Wall clock time and date at job start Fri Apr 10 2020 14:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46501 * 120.00514 * 2 1 4 4 C 1.50696 * 109.46917 * 269.99831 * 3 2 1 5 5 H 1.07996 * 120.00225 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00107 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99795 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00115 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47138 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46999 * 120.00327 * 8 6 4 11 11 H 1.48502 * 109.47258 * 240.00332 * 8 6 4 12 12 C 1.39681 * 119.99897 * 179.97438 * 2 1 3 13 13 C 1.38908 * 120.07466 * 0.02562 * 12 2 1 14 14 C 1.38099 * 119.92510 * 180.02562 * 13 12 2 15 15 C 1.38283 * 120.07602 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.92785 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.33118 * 269.66507 * 16 15 14 18 18 N 1.46742 * 109.19041 * 29.23476 * 16 15 14 19 19 C 1.39043 * 118.78187 * 76.86303 * 18 16 15 20 20 C 1.38470 * 121.76107 * 208.82550 * 19 18 16 21 21 C 1.38167 * 119.67099 * 180.50109 * 20 19 18 22 22 C 1.38597 * 120.54615 * 0.04084 * 21 20 19 23 23 C 1.37944 * 120.51350 * 359.76582 * 22 21 20 24 24 C 1.39310 * 119.54938 * 359.97438 * 23 22 21 25 25 C 1.47426 * 121.55961 * 181.37873 * 24 23 22 26 26 O 1.21602 * 120.34467 * 350.25131 * 25 24 23 27 27 N 1.34806 * 119.35787 * 170.45107 * 25 24 23 28 28 C 1.46506 * 119.41489 * 171.59666 * 27 25 24 29 29 C 1.53000 * 117.49874 * 312.22727 * 28 27 25 30 30 C 1.53004 * 117.49584 * 243.56526 * 28 27 25 31 31 C 1.38288 * 120.14981 * 0.27872 * 15 14 13 32 32 C 1.38105 * 120.07061 * 359.44684 * 31 15 14 33 33 H 1.09002 * 109.47309 * 270.00528 * 1 2 3 34 34 H 1.09001 * 109.46954 * 30.00203 * 1 2 3 35 35 H 1.09005 * 109.47291 * 150.00098 * 1 2 3 36 36 H 1.09001 * 109.46504 * 29.99597 * 3 2 1 37 37 H 1.09001 * 109.47312 * 149.99489 * 3 2 1 38 38 H 0.96990 * 120.00157 * 180.02562 * 7 6 4 39 39 H 1.08000 * 120.03820 * 359.97438 * 13 12 2 40 40 H 1.08006 * 119.96371 * 180.02562 * 14 13 12 41 41 H 0.97000 * 120.61001 * 256.83463 * 18 16 15 42 42 H 1.07999 * 120.16354 * 0.52009 * 20 19 18 43 43 H 1.08000 * 119.72496 * 180.02562 * 21 20 19 44 44 H 1.08002 * 119.74421 * 179.78700 * 22 21 20 45 45 H 1.08001 * 120.22652 * 180.02562 * 23 22 21 46 46 H 1.08995 * 115.55021 * 97.89800 * 28 27 25 47 47 H 1.09002 * 117.50026 * 359.97438 * 29 28 27 48 48 H 1.08998 * 117.49594 * 145.02407 * 29 28 27 49 49 H 1.08997 * 117.49657 * 214.97491 * 30 28 27 50 50 H 1.08994 * 117.49943 * 359.97438 * 30 28 27 51 51 H 1.07998 * 119.95985 * 179.70449 * 31 15 14 52 52 H 1.08001 * 120.03867 * 180.27965 * 32 31 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5536 3.6179 -0.6732 8 14 3.4382 3.4166 -3.4340 9 1 2.8610 2.4160 -4.3674 10 1 2.8003 4.7370 -3.6680 11 1 4.9009 3.5252 -3.6666 12 6 2.1633 -1.2097 0.0005 13 6 1.4703 -2.4136 0.0005 14 6 2.1639 -3.6077 0.0016 15 6 3.5467 -3.6060 0.0021 16 6 4.3003 -4.9111 0.0039 17 1 4.4855 -5.2194 1.0329 18 7 3.4944 -5.9343 -0.6721 19 6 3.4295 -5.9257 -2.0610 20 6 2.3227 -6.4039 -2.7420 21 6 2.3084 -6.3842 -4.1234 22 6 3.3926 -5.8909 -4.8321 23 6 4.5013 -5.4072 -4.1690 24 6 4.5270 -5.4160 -2.7762 25 6 5.6761 -4.8825 -2.0222 26 8 6.7038 -4.5832 -2.5992 27 7 5.5780 -4.7334 -0.6860 28 6 6.7710 -4.3814 0.0881 29 6 8.0484 -5.1795 -0.1806 30 6 7.2690 -5.3965 1.1189 31 6 4.2398 -2.4093 0.0074 32 6 3.5524 -1.2115 0.0007 33 1 -0.3634 0.0001 1.0277 34 1 -0.3633 0.8900 -0.5139 35 1 -0.3634 -0.8900 -0.5138 36 1 1.6084 2.0283 0.5138 37 1 3.1499 1.1383 0.5139 38 1 4.0298 4.4441 -0.8504 39 1 0.3903 -2.4157 0.0005 40 1 1.6257 -4.5442 0.0012 41 1 3.0161 -6.6046 -0.1595 42 1 1.4747 -6.7900 -2.1959 43 1 1.4455 -6.7566 -4.6554 44 1 3.3690 -5.8849 -5.9118 45 1 5.3434 -5.0235 -4.7259 46 1 6.8796 -3.3242 0.3298 47 1 8.0011 -5.9667 -0.9331 48 1 8.9974 -4.6473 -0.1154 49 1 7.7057 -5.0070 2.0385 50 1 6.7089 -6.3259 1.2214 51 1 5.3198 -2.4115 0.0127 52 1 4.0942 -0.2772 0.0002 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007886350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:28 Heat of formation + Delta-G solvation = 67.861173 kcal Electronic energy + Delta-G solvation = -35026.911618 eV Core-core repulsion = 30764.096628 eV Total energy + Delta-G solvation = -4262.814990 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 377.184 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.11058 -40.33448 -39.55039 -38.41146 -37.39735 -36.42511 -34.77102 -33.76589 -31.99378 -31.91802 -31.46690 -29.92851 -29.57854 -27.09544 -25.88501 -25.62467 -24.16614 -23.37626 -23.04804 -22.90865 -22.58800 -21.25773 -19.80497 -19.01513 -18.68656 -18.49873 -18.25714 -17.49828 -17.13315 -16.75102 -16.34135 -16.03163 -15.96231 -15.79113 -15.42569 -15.36949 -15.12747 -15.04028 -14.72755 -14.42193 -14.38880 -14.33901 -14.04852 -13.77769 -13.56334 -13.26284 -13.17435 -13.06762 -12.81309 -12.71696 -12.65101 -12.58476 -12.43965 -12.22726 -12.14731 -11.82405 -11.75491 -11.50756 -11.38268 -11.03297 -10.90944 -10.68607 -10.44148 -10.06676 -9.81181 -9.69983 -8.63801 -8.41454 -7.86301 -6.41633 -0.03199 0.56555 0.66336 0.72120 1.30381 1.33381 1.44474 1.78407 1.84672 2.29119 2.32078 2.59249 2.74320 2.95034 3.01690 3.08631 3.56736 3.79834 3.85233 3.91507 3.95782 4.00180 4.11348 4.18646 4.22279 4.22786 4.40897 4.46486 4.52344 4.57238 4.64037 4.70182 4.71519 4.78054 4.79870 4.84247 4.97178 5.00443 5.03444 5.05814 5.14938 5.17678 5.19388 5.27483 5.35258 5.50516 5.54932 5.59547 5.61480 5.65720 5.70209 5.82023 6.02840 6.08466 6.13976 6.37853 6.45212 6.75947 6.78673 6.89426 7.16050 7.30244 8.78584 Molecular weight = 377.18amu Principal moments of inertia in cm(-1) A = 0.008001 B = 0.003018 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3498.558690 B = 9275.359453 C = 9589.646564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.629 5.629 3 C 0.267 3.733 4 C -0.541 4.541 5 H 0.046 0.954 6 C 0.016 3.984 7 N -0.924 5.924 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.269 1.269 11 H -0.280 1.280 12 C 0.220 3.780 13 C -0.217 4.217 14 C -0.032 4.032 15 C -0.203 4.203 16 C 0.443 3.557 17 H 0.140 0.860 18 N -0.731 5.731 19 C 0.240 3.760 20 C -0.179 4.179 21 C -0.050 4.050 22 C -0.180 4.180 23 C -0.048 4.048 24 C -0.232 4.232 25 C 0.563 3.437 26 O -0.577 6.577 27 N -0.589 5.589 28 C 0.042 3.958 29 C -0.166 4.166 30 C -0.143 4.143 31 C -0.057 4.057 32 C -0.220 4.220 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.012 0.988 37 H 0.009 0.991 38 H 0.267 0.733 39 H 0.138 0.862 40 H 0.153 0.847 41 H 0.430 0.570 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.142 0.858 45 H 0.112 0.888 46 H 0.109 0.891 47 H 0.077 0.923 48 H 0.108 0.892 49 H 0.128 0.872 50 H 0.110 0.890 51 H 0.110 0.890 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 -26.604 3.149 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.337 5.337 3 C 0.145 3.855 4 C -0.580 4.580 5 H 0.064 0.936 6 C -0.184 4.184 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.194 1.194 11 H -0.206 1.206 12 C 0.115 3.885 13 C -0.239 4.239 14 C -0.051 4.051 15 C -0.208 4.208 16 C 0.254 3.746 17 H 0.157 0.843 18 N -0.367 5.367 19 C 0.137 3.863 20 C -0.201 4.201 21 C -0.069 4.069 22 C -0.200 4.200 23 C -0.068 4.068 24 C -0.239 4.239 25 C 0.355 3.645 26 O -0.457 6.457 27 N -0.322 5.322 28 C -0.062 4.062 29 C -0.204 4.204 30 C -0.180 4.180 31 C -0.076 4.076 32 C -0.243 4.243 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.030 0.970 37 H 0.027 0.973 38 H 0.076 0.924 39 H 0.156 0.844 40 H 0.171 0.829 41 H 0.272 0.728 42 H 0.181 0.819 43 H 0.178 0.822 44 H 0.160 0.840 45 H 0.131 0.869 46 H 0.126 0.874 47 H 0.096 0.904 48 H 0.126 0.874 49 H 0.146 0.854 50 H 0.128 0.872 51 H 0.128 0.872 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.981 -25.970 3.006 26.312 hybrid contribution 0.684 1.436 -0.981 1.869 sum -2.297 -24.534 2.024 24.724 Atomic orbital electron populations 1.21631 0.79117 1.02598 1.01183 1.47000 1.05791 1.03677 1.77187 1.18757 0.91079 0.80393 0.95228 1.21792 1.36411 1.06417 0.93402 0.93595 1.25714 0.95072 0.96372 1.01216 1.70023 1.38989 1.14800 1.32576 0.85542 0.77983 0.78388 0.80009 1.19775 1.19413 1.20575 1.18262 0.91356 0.86793 0.92115 1.20834 1.00247 0.90461 1.12393 1.20757 0.92483 0.97498 0.94404 1.20277 0.94677 0.94274 1.11546 1.19242 0.76911 0.84811 0.93676 0.84312 1.44521 1.54995 1.34734 1.02411 1.17918 0.91204 0.92711 0.84510 1.21027 0.97111 1.07131 0.94818 1.21574 0.97883 0.93633 0.93788 1.21222 0.94010 1.03586 1.01171 1.21070 0.98388 0.94939 0.92389 1.19776 0.95768 1.13445 0.94894 1.18479 0.87472 0.76466 0.82081 1.90710 1.33145 1.52331 1.69556 1.47673 1.09487 1.69430 1.05561 1.21778 0.86519 0.96965 1.00973 1.23059 0.95245 1.02269 0.99793 1.23453 1.01377 0.99584 0.93592 1.20704 0.99003 0.91533 0.96377 1.20705 0.93498 0.98168 1.11964 0.92523 0.92645 0.90157 0.96982 0.97269 0.92351 0.84397 0.82944 0.72829 0.81922 0.82224 0.84012 0.86948 0.87382 0.90429 0.87396 0.85375 0.87151 0.87193 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.29 10.19 127.77 1.30 4.59 16 2 N -0.63 -27.39 2.99 -726.57 -2.17 -29.56 16 3 C 0.27 14.19 4.91 85.63 0.42 14.61 16 4 C -0.54 -31.19 9.39 25.60 0.24 -30.95 16 5 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 6 C 0.02 0.91 5.46 84.66 0.46 1.37 16 7 N -0.92 -55.16 13.29 21.45 0.28 -54.88 16 8 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 9 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 C 0.22 8.88 6.55 38.21 0.25 9.13 16 13 C -0.22 -6.67 9.21 22.40 0.21 -6.47 16 14 C -0.03 -0.81 9.27 22.25 0.21 -0.60 16 15 C -0.20 -5.52 5.47 -19.84 -0.11 -5.62 16 16 C 0.44 8.97 3.62 128.81 0.47 9.44 16 17 H 0.14 1.94 7.75 -2.39 -0.02 1.92 16 18 N -0.73 -11.33 4.34 -331.45 -1.44 -12.76 16 19 C 0.24 5.03 6.28 38.62 0.24 5.27 16 20 C -0.18 -2.79 10.01 22.31 0.22 -2.57 16 21 C -0.05 -0.79 10.03 22.34 0.22 -0.57 16 22 C -0.18 -3.73 10.02 22.29 0.22 -3.51 16 23 C -0.05 -1.35 9.65 22.46 0.22 -1.13 16 24 C -0.23 -6.71 5.85 -20.03 -0.12 -6.82 16 25 C 0.56 18.68 7.28 86.66 0.63 19.31 16 26 O -0.58 -23.18 15.39 -4.04 -0.06 -23.24 16 27 N -0.59 -15.43 2.13 -793.33 -1.69 -17.12 16 28 C 0.04 0.99 5.10 44.99 0.23 1.22 16 29 C -0.17 -3.67 9.27 30.62 0.28 -3.38 16 30 C -0.14 -2.17 10.09 30.62 0.31 -1.87 16 31 C -0.06 -2.00 9.27 22.25 0.21 -1.80 16 32 C -0.22 -9.47 9.21 22.40 0.21 -9.27 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.97 8.07 -2.39 -0.02 1.95 16 35 H 0.08 2.26 6.20 -2.38 -0.01 2.24 16 36 H 0.01 0.67 8.07 -2.39 -0.02 0.66 16 37 H 0.01 0.54 6.20 -2.39 -0.01 0.52 16 38 H 0.27 14.99 8.31 -92.72 -0.77 14.22 16 39 H 0.14 3.56 6.14 -2.91 -0.02 3.55 16 40 H 0.15 2.56 7.36 -2.91 -0.02 2.54 16 41 H 0.43 3.25 8.96 -92.71 -0.83 2.42 16 42 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 43 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 44 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 45 H 0.11 3.40 7.79 -2.91 -0.02 3.38 16 46 H 0.11 2.78 6.60 -2.39 -0.02 2.76 16 47 H 0.08 2.03 7.65 -2.39 -0.02 2.01 16 48 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.11 3.83 5.24 -2.91 -0.02 3.82 16 52 H 0.09 4.51 6.14 -2.91 -0.02 4.49 16 Total: -1.00 -78.41 420.13 3.41 -75.00 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.13 Total: 24.46 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 6.32 Total: -9.63 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -5.01 Total: -114.32 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.06 Total: -23.24 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -78.41 3.41 -75.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007886350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.862 kcal (2) G-P(sol) polarization free energy of solvation -78.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds