Wall clock time and date at job start Fri Apr 10 2020 14:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.46731 * 2 1 4 4 C 1.46505 * 119.99734 * 270.00013 * 3 2 1 5 5 C 1.52998 * 109.46882 * 264.36265 * 4 3 2 6 6 C 1.34776 * 120.00294 * 90.00082 * 3 2 1 7 7 O 1.21623 * 119.99810 * 5.39384 * 6 3 2 8 8 C 1.47265 * 120.00071 * 185.40205 * 6 3 2 9 9 C 1.37940 * 126.81286 * 49.45507 * 8 6 3 10 10 N 1.34173 * 107.91070 * 180.02562 * 9 8 6 11 11 C 1.46502 * 125.14542 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46940 * 125.00119 * 11 10 9 13 13 H 1.08006 * 120.00135 * 359.97438 * 12 11 10 14 14 C 1.37885 * 120.00083 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00015 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99649 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47128 * 90.00492 * 16 14 12 18 18 H 1.48500 * 109.46843 * 210.00107 * 16 14 12 19 19 H 1.48492 * 109.47329 * 330.00091 * 16 14 12 20 20 N 1.39768 * 109.69748 * 359.77005 * 10 9 8 21 21 C 1.31479 * 109.05948 * 0.39563 * 20 10 9 22 22 C 1.48024 * 126.52196 * 179.88034 * 21 20 10 23 23 C 1.38418 * 120.35286 * 227.15817 * 22 21 20 24 24 C 1.39011 * 120.68349 * 179.97438 * 23 22 21 25 25 C 1.36232 * 121.14313 * 0.02562 * 24 23 22 26 26 C 1.40533 * 120.07584 * 359.97438 * 25 24 23 27 27 C 1.40584 * 121.17652 * 180.02562 * 26 25 24 28 28 C 1.36117 * 119.65575 * 180.02562 * 27 26 25 29 29 C 1.39315 * 120.96063 * 359.97397 * 28 27 26 30 30 C 1.36210 * 120.94609 * 359.97438 * 29 28 27 31 31 C 1.40227 * 119.68205 * 0.02562 * 30 29 28 32 32 H 1.09004 * 109.47158 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47557 * 299.99760 * 1 2 3 34 34 H 1.08996 * 109.47660 * 60.00634 * 1 2 3 35 35 H 1.08996 * 109.47557 * 240.00240 * 2 1 3 36 36 H 1.08996 * 109.47660 * 119.99366 * 2 1 3 37 37 H 1.08998 * 109.47242 * 24.36072 * 4 3 2 38 38 H 1.08997 * 109.46999 * 144.36619 * 4 3 2 39 39 H 1.09003 * 109.47518 * 59.99900 * 5 4 3 40 40 H 1.09001 * 109.47044 * 180.02562 * 5 4 3 41 41 H 1.09007 * 109.47472 * 300.00302 * 5 4 3 42 42 H 1.07993 * 126.04250 * 0.02562 * 9 8 6 43 43 H 1.09000 * 109.47154 * 244.99707 * 11 10 9 44 44 H 1.08999 * 109.47323 * 4.99961 * 11 10 9 45 45 H 0.96998 * 120.00029 * 179.97438 * 15 14 12 46 46 H 1.08003 * 119.66463 * 0.02562 * 23 22 21 47 47 H 1.07997 * 119.42623 * 180.02562 * 24 23 22 48 48 H 1.08000 * 119.96113 * 179.70321 * 25 24 23 49 49 H 1.07997 * 120.16601 * 0.02562 * 27 26 25 50 50 H 1.08001 * 119.51324 * 179.97438 * 28 27 26 51 51 H 1.08002 * 119.52704 * 180.02562 * 29 28 27 52 52 H 1.08005 * 120.16064 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0719 -1.2688 5 6 3.7416 1.9495 -1.6396 6 6 2.2428 2.0167 1.1672 7 8 2.1349 1.4142 2.2181 8 6 2.6188 3.4406 1.1699 9 6 1.9870 4.4636 0.4939 10 7 2.6431 5.6027 0.7626 11 6 2.2892 6.9237 0.2373 12 6 2.1037 7.8862 1.3820 13 1 2.2357 7.5475 2.3991 14 6 1.7653 9.1991 1.1310 15 7 1.6039 10.0391 2.1299 16 14 1.5376 9.7848 -0.6281 17 1 0.1200 9.6025 -1.0310 18 1 1.8978 11.2225 -0.7215 19 1 2.4141 8.9954 -1.5301 20 7 3.7117 5.3389 1.6239 21 6 3.7398 4.0520 1.8917 22 6 4.7136 3.3541 2.7610 23 6 5.3215 2.1863 2.3336 24 6 6.2374 1.5256 3.1441 25 6 6.5616 2.0054 4.3773 26 6 5.9683 3.1879 4.8512 27 6 6.2863 3.7040 6.1196 28 6 5.6927 4.8516 6.5479 29 6 4.7730 5.5249 5.7470 30 6 4.4424 5.0539 4.5124 31 6 5.0339 3.8744 4.0379 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3634 0.5137 -0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5137 0.8900 37 1 1.6530 1.6200 -2.0515 38 1 1.9994 3.1247 -1.1659 39 1 4.0046 0.8967 -1.7425 40 1 3.9234 2.4637 -2.5834 41 1 4.3511 2.4014 -0.8568 42 1 1.1179 4.3650 -0.1395 43 1 3.0873 7.2820 -0.4128 44 1 1.3620 6.8523 -0.3312 45 1 1.3663 10.9627 1.9533 46 1 5.0825 1.7847 1.3599 47 1 6.6999 0.6161 2.7902 48 1 7.2721 1.4740 4.9931 49 1 6.9979 3.1926 6.7508 50 1 5.9384 5.2458 7.5229 51 1 4.3162 6.4339 6.1098 52 1 3.7280 5.5864 3.9018 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005000334.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:39 Heat of formation + Delta-G solvation = 68.675826 kcal Electronic energy + Delta-G solvation = -34975.500749 eV Core-core repulsion = 30712.721085 eV Total energy + Delta-G solvation = -4262.779664 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 377.184 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -42.31208 -41.07927 -40.40194 -37.44327 -37.06402 -35.75184 -34.53191 -33.38519 -32.87299 -31.49892 -31.17392 -30.55278 -30.12994 -28.97604 -25.36218 -25.21461 -24.46891 -24.11628 -23.87025 -23.05975 -22.18264 -21.00439 -19.92579 -19.12285 -18.43706 -18.14298 -17.98496 -17.47471 -17.13956 -17.03293 -16.36435 -15.99736 -15.76776 -15.49284 -15.29207 -14.99629 -14.92736 -14.71188 -14.64134 -14.55347 -14.43977 -14.37235 -13.95956 -13.88294 -13.62832 -13.53894 -13.40848 -13.03544 -12.91697 -12.83278 -12.61303 -12.53697 -12.40566 -12.10819 -12.07885 -11.97467 -11.89520 -11.84668 -11.80999 -11.56021 -11.04761 -10.90704 -10.86561 -10.31697 -9.75320 -9.58643 -9.38765 -8.68470 -8.40363 -6.52090 -0.53777 0.06186 0.73957 0.81398 1.32855 1.36139 1.38715 1.45348 1.60568 1.91707 2.09996 2.25627 2.26067 2.91767 3.14560 3.30289 3.61485 3.75480 3.88601 3.89478 3.96011 4.05787 4.12489 4.18726 4.27281 4.29032 4.32570 4.38110 4.41453 4.45244 4.53014 4.56398 4.56690 4.61027 4.63647 4.71630 4.79919 4.83223 4.98685 4.99955 5.03236 5.09606 5.14647 5.15868 5.20894 5.26584 5.32915 5.37326 5.40202 5.52351 5.58886 5.69147 5.73279 5.83112 5.90478 6.07462 6.23024 6.40945 6.52732 6.74248 7.10488 7.25185 8.76799 Molecular weight = 377.18amu Principal moments of inertia in cm(-1) A = 0.005751 B = 0.004326 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4867.571196 B = 6470.443996 C =10267.678216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 N -0.604 5.604 4 C 0.097 3.903 5 C -0.164 4.164 6 C 0.607 3.393 7 O -0.576 6.576 8 C -0.301 4.301 9 C 0.100 3.900 10 N -0.332 5.332 11 C 0.233 3.767 12 C -0.550 4.550 13 H 0.023 0.977 14 C 0.016 3.984 15 N -0.941 5.941 16 Si 0.955 3.045 17 H -0.251 1.251 18 H -0.283 1.283 19 H -0.235 1.235 20 N -0.298 5.298 21 C 0.126 3.874 22 C -0.024 4.024 23 C -0.085 4.085 24 C -0.117 4.117 25 C -0.091 4.091 26 C -0.070 4.070 27 C -0.099 4.099 28 C -0.119 4.119 29 C -0.127 4.127 30 C -0.128 4.128 31 C -0.053 4.053 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.029 0.971 42 H 0.219 0.781 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.272 0.728 46 H 0.122 0.878 47 H 0.163 0.837 48 H 0.171 0.829 49 H 0.172 0.828 50 H 0.156 0.844 51 H 0.119 0.881 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.001 -21.746 -7.128 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.012 4.012 3 N -0.336 5.336 4 C -0.025 4.025 5 C -0.223 4.223 6 C 0.395 3.605 7 O -0.456 6.456 8 C -0.317 4.317 9 C -0.050 4.050 10 N -0.109 5.109 11 C 0.114 3.886 12 C -0.588 4.588 13 H 0.041 0.959 14 C -0.183 4.183 15 N -0.579 5.579 16 Si 0.776 3.224 17 H -0.175 1.175 18 H -0.209 1.209 19 H -0.158 1.158 20 N -0.119 5.119 21 C -0.041 4.041 22 C -0.026 4.026 23 C -0.105 4.105 24 C -0.135 4.135 25 C -0.109 4.109 26 C -0.070 4.070 27 C -0.117 4.117 28 C -0.137 4.137 29 C -0.145 4.145 30 C -0.147 4.147 31 C -0.054 4.054 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.048 0.952 42 H 0.235 0.765 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.140 0.860 47 H 0.181 0.819 48 H 0.189 0.811 49 H 0.189 0.811 50 H 0.174 0.826 51 H 0.138 0.862 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.384 -20.566 -6.440 22.476 hybrid contribution -1.092 0.844 -0.280 1.408 sum 5.292 -19.722 -6.720 21.497 Atomic orbital electron populations 1.22103 0.95344 1.03056 1.01545 1.21573 0.94729 0.81186 1.03738 1.47975 1.65480 1.14640 1.05538 1.21907 0.97492 0.98434 0.84658 1.22130 0.95905 1.02663 1.01555 1.17168 0.75145 0.84587 0.83568 1.90727 1.53582 1.68253 1.33032 1.21122 1.04020 0.94669 1.11854 1.23391 0.98304 0.84654 0.98629 1.48627 1.20178 1.08514 1.33552 1.20045 0.98065 0.76159 0.94361 1.21168 1.49627 0.95326 0.92719 0.95867 1.25934 0.93402 0.95828 1.03144 1.70056 1.47807 1.05574 1.34486 0.85627 0.80531 0.78347 0.77940 1.17523 1.20858 1.15785 1.77527 1.08630 1.15050 1.10717 1.21963 0.95578 0.89939 0.96631 1.17976 0.96359 0.95946 0.92311 1.21165 0.96078 0.92998 1.00244 1.21072 0.97264 1.00812 0.94334 1.21481 0.99120 0.93884 0.96418 1.18407 0.96757 0.96561 0.95321 1.21452 0.99905 0.96091 0.94240 1.21161 0.96078 0.95808 1.00652 1.21099 0.98881 1.00423 0.94086 1.21138 1.00196 0.96179 0.97153 1.18161 0.97762 0.95450 0.94007 0.89816 0.95296 0.91113 0.87207 0.91832 0.86766 0.90718 0.91270 0.90115 0.95167 0.76488 0.92932 0.89521 0.91877 0.86012 0.81941 0.81112 0.81100 0.82611 0.86249 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.24 71.98 0.74 -1.94 16 2 C 0.11 1.98 6.14 86.38 0.53 2.51 16 3 N -0.60 -13.89 2.48 -825.88 -2.05 -15.95 16 4 C 0.10 1.63 5.92 86.38 0.51 2.15 16 5 C -0.16 -2.78 10.20 71.98 0.73 -2.05 16 6 C 0.61 20.33 6.83 86.62 0.59 20.92 16 7 O -0.58 -23.67 16.66 -4.10 -0.07 -23.73 16 8 C -0.30 -11.17 5.22 -18.77 -0.10 -11.27 16 9 C 0.10 3.48 9.35 84.26 0.79 4.27 16 10 N -0.33 -14.32 3.62 -350.19 -1.27 -15.59 16 11 C 0.23 10.33 5.28 85.63 0.45 10.78 16 12 C -0.55 -31.45 9.76 25.60 0.25 -31.20 16 13 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 14 C 0.02 0.90 5.47 84.66 0.46 1.36 16 15 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16 16 Si 0.96 39.68 27.47 68.60 1.88 41.56 16 17 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.23 -8.60 6.54 99.48 0.65 -7.95 16 20 N -0.30 -14.31 10.74 -44.61 -0.48 -14.79 16 21 C 0.13 5.40 6.16 44.00 0.27 5.67 16 22 C -0.02 -0.95 5.80 -19.82 -0.11 -1.07 16 23 C -0.09 -2.71 9.27 22.50 0.21 -2.50 16 24 C -0.12 -2.84 9.93 21.99 0.22 -2.62 16 25 C -0.09 -2.13 9.75 22.36 0.22 -1.91 16 26 C -0.07 -2.16 5.74 -21.31 -0.12 -2.28 16 27 C -0.10 -2.48 9.77 22.35 0.22 -2.26 16 28 C -0.12 -3.28 9.95 22.04 0.22 -3.06 16 29 C -0.13 -4.63 9.95 22.06 0.22 -4.41 16 30 C -0.13 -5.61 9.28 22.28 0.21 -5.40 16 31 C -0.05 -2.10 5.76 -21.14 -0.12 -2.22 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 1.21 8.07 -2.39 -0.02 1.19 16 36 H 0.06 1.43 7.35 -2.39 -0.02 1.42 16 37 H 0.11 1.13 8.03 -2.39 -0.02 1.11 16 38 H 0.07 1.39 4.49 -2.39 -0.01 1.38 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.03 0.70 7.97 -2.38 -0.02 0.68 16 42 H 0.22 5.31 7.21 -2.91 -0.02 5.29 16 43 H 0.05 2.27 7.20 -2.39 -0.02 2.25 16 44 H 0.09 3.19 7.48 -2.39 -0.02 3.18 16 45 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.12 3.62 7.88 -2.91 -0.02 3.60 16 47 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 48 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 49 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 50 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 51 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 52 H 0.09 4.78 6.15 -2.91 -0.02 4.77 16 Total: -1.00 -85.82 430.63 5.57 -80.25 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.87 Total: 32.49 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 6.38 Total: -26.55 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -3.50 Total: -104.01 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.07 Total: -23.73 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.88 Total: 41.56 kcal Total: -85.82 5.57 -80.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000334.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.925 kcal (2) G-P(sol) polarization free energy of solvation -85.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds