Wall clock time and date at job start Fri Apr 10 2020 14:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38780 * 119.77293 * 2 1 4 4 C 1.36607 * 120.66762 * 179.97438 * 3 2 1 5 5 C 1.39735 * 119.88634 * 359.96153 * 4 3 2 6 6 N 1.35787 * 133.59842 * 180.02562 * 5 4 3 7 7 C 1.30109 * 109.64215 * 180.02562 * 6 5 4 8 8 C 1.50696 * 124.95403 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.52572 * 335.11163 * 8 7 6 10 10 C 1.53039 * 109.50284 * 215.02474 * 8 7 6 11 11 C 1.53046 * 109.52798 * 178.69012 * 10 8 7 12 12 C 1.53159 * 109.32667 * 61.37318 * 11 10 8 13 13 N 1.46928 * 108.76987 * 305.35456 * 12 11 10 14 14 S 1.65595 * 120.63205 * 233.63241 * 13 12 11 15 15 O 1.42098 * 104.27860 * 26.04539 * 14 13 12 16 16 O 1.42096 * 104.27978 * 153.90766 * 14 13 12 17 17 C 1.81400 * 104.44862 * 269.97699 * 14 13 12 18 18 C 1.53002 * 109.47236 * 179.97438 * 17 14 13 19 19 C 1.50701 * 109.47551 * 179.97438 * 18 17 14 20 20 H 1.08004 * 119.99460 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00361 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00012 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99817 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47250 * 89.99586 * 23 21 19 25 25 H 1.48500 * 109.47135 * 209.99754 * 23 21 19 26 26 H 1.48502 * 109.46990 * 330.00025 * 23 21 19 27 27 C 1.46931 * 118.73792 * 53.61250 * 13 12 11 28 28 N 1.36040 * 110.09992 * 0.26442 * 7 6 5 29 29 H 0.96999 * 126.35146 * 179.74215 * 28 7 6 30 30 C 1.38050 * 107.30288 * 359.57039 * 28 7 6 31 31 C 1.37851 * 119.77785 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47453 * 270.02118 * 1 2 3 33 33 H 1.08996 * 109.47521 * 30.02656 * 1 2 3 34 34 H 1.08999 * 109.46982 * 150.02453 * 1 2 3 35 35 H 1.07998 * 119.66588 * 359.97438 * 3 2 1 36 36 H 1.07996 * 120.05236 * 180.02562 * 4 3 2 37 37 H 1.09002 * 109.46050 * 298.70598 * 10 8 7 38 38 H 1.09004 * 109.46034 * 58.67814 * 10 8 7 39 39 H 1.08996 * 109.49379 * 181.30938 * 11 10 8 40 40 H 1.08994 * 109.49581 * 301.40708 * 11 10 8 41 41 H 1.08999 * 109.58991 * 185.56748 * 12 11 10 42 42 H 1.09002 * 109.70860 * 65.20753 * 12 11 10 43 43 H 1.08999 * 109.47250 * 299.99678 * 17 14 13 44 44 H 1.08995 * 109.47692 * 60.00065 * 17 14 13 45 45 H 1.09006 * 109.47353 * 300.00254 * 18 17 14 46 46 H 1.09004 * 109.47051 * 59.99951 * 18 17 14 47 47 H 0.97005 * 120.00077 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.58425 * 186.61021 * 27 13 12 49 49 H 1.08995 * 109.70793 * 66.24640 * 27 13 12 50 50 H 1.08004 * 120.15213 * 0.05256 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2046 0.0000 4 6 3.5620 1.2259 0.0005 5 6 4.2771 0.0254 0.0019 6 7 5.6011 -0.2758 0.0031 7 6 5.7557 -1.5677 0.0036 8 6 7.0847 -2.2781 0.0043 9 1 7.8455 -1.6282 -0.4279 10 6 6.9787 -3.5611 -0.8233 11 6 8.3367 -4.2664 -0.8500 12 6 8.7395 -4.6447 0.5784 13 7 8.7031 -3.4377 1.4154 14 16 10.0230 -2.9913 2.3103 15 8 11.1260 -3.5522 1.6117 16 8 9.8874 -1.5845 2.4571 17 6 9.7904 -3.8230 3.9056 18 6 10.9603 -3.4854 4.8320 19 6 10.7669 -4.1758 6.1576 20 1 9.8968 -4.7939 6.3225 21 6 11.7013 -4.0192 7.1593 22 7 11.5327 -4.6221 8.3158 23 14 13.2066 -2.9507 6.8737 24 1 12.9056 -1.5534 7.2766 25 1 14.3402 -3.4660 7.6829 26 1 13.5708 -2.9832 5.4344 27 6 7.4734 -2.6339 1.4429 28 7 4.5428 -2.1837 -0.0033 29 1 4.3840 -3.1406 -0.0080 30 6 3.5799 -1.1945 0.0017 31 6 2.1916 -1.1965 0.0005 32 1 -0.3634 0.0004 1.0277 33 1 -0.3634 0.8897 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6470 2.1346 -0.0004 36 1 4.0882 2.1691 0.0009 37 1 6.2354 -4.2212 -0.3763 38 1 6.6785 -3.3127 -1.8413 39 1 8.2665 -5.1678 -1.4587 40 1 9.0856 -3.5977 -1.2742 41 1 9.7482 -5.0577 0.5765 42 1 8.0427 -5.3842 0.9732 43 1 8.8585 -3.4854 4.3589 44 1 9.7495 -4.9011 3.7508 45 1 11.8922 -3.8233 4.3785 46 1 11.0017 -2.4073 4.9870 47 1 12.1898 -4.5117 9.0207 48 1 7.6469 -1.7201 2.0111 49 1 6.6705 -3.2062 1.9074 50 1 1.6504 -2.1312 0.0001 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096492644.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:39 Heat of formation + Delta-G solvation = -41.440769 kcal Electronic energy + Delta-G solvation = -32033.115090 eV Core-core repulsion = 27765.171269 eV Total energy + Delta-G solvation = -4267.943821 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.156 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.22691 -39.79744 -38.49268 -38.26592 -37.04723 -35.90728 -34.39080 -33.93834 -33.48447 -32.83038 -31.86845 -30.52388 -27.90452 -27.26524 -25.64343 -25.00804 -23.38829 -23.14833 -22.50193 -22.06882 -21.05235 -19.86548 -19.32667 -18.84984 -18.42668 -17.94084 -17.33884 -17.08601 -16.46687 -16.42087 -16.26198 -15.82521 -15.53586 -15.40124 -15.20096 -14.97338 -14.87313 -14.84179 -14.59873 -14.56280 -14.22270 -13.81912 -13.71245 -13.24425 -13.15586 -13.08953 -13.05194 -12.98336 -12.96093 -12.81278 -12.51877 -12.33163 -12.25714 -12.19848 -11.99729 -11.97309 -11.76459 -11.75705 -11.68228 -11.49953 -11.25293 -10.98768 -10.86119 -10.02056 -9.33347 -8.98098 -8.38224 -6.43766 -0.78689 -0.04599 0.54249 1.30543 1.32322 1.42247 1.57870 1.75400 1.89958 2.27867 2.78874 2.85513 2.94371 2.95722 3.15953 3.50897 3.60884 3.72904 3.86294 3.95037 4.01331 4.01816 4.12983 4.15798 4.25094 4.27701 4.33168 4.43845 4.46455 4.53479 4.55558 4.70677 4.74504 4.77397 4.83997 4.91672 4.92828 4.99592 5.04702 5.07946 5.08865 5.10274 5.18936 5.26888 5.36832 5.41617 5.45694 5.54414 5.60535 5.66362 5.96853 6.15005 6.42467 6.61978 6.88819 7.20569 8.77160 Molecular weight = 377.16amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.002059 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.501250 B =13594.582068 C =14712.409027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.072 4.072 3 C -0.124 4.124 4 C -0.084 4.084 5 C 0.004 3.996 6 N -0.532 5.532 7 C 0.296 3.704 8 C -0.019 4.019 9 H 0.094 0.906 10 C -0.107 4.107 11 C -0.126 4.126 12 C 0.101 3.899 13 N -0.992 5.992 14 S 2.613 3.387 15 O -0.982 6.982 16 O -0.990 6.990 17 C -0.586 4.586 18 C -0.018 4.018 19 C -0.526 4.526 20 H 0.050 0.950 21 C 0.013 3.987 22 N -0.938 5.938 23 Si 0.923 3.077 24 H -0.263 1.263 25 H -0.272 1.272 26 H -0.249 1.249 27 C 0.125 3.875 28 N -0.579 5.579 29 H 0.438 0.562 30 C 0.043 3.957 31 C -0.117 4.117 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.152 0.848 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.033 0.967 46 H 0.027 0.973 47 H 0.270 0.730 48 H 0.079 0.921 49 H 0.098 0.902 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.214 2.095 -23.989 33.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.073 4.073 3 C -0.144 4.144 4 C -0.104 4.104 5 C -0.113 4.113 6 N -0.252 5.252 7 C 0.027 3.973 8 C -0.041 4.041 9 H 0.112 0.888 10 C -0.145 4.145 11 C -0.165 4.165 12 C -0.023 4.023 13 N -0.831 5.831 14 S 2.711 3.289 15 O -0.972 6.972 16 O -0.980 6.980 17 C -0.718 4.718 18 C -0.057 4.057 19 C -0.565 4.565 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.578 5.578 23 Si 0.746 3.254 24 H -0.188 1.188 25 H -0.197 1.197 26 H -0.173 1.173 27 C -0.002 4.002 28 N -0.192 5.192 29 H 0.280 0.720 30 C -0.067 4.067 31 C -0.138 4.138 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.116 0.884 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.797 3.290 -24.139 32.690 hybrid contribution 0.156 -0.706 1.048 1.273 sum -21.641 2.583 -23.092 31.753 Atomic orbital electron populations 1.20823 0.88293 1.04080 1.03321 1.20051 0.97645 0.91696 0.97950 1.20870 0.92665 0.99212 1.01657 1.20252 0.94317 0.95552 1.00243 1.19500 0.89306 0.94842 1.07701 1.70384 1.18080 1.13418 1.23365 1.23367 0.88172 0.87872 0.97863 1.20148 0.88671 0.97523 0.97754 0.88814 1.21603 0.99059 0.93730 1.00143 1.21849 0.96382 1.02232 0.95995 1.21880 1.04266 0.85352 0.90766 1.57548 1.28854 1.37219 1.59473 1.04748 0.73458 0.74185 0.76547 1.93506 1.51888 1.80346 1.71460 1.93520 1.86018 1.30996 1.87481 1.30333 1.08239 1.14886 1.18321 1.19378 0.93690 0.97334 0.95294 1.21162 1.08457 1.30031 0.96865 0.93147 1.25865 1.01206 0.96754 0.94709 1.70001 1.37606 1.44952 1.05257 0.86047 0.79555 0.79811 0.79972 1.18753 1.19732 1.17302 1.21465 0.86888 0.95768 0.96065 1.42864 1.04315 1.09775 1.62271 0.71957 1.19081 0.92366 0.88856 1.06407 1.20123 0.88539 0.99886 1.05230 0.90203 0.90150 0.90354 0.83030 0.85510 0.88838 0.90005 0.87096 0.92340 0.89118 0.87991 0.84589 0.83852 0.94856 0.95459 0.92105 0.90243 0.88427 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.00 71.23 0.71 -0.01 16 2 C -0.07 -0.96 5.88 -19.83 -0.12 -1.08 16 3 C -0.12 -1.92 9.61 22.02 0.21 -1.71 16 4 C -0.08 -1.82 10.05 22.25 0.22 -1.59 16 5 C 0.00 0.11 7.23 39.45 0.29 0.39 16 6 N -0.53 -15.27 11.27 -179.97 -2.03 -17.30 16 7 C 0.30 6.34 6.82 137.92 0.94 7.28 16 8 C -0.02 -0.35 2.81 -11.46 -0.03 -0.38 16 9 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 10 C -0.11 -1.14 4.87 30.62 0.15 -0.99 16 11 C -0.13 -1.50 6.08 30.66 0.19 -1.32 16 12 C 0.10 1.60 6.43 86.35 0.56 2.16 16 13 N -0.99 -22.36 3.22 -513.10 -1.65 -24.01 16 14 S 2.61 85.49 5.45 -56.49 -0.31 85.18 16 15 O -0.98 -36.22 16.59 -127.65 -2.12 -38.34 16 16 O -0.99 -38.91 16.59 -127.65 -2.12 -41.02 16 17 C -0.59 -20.75 6.12 71.98 0.44 -20.31 16 18 C -0.02 -0.84 4.05 29.85 0.12 -0.72 16 19 C -0.53 -29.78 9.66 25.60 0.25 -29.53 16 20 H 0.05 3.03 7.99 -2.91 -0.02 3.01 16 21 C 0.01 0.78 5.47 84.66 0.46 1.24 16 22 N -0.94 -57.77 13.96 21.45 0.30 -57.47 16 23 Si 0.92 44.24 27.47 68.60 1.88 46.12 16 24 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 27 C 0.12 2.60 5.70 86.36 0.49 3.09 16 28 N -0.58 -9.10 5.97 -179.23 -1.07 -10.17 16 29 H 0.44 3.42 8.13 -92.71 -0.75 2.66 16 30 C 0.04 0.85 7.31 38.86 0.28 1.14 16 31 C -0.12 -1.71 9.71 22.32 0.22 -1.49 16 32 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 34 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 35 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 36 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16 37 H 0.09 0.49 7.43 -2.39 -0.02 0.48 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 1.65 6.86 -2.39 -0.02 1.63 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 44 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 45 H 0.03 1.55 7.20 -2.38 -0.02 1.53 16 46 H 0.03 1.28 7.57 -2.38 -0.02 1.26 16 47 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 48 H 0.08 2.10 6.86 -2.39 -0.02 2.09 16 49 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 50 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -83.68 413.01 -1.58 -85.26 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.15 Total: 15.57 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 5.38 Total: -43.84 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -4.45 Total: -108.95 kcal Atomic # 8 Polarization: -75.13 SS G_CDS: -4.23 Total: -79.36 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Atomic # 16 Polarization: 85.49 SS G_CDS: -0.31 Total: 85.18 kcal Total: -83.68 -1.58 -85.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096492644.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.823 kcal (2) G-P(sol) polarization free energy of solvation -83.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds