21525 1.01224 0.91645 1.08207 1.21255 0.93911 0.98246 0.96113 1.21178 0.94852 0.97787 1.03444 1.19124 0.93406 0.93231 0.97678 1.20607 0.92845 1.07044 0.92412 1.20915 0.80562 0.75142 0.91879 1.90628 1.55660 1.49718 1.47504 1.47606 1.08378 1.72075 1.05362 1.75156 1.15897 1.20627 1.00657 1.24893 0.86746 0.91138 0.98934 1.19636 0.93825 1.18976 0.98406 1.22602 0.93122 1.01453 0.89282 1.40217 1.05784 1.37008 1.12387 1.20195 1.02472 1.37043 0.90134 0.87493 1.26338 0.94000 0.94855 1.03957 1.69759 1.02090 1.39869 1.38966 0.84653 0.79305 0.78074 0.75150 1.18408 1.19351 1.19565 1.19052 0.91593 1.03082 0.95097 1.20253 0.90111 1.03424 1.00750 1.21019 0.99599 0.99626 0.94025 1.21162 0.95182 1.02584 0.97537 1.20678 0.93020 0.98732 0.98802 1.19138 0.92583 1.03370 0.95131 1.20326 0.92553 0.97942 1.07381 0.91180 0.91760 0.86456 0.82574 0.82439 0.84841 0.85977 0.87117 0.74738 0.77671 0.81326 0.89894 0.87000 0.83519 0.83110 0.84158 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.14 10.50 -92.48 -0.97 -10.11 16 3 C 0.11 3.33 6.69 22.51 0.15 3.48 16 4 C -0.21 -4.84 9.04 22.37 0.20 -4.64 16 5 C -0.08 -1.79 10.04 22.25 0.22 -1.56 16 6 C -0.15 -4.32 9.70 22.28 0.22 -4.11 16 7 C -0.03 -1.10 4.37 -19.88 -0.09 -1.18 16 8 C -0.09 -3.00 5.83 29.10 0.17 -2.83 16 9 C 0.53 22.19 7.94 87.66 0.70 22.89 16 10 O -0.56 -26.80 16.37 -3.16 -0.05 -26.85 16 11 N -0.59 -25.45 5.32 -173.49 -0.92 -26.38 16 12 N -0.32 -13.76 11.14 -52.43 -0.58 -14.34 16 13 C 0.19 7.24 11.58 87.24 1.01 8.25 16 14 C -0.30 -12.83 5.97 -18.99 -0.11 -12.94 16 15 C 0.08 3.76 7.81 83.55 0.65 4.41 16 16 N -0.29 -14.22 2.89 -342.07 -0.99 -15.21 16 17 C -0.37 -17.87 9.84 84.01 0.83 -17.04 16 18 H 0.11 4.97 7.83 -2.91 -0.02 4.94 16 19 C 0.02 0.69 5.45 84.89 0.46 1.15 16 20 N -0.87 -39.40 10.78 21.64 0.23 -39.17 16 21 Si 1.01 35.58 29.55 68.60 2.03 37.61 16 22 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 23 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 24 H -0.27 -9.43 7.11 99.48 0.71 -8.73 16 25 C 0.02 0.85 6.73 38.84 0.26 1.12 16 26 C -0.13 -4.78 9.93 22.38 0.22 -4.56 16 27 C -0.12 -3.74 10.02 22.30 0.22 -3.51 16 28 C -0.15 -4.13 10.03 22.29 0.22 -3.91 16 29 C -0.09 -3.06 10.09 22.42 0.23 -2.83 16 30 C -0.10 -3.98 6.36 -20.05 -0.13 -4.11 16 31 C -0.16 -5.44 9.64 22.36 0.22 -5.22 16 32 H 0.07 0.85 7.67 -2.39 -0.02 0.83 16 33 H 0.06 0.86 7.65 -2.39 -0.02 0.85 16 34 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.16 2.52 6.30 -2.91 -0.02 2.50 16 36 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.12 3.66 8.08 -2.39 -0.02 3.64 16 39 H 0.11 3.76 8.08 -2.39 -0.02 3.74 16 40 H 0.41 17.84 4.76 -213.33 -1.01 16.83 16 41 H 0.21 5.91 8.06 -2.91 -0.02 5.89 16 42 H 0.17 8.30 4.53 -2.91 -0.01 8.29 16 43 H 0.29 11.91 8.31 -92.71 -0.77 11.14 16 44 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 45 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 46 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 47 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 48 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -67.63 410.55 5.51 -62.12 By element: Atomic # 1 Polarization: 58.11 SS G_CDS: 0.00 Total: 58.11 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 6.77 Total: -25.77 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -2.26 Total: -95.10 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.02 Total: -36.96 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Total: -67.63 5.51 -62.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035044241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.837 kcal (2) G-P(sol) polarization free energy of solvation -67.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds