Wall clock time and date at job start Fri Apr 10 2020 14:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38780 * 119.77293 * 2 1 4 4 C 1.36607 * 120.66762 * 179.97438 * 3 2 1 5 5 C 1.39735 * 119.88634 * 359.96153 * 4 3 2 6 6 N 1.35787 * 133.59842 * 180.02562 * 5 4 3 7 7 C 1.30109 * 109.64215 * 180.02562 * 6 5 4 8 8 C 1.50696 * 124.95403 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.52572 * 335.11163 * 8 7 6 10 10 C 1.53039 * 109.50284 * 215.02474 * 8 7 6 11 11 C 1.53046 * 109.52798 * 178.69012 * 10 8 7 12 12 C 1.53159 * 109.32667 * 61.37318 * 11 10 8 13 13 N 1.46928 * 108.76987 * 305.35456 * 12 11 10 14 14 S 1.65595 * 120.63205 * 233.63241 * 13 12 11 15 15 O 1.42098 * 104.27860 * 26.04539 * 14 13 12 16 16 O 1.42096 * 104.27978 * 153.90766 * 14 13 12 17 17 C 1.81400 * 104.44862 * 269.97699 * 14 13 12 18 18 C 1.53002 * 109.47236 * 179.97438 * 17 14 13 19 19 C 1.50701 * 109.47551 * 179.97438 * 18 17 14 20 20 H 1.08004 * 119.99460 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00361 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00012 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99817 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47250 * 89.99586 * 23 21 19 25 25 H 1.48500 * 109.47135 * 209.99754 * 23 21 19 26 26 H 1.48502 * 109.46990 * 330.00025 * 23 21 19 27 27 C 1.46931 * 118.73792 * 53.61250 * 13 12 11 28 28 N 1.36040 * 110.09992 * 0.26442 * 7 6 5 29 29 H 0.96999 * 126.35146 * 179.74215 * 28 7 6 30 30 C 1.38050 * 107.30288 * 359.57039 * 28 7 6 31 31 C 1.37851 * 119.77785 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47453 * 270.02118 * 1 2 3 33 33 H 1.08996 * 109.47521 * 30.02656 * 1 2 3 34 34 H 1.08999 * 109.46982 * 150.02453 * 1 2 3 35 35 H 1.07998 * 119.66588 * 359.97438 * 3 2 1 36 36 H 1.07996 * 120.05236 * 180.02562 * 4 3 2 37 37 H 1.09002 * 109.46050 * 298.70598 * 10 8 7 38 38 H 1.09004 * 109.46034 * 58.67814 * 10 8 7 39 39 H 1.08996 * 109.49379 * 181.30938 * 11 10 8 40 40 H 1.08994 * 109.49581 * 301.40708 * 11 10 8 41 41 H 1.08999 * 109.58991 * 185.56748 * 12 11 10 42 42 H 1.09002 * 109.70860 * 65.20753 * 12 11 10 43 43 H 1.08999 * 109.47250 * 299.99678 * 17 14 13 44 44 H 1.08995 * 109.47692 * 60.00065 * 17 14 13 45 45 H 1.09006 * 109.47353 * 300.00254 * 18 17 14 46 46 H 1.09004 * 109.47051 * 59.99951 * 18 17 14 47 47 H 0.97005 * 120.00077 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.58425 * 186.61021 * 27 13 12 49 49 H 1.08995 * 109.70793 * 66.24640 * 27 13 12 50 50 H 1.08004 * 120.15213 * 0.05256 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2046 0.0000 4 6 3.5620 1.2259 0.0005 5 6 4.2771 0.0254 0.0019 6 7 5.6011 -0.2758 0.0031 7 6 5.7557 -1.5677 0.0036 8 6 7.0847 -2.2781 0.0043 9 1 7.8455 -1.6282 -0.4279 10 6 6.9787 -3.5611 -0.8233 11 6 8.3367 -4.2664 -0.8500 12 6 8.7395 -4.6447 0.5784 13 7 8.7031 -3.4377 1.4154 14 16 10.0230 -2.9913 2.3103 15 8 11.1260 -3.5522 1.6117 16 8 9.8874 -1.5845 2.4571 17 6 9.7904 -3.8230 3.9056 18 6 10.9603 -3.4854 4.8320 19 6 10.7669 -4.1758 6.1576 20 1 9.8968 -4.7939 6.3225 21 6 11.7013 -4.0192 7.1593 22 7 11.5327 -4.6221 8.3158 23 14 13.2066 -2.9507 6.8737 24 1 12.9056 -1.5534 7.2766 25 1 14.3402 -3.4660 7.6829 26 1 13.5708 -2.9832 5.4344 27 6 7.4734 -2.6339 1.4429 28 7 4.5428 -2.1837 -0.0033 29 1 4.3840 -3.1406 -0.0080 30 6 3.5799 -1.1945 0.0017 31 6 2.1916 -1.1965 0.0005 32 1 -0.3634 0.0004 1.0277 33 1 -0.3634 0.8897 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6470 2.1346 -0.0004 36 1 4.0882 2.1691 0.0009 37 1 6.2354 -4.2212 -0.3763 38 1 6.6785 -3.3127 -1.8413 39 1 8.2665 -5.1678 -1.4587 40 1 9.0856 -3.5977 -1.2742 41 1 9.7482 -5.0577 0.5765 42 1 8.0427 -5.3842 0.9732 43 1 8.8585 -3.4854 4.3589 44 1 9.7495 -4.9011 3.7508 45 1 11.8922 -3.8233 4.3785 46 1 11.0017 -2.4073 4.9870 47 1 12.1898 -4.5117 9.0207 48 1 7.6469 -1.7201 2.0111 49 1 6.6705 -3.2062 1.9074 50 1 1.6504 -2.1312 0.0001 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096492644.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:41 Heat of formation + Delta-G solvation = -16.224313 kcal Electronic energy + Delta-G solvation = -32032.021622 eV Core-core repulsion = 27765.171269 eV Total energy + Delta-G solvation = -4266.850354 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.156 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.48505 -39.04674 -37.80873 -36.83852 -35.60596 -33.96527 -33.63853 -33.14023 -32.14041 -31.49767 -31.19920 -29.85740 -26.66763 -26.01764 -24.81074 -24.27632 -22.68917 -21.87867 -21.41593 -21.11261 -20.27506 -18.66172 -18.09461 -17.66450 -17.26440 -16.96527 -16.21793 -15.75774 -15.58192 -15.41714 -14.84543 -14.76776 -14.71971 -14.38233 -14.24783 -14.17496 -13.93125 -13.79676 -13.73885 -13.60138 -12.89533 -12.81562 -12.58325 -12.26713 -11.98512 -11.91735 -11.88273 -11.76471 -11.73408 -11.71061 -11.53153 -11.35482 -11.26880 -11.21749 -11.00116 -10.95135 -10.74115 -10.45965 -10.19631 -10.16889 -9.77013 -9.45836 -9.01276 -8.67678 -8.63891 -8.25440 -6.18037 -4.19455 0.53623 0.67597 1.23645 2.45817 2.54698 2.82542 3.26090 3.33354 3.37367 3.57633 3.68824 4.13547 4.20125 4.32227 4.34746 4.41209 4.48284 4.54135 4.59329 4.78012 4.82950 4.86265 4.90849 4.99713 5.11101 5.13159 5.13801 5.17645 5.24516 5.32201 5.36822 5.37304 5.43360 5.49988 5.55703 5.58545 5.61385 5.64894 5.68638 5.78714 5.95912 5.96543 6.10425 6.24825 6.25594 6.28660 6.46298 6.60340 6.79533 6.91953 7.02464 7.53066 7.65378 8.34775 8.82690 9.41581 10.94268 Molecular weight = 377.16amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.002059 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.501250 B =13594.582068 C =14712.409027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 C -0.128 4.128 4 C -0.059 4.059 5 C 0.043 3.957 6 N -0.483 5.483 7 C 0.297 3.703 8 C -0.024 4.024 9 H 0.115 0.885 10 C -0.115 4.115 11 C -0.128 4.128 12 C 0.113 3.887 13 N -1.003 6.003 14 S 2.586 3.414 15 O -0.961 6.961 16 O -0.958 6.958 17 C -0.581 4.581 18 C -0.007 4.007 19 C -0.520 4.520 20 H 0.077 0.923 21 C 0.071 3.929 22 N -0.895 5.895 23 Si 0.869 3.131 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 C 0.129 3.871 28 N -0.596 5.596 29 H 0.422 0.578 30 C 0.051 3.949 31 C -0.114 4.114 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.032 0.968 46 H 0.028 0.972 47 H 0.266 0.734 48 H 0.105 0.895 49 H 0.069 0.931 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.961 3.121 -21.988 30.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.073 4.073 3 C -0.148 4.148 4 C -0.078 4.078 5 C -0.075 4.075 6 N -0.202 5.202 7 C 0.029 3.971 8 C -0.046 4.046 9 H 0.133 0.867 10 C -0.153 4.153 11 C -0.167 4.167 12 C -0.012 4.012 13 N -0.839 5.839 14 S 2.685 3.315 15 O -0.951 6.951 16 O -0.948 6.948 17 C -0.715 4.715 18 C -0.047 4.047 19 C -0.559 4.559 20 H 0.095 0.905 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.696 3.304 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.186 1.186 27 C 0.002 3.998 28 N -0.207 5.207 29 H 0.261 0.739 30 C -0.059 4.059 31 C -0.135 4.135 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.076 0.924 48 H 0.124 0.876 49 H 0.087 0.913 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.541 4.345 -22.143 29.850 hybrid contribution -0.374 -1.025 0.473 1.189 sum -19.916 3.320 -21.670 29.618 Atomic orbital electron populations 1.20762 0.90682 1.02823 1.02490 1.19613 0.95951 0.92166 0.99532 1.20539 0.93443 0.97680 1.03183 1.20044 0.93183 0.95893 0.98691 1.19105 0.89275 0.93169 1.05931 1.70471 1.16699 1.11502 1.21566 1.23339 0.87325 0.88292 0.98127 1.20199 0.89730 0.96375 0.98272 0.86670 1.21589 0.98599 0.95143 0.99966 1.21829 0.96633 1.01214 0.97066 1.21485 1.03614 0.86117 0.89976 1.57945 1.29683 1.36019 1.60253 1.05835 0.73075 0.75356 0.77222 1.93539 1.50033 1.80157 1.71358 1.93561 1.85243 1.28914 1.87117 1.30338 1.10017 1.13221 1.17880 1.19418 0.91225 0.97920 0.96101 1.20835 1.09576 1.30600 0.94844 0.90460 1.24990 0.97976 0.95294 0.94884 1.69879 1.36166 1.43072 1.04192 0.86923 0.82949 0.81306 0.79271 1.19618 1.20733 1.18607 1.21342 0.86905 0.96420 0.95166 1.43026 1.05432 1.09158 1.63112 0.73937 1.18839 0.91494 0.89267 1.06275 1.19756 0.89327 0.98429 1.06000 0.90992 0.91285 0.91626 0.85372 0.85194 0.91684 0.91002 0.90148 0.90688 0.88238 0.91267 0.85728 0.85658 0.94933 0.95364 0.92364 0.87647 0.91315 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.00 36.00 0.36 -0.19 16 2 C -0.07 -0.55 5.88 -104.56 -0.62 -1.17 16 3 C -0.13 -1.06 9.61 -39.97 -0.38 -1.45 16 4 C -0.06 -0.62 10.05 -39.61 -0.40 -1.01 16 5 C 0.04 0.55 7.23 -84.70 -0.61 -0.07 16 6 N -0.48 -6.67 11.27 -8.23 -0.09 -6.76 16 7 C 0.30 3.25 6.82 -154.82 -1.06 2.19 16 8 C -0.02 -0.23 2.81 -91.65 -0.26 -0.49 16 9 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 10 C -0.11 -0.78 4.87 -26.69 -0.13 -0.91 16 11 C -0.13 -0.96 6.08 -26.63 -0.16 -1.12 16 12 C 0.11 1.05 6.43 -3.73 -0.02 1.03 16 13 N -1.00 -11.99 3.22 -113.53 -0.37 -12.36 16 14 S 2.59 42.74 5.45 -107.50 -0.59 42.16 16 15 O -0.96 -17.95 16.59 -57.54 -0.95 -18.90 16 16 O -0.96 -18.52 16.59 -57.54 -0.95 -19.48 16 17 C -0.58 -10.42 6.12 37.16 0.23 -10.20 16 18 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 19 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 20 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 21 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 22 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 23 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 27 C 0.13 1.41 5.70 -3.70 -0.02 1.39 16 28 N -0.60 -5.21 5.97 -8.00 -0.05 -5.26 16 29 H 0.42 2.31 8.13 -40.82 -0.33 1.98 16 30 C 0.05 0.54 7.31 -83.99 -0.61 -0.08 16 31 C -0.11 -0.96 9.71 -39.50 -0.38 -1.35 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 34 H 0.06 0.27 8.08 -51.93 -0.42 -0.15 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.06 0.33 7.43 -51.93 -0.39 -0.06 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.01 6.86 -51.93 -0.36 0.65 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 44 H 0.13 2.01 8.14 -51.93 -0.42 1.59 16 45 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 46 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.11 1.36 6.86 -51.93 -0.36 1.00 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 413.01 15.07 6.22 6.22 Total: -1.00 -36.91 413.01 -12.98 -49.89 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.70 Total: 0.41 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -4.61 Total: -26.53 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.27 Total: -50.60 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -1.91 Total: -38.38 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 42.74 SS G_CDS: -0.59 Total: 42.16 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.91 -12.98 -49.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096492644.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.665 kcal (2) G-P(sol) polarization free energy of solvation -36.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds