Wall clock time and date at job start Fri Apr 10 2020 14:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47562 * 2 1 4 4 C 1.46504 * 119.99698 * 269.99871 * 3 2 1 5 5 C 1.53000 * 109.47261 * 264.76769 * 4 3 2 6 6 C 1.34774 * 120.00297 * 89.99468 * 3 2 1 7 7 O 1.21615 * 119.99799 * 4.67187 * 6 3 2 8 8 C 1.47282 * 120.00051 * 184.66095 * 6 3 2 9 9 C 1.37958 * 126.80745 * 57.45443 * 8 6 3 10 10 N 1.34161 * 107.89535 * 179.73638 * 9 8 6 11 11 C 1.46494 * 125.16256 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47650 * 124.99786 * 11 10 9 13 13 H 1.07998 * 119.99654 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00258 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99841 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00112 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46948 * 89.99874 * 16 14 12 18 18 H 1.48496 * 109.47083 * 209.99955 * 16 14 12 19 19 H 1.48499 * 109.47071 * 329.99979 * 16 14 12 20 20 N 1.39777 * 109.67433 * 359.97438 * 10 9 8 21 21 C 1.31385 * 109.07699 * 0.02562 * 20 10 9 22 22 C 1.48244 * 126.51302 * 180.02562 * 21 20 10 23 23 C 1.40474 * 119.72406 * 136.07527 * 22 21 20 24 24 C 1.35788 * 120.86679 * 179.74256 * 23 22 21 25 25 C 1.40664 * 119.98208 * 0.53057 * 24 23 22 26 26 C 1.40509 * 121.06183 * 179.73628 * 25 24 23 27 27 C 1.36131 * 119.71096 * 180.02562 * 26 25 24 28 28 C 1.39366 * 121.00180 * 0.02562 * 27 26 25 29 29 C 1.36095 * 120.96211 * 359.97079 * 28 27 26 30 30 C 1.40634 * 119.66153 * 0.02562 * 29 28 27 31 31 C 1.38256 * 119.72222 * 316.34997 * 22 21 20 32 32 H 1.09005 * 109.47019 * 300.00299 * 1 2 3 33 33 H 1.09002 * 109.46886 * 59.99949 * 1 2 3 34 34 H 1.08992 * 109.47461 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.46956 * 239.99655 * 2 1 3 36 36 H 1.09002 * 109.46886 * 120.00051 * 2 1 3 37 37 H 1.09008 * 109.47252 * 24.76960 * 4 3 2 38 38 H 1.09000 * 109.47065 * 144.76469 * 4 3 2 39 39 H 1.09005 * 109.47019 * 299.99753 * 5 4 3 40 40 H 1.09000 * 109.47326 * 59.99859 * 5 4 3 41 41 H 1.08998 * 109.46988 * 180.02562 * 5 4 3 42 42 H 1.07999 * 126.05239 * 359.75558 * 9 8 6 43 43 H 1.09005 * 109.46490 * 244.99685 * 11 10 9 44 44 H 1.08995 * 109.47556 * 4.99014 * 11 10 9 45 45 H 0.96998 * 119.99642 * 180.02562 * 15 14 12 46 46 H 1.08002 * 119.56574 * 0.02562 * 23 22 21 47 47 H 1.07998 * 120.00996 * 180.27757 * 24 23 22 48 48 H 1.07997 * 120.15157 * 0.04406 * 26 25 24 49 49 H 1.07994 * 119.49685 * 180.02562 * 27 26 25 50 50 H 1.07997 * 119.51971 * 179.97438 * 28 27 26 51 51 H 1.07995 * 120.16693 * 180.02562 * 29 28 27 52 52 H 1.07998 * 120.26672 * 359.95692 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.7399 1.9406 -1.6447 6 6 2.2430 2.0165 1.1671 7 8 2.1221 1.4176 2.2186 8 6 2.6351 3.4362 1.1692 9 6 1.9354 4.4878 0.6143 10 7 2.6325 5.6116 0.8400 11 6 2.2314 6.9537 0.4112 12 6 2.2004 7.8741 1.6041 13 1 2.4538 7.4968 2.5839 14 6 1.8487 9.1976 1.4448 15 7 1.5406 9.6571 0.2516 16 14 1.8096 10.3382 2.9237 17 1 3.1420 10.9709 3.0961 18 1 0.7854 11.3918 2.7092 19 1 1.4705 9.5587 4.1412 20 7 3.7991 5.3076 1.5475 21 6 3.8431 4.0130 1.7672 22 6 4.9108 3.2758 2.4843 23 6 4.5662 2.2855 3.4191 24 6 5.5252 1.5925 4.0853 25 6 6.8841 1.8705 3.8511 26 6 7.8949 1.1711 4.5318 27 6 9.2014 1.4629 4.2842 28 6 9.5549 2.4479 3.3638 29 6 8.6039 3.1460 2.6854 30 6 7.2436 2.8724 2.9146 31 6 6.2372 3.5727 2.2316 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8900 37 1 1.6478 1.6246 -2.0501 38 1 2.0066 3.1260 -1.1638 39 1 4.3547 2.3877 -0.8635 40 1 3.9960 0.8863 -1.7497 41 1 3.9217 2.4547 -2.5885 42 1 0.9931 4.4186 0.0912 43 1 2.9468 7.3304 -0.3199 44 1 1.2401 6.9100 -0.0398 45 1 1.2935 10.5883 0.1395 46 1 3.5249 2.0693 3.6070 47 1 5.2447 0.8309 4.7977 48 1 7.6367 0.4052 5.2480 49 1 9.9755 0.9230 4.8090 50 1 10.5988 2.6601 3.1862 51 1 8.8923 3.9063 1.9747 52 1 6.4968 4.3376 1.5148 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004516872.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:33 Heat of formation + Delta-G solvation = 61.012508 kcal Electronic energy + Delta-G solvation = -34295.416581 eV Core-core repulsion = 30032.304610 eV Total energy + Delta-G solvation = -4263.111970 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 377.184 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.21124 -41.08809 -40.39698 -37.59142 -37.01957 -35.67091 -34.02699 -33.44670 -33.12789 -31.56878 -31.18005 -30.30602 -29.94163 -28.70624 -25.67927 -25.19808 -24.45927 -24.17373 -23.67699 -22.89962 -22.21640 -21.19234 -20.03986 -18.73298 -18.30744 -18.23960 -17.82132 -17.46977 -17.20625 -16.92061 -16.20029 -15.99254 -15.78873 -15.63816 -15.18294 -14.96258 -14.94111 -14.71167 -14.59018 -14.53537 -14.31372 -14.19745 -14.01412 -13.75814 -13.67092 -13.47184 -13.33659 -13.02133 -12.92117 -12.84303 -12.78894 -12.57887 -12.35838 -12.31903 -12.15752 -11.97783 -11.89080 -11.83305 -11.71552 -11.55062 -10.96764 -10.84169 -10.77588 -10.44085 -9.73800 -9.54557 -9.25741 -8.76531 -8.38681 -6.51537 -0.48708 -0.03308 0.83237 1.01348 1.31552 1.34299 1.36295 1.46193 1.63092 1.82040 2.15068 2.25699 2.31349 2.94238 3.16792 3.33035 3.65489 3.72818 3.85652 3.96938 4.03163 4.06885 4.18352 4.18828 4.25748 4.30830 4.34411 4.43555 4.45479 4.48761 4.52629 4.58627 4.61169 4.61772 4.77161 4.85034 4.87062 4.92557 4.96855 4.97210 4.98375 5.08846 5.13261 5.27883 5.29534 5.32940 5.36273 5.43592 5.50384 5.57210 5.62914 5.68147 5.73202 5.77392 5.88485 6.05569 6.09554 6.40129 6.56646 6.79858 7.18435 7.23912 8.69164 Molecular weight = 377.18amu Principal moments of inertia in cm(-1) A = 0.005767 B = 0.003480 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4854.167921 B = 8043.017026 C =11534.430195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.109 3.891 3 N -0.604 5.604 4 C 0.103 3.897 5 C -0.162 4.162 6 C 0.607 3.393 7 O -0.567 6.567 8 C -0.299 4.299 9 C 0.098 3.902 10 N -0.332 5.332 11 C 0.268 3.732 12 C -0.551 4.551 13 H 0.047 0.953 14 C 0.026 3.974 15 N -0.915 5.915 16 Si 0.964 3.036 17 H -0.274 1.274 18 H -0.269 1.269 19 H -0.277 1.277 20 N -0.301 5.301 21 C 0.121 3.879 22 C -0.024 4.024 23 C -0.103 4.103 24 C -0.106 4.106 25 C -0.062 4.062 26 C -0.113 4.113 27 C -0.113 4.113 28 C -0.116 4.116 29 C -0.118 4.118 30 C -0.070 4.070 31 C -0.087 4.087 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.207 0.793 43 H 0.030 0.970 44 H 0.064 0.936 45 H 0.274 0.726 46 H 0.130 0.870 47 H 0.152 0.848 48 H 0.151 0.849 49 H 0.155 0.845 50 H 0.151 0.849 51 H 0.135 0.865 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.095 -21.520 -2.095 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.013 4.013 3 N -0.336 5.336 4 C -0.019 4.019 5 C -0.220 4.220 6 C 0.396 3.604 7 O -0.447 6.447 8 C -0.315 4.315 9 C -0.053 4.053 10 N -0.109 5.109 11 C 0.150 3.850 12 C -0.589 4.589 13 H 0.066 0.934 14 C -0.175 4.175 15 N -0.553 5.553 16 Si 0.789 3.211 17 H -0.199 1.199 18 H -0.193 1.193 19 H -0.202 1.202 20 N -0.122 5.122 21 C -0.046 4.046 22 C -0.026 4.026 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.062 4.062 26 C -0.131 4.131 27 C -0.131 4.131 28 C -0.133 4.133 29 C -0.136 4.136 30 C -0.070 4.070 31 C -0.107 4.107 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.224 0.776 43 H 0.048 0.952 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.147 0.853 47 H 0.170 0.830 48 H 0.169 0.831 49 H 0.173 0.827 50 H 0.169 0.831 51 H 0.153 0.847 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.474 -20.361 -1.591 22.112 hybrid contribution -0.839 0.708 0.354 1.153 sum 7.635 -19.653 -1.237 21.121 Atomic orbital electron populations 1.22091 0.95056 1.03088 1.01657 1.21577 0.94916 0.81132 1.03663 1.47982 1.65296 1.14657 1.05640 1.21772 0.97138 0.98213 0.84827 1.22098 0.96167 1.02407 1.01375 1.17182 0.75048 0.84595 0.83576 1.90626 1.53440 1.68224 1.32429 1.21043 1.00151 0.94179 1.16130 1.23220 0.98549 0.84968 0.98557 1.48887 1.14286 1.08634 1.39094 1.19468 0.96192 0.73874 0.95464 1.21347 1.48191 0.95268 0.94130 0.93425 1.25609 0.93913 0.98921 0.99107 1.69962 1.45545 1.16738 1.23081 0.85458 0.78399 0.78297 0.78970 1.19910 1.19331 1.20156 1.77371 1.05353 1.14313 1.15212 1.22032 0.94634 0.90000 0.97899 1.17857 0.90524 0.96709 0.97472 1.21207 1.01353 0.94583 0.95099 1.21146 0.91151 1.00034 1.00067 1.18446 0.94418 0.96460 0.96884 1.21339 0.92450 0.99731 0.99568 1.21282 0.96686 0.97453 0.97676 1.21226 1.00515 0.95662 0.95929 1.21271 0.91036 1.00599 1.00724 1.18203 0.94268 0.97012 0.97500 1.21393 0.91253 0.98619 0.99412 0.94818 0.91384 0.89769 0.87731 0.91565 0.86917 0.91091 0.95468 0.91513 0.90281 0.77622 0.95174 0.91783 0.91711 0.85253 0.83007 0.83104 0.82698 0.83113 0.84704 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.24 71.98 0.74 -1.99 16 2 C 0.11 2.09 6.14 86.38 0.53 2.62 16 3 N -0.60 -14.90 2.48 -825.86 -2.05 -16.95 16 4 C 0.10 2.05 5.92 86.38 0.51 2.56 16 5 C -0.16 -3.38 10.20 71.98 0.73 -2.64 16 6 C 0.61 20.41 7.18 86.62 0.62 21.03 16 7 O -0.57 -21.79 13.80 -4.08 -0.06 -21.85 16 8 C -0.30 -11.18 5.00 -18.78 -0.09 -11.27 16 9 C 0.10 3.59 9.43 84.27 0.79 4.39 16 10 N -0.33 -14.90 3.62 -350.19 -1.27 -16.16 16 11 C 0.27 13.29 6.21 85.63 0.53 13.83 16 12 C -0.55 -30.80 9.21 25.60 0.24 -30.56 16 13 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 14 C 0.03 1.40 5.46 84.65 0.46 1.86 16 15 N -0.91 -50.62 13.29 21.45 0.28 -50.33 16 16 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 N -0.30 -14.24 12.30 -44.54 -0.55 -14.78 16 21 C 0.12 5.08 6.83 44.06 0.30 5.38 16 22 C -0.02 -0.90 5.79 -20.07 -0.12 -1.02 16 23 C -0.10 -3.65 8.83 22.25 0.20 -3.45 16 24 C -0.11 -3.05 9.73 22.29 0.22 -2.83 16 25 C -0.06 -1.69 5.74 -21.26 -0.12 -1.81 16 26 C -0.11 -2.26 9.76 22.33 0.22 -2.05 16 27 C -0.11 -1.89 9.95 22.05 0.22 -1.67 16 28 C -0.12 -2.10 9.95 22.04 0.22 -1.88 16 29 C -0.12 -2.81 9.77 22.36 0.22 -2.59 16 30 C -0.07 -2.07 5.74 -21.31 -0.12 -2.19 16 31 C -0.09 -3.02 9.52 22.79 0.22 -2.80 16 32 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 1.36 8.07 -2.39 -0.02 1.34 16 36 H 0.07 1.53 7.36 -2.39 -0.02 1.51 16 37 H 0.11 1.46 8.03 -2.38 -0.02 1.44 16 38 H 0.07 1.60 5.13 -2.39 -0.01 1.59 16 39 H 0.03 0.75 7.97 -2.38 -0.02 0.73 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.21 5.86 7.73 -2.91 -0.02 5.84 16 43 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.06 3.04 8.05 -2.39 -0.02 3.03 16 45 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.13 4.97 5.63 -2.91 -0.02 4.95 16 47 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 48 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 49 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 50 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 51 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 52 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -72.11 434.24 5.82 -66.29 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.92 Total: 25.01 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 6.51 Total: -17.09 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -3.58 Total: -98.23 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.06 Total: -21.85 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -72.11 5.82 -66.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516872.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.304 kcal (2) G-P(sol) polarization free energy of solvation -72.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds