Wall clock time and date at job start Fri Apr 10 2020 14:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31027 * 125.58108 * 2 1 4 4 N 1.39887 * 109.24168 * 180.02562 * 3 2 1 5 5 C 1.36982 * 107.97486 * 0.23166 * 4 3 2 6 6 N 1.33705 * 120.79526 * 180.32040 * 5 4 3 7 7 C 1.31595 * 121.18713 * 359.73926 * 6 5 4 8 8 C 1.50697 * 119.83934 * 180.02562 * 7 6 5 9 9 C 1.39436 * 120.32787 * 0.02562 * 7 6 5 10 10 C 1.37015 * 132.36805 * 180.02562 * 4 3 2 11 11 N 1.37785 * 120.58430 * 0.02562 * 10 4 3 12 12 C 1.46906 * 111.00315 * 304.02317 * 11 10 4 13 13 C 1.53237 * 109.34031 * 172.74518 * 12 11 10 14 14 N 1.47087 * 108.52252 * 53.83363 * 13 12 11 15 15 C 1.36931 * 120.88343 * 128.83414 * 14 13 12 16 16 H 1.08001 * 120.00128 * 206.56835 * 15 14 13 17 17 C 1.38817 * 119.99976 * 26.56720 * 15 14 13 18 18 N 1.31618 * 119.99672 * 17.01787 * 17 15 14 19 19 Si 1.86794 * 119.99871 * 197.01701 * 17 15 14 20 20 H 1.48497 * 109.47422 * 60.00147 * 19 17 15 21 21 H 1.48499 * 109.47275 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47220 * 299.99905 * 19 17 15 23 23 C 1.47083 * 118.23492 * 308.81676 * 14 13 12 24 24 C 1.46901 * 111.00113 * 179.72297 * 11 10 4 25 25 C 1.40024 * 125.58750 * 180.56472 * 2 1 3 26 26 C 1.48114 * 126.39242 * 359.43740 * 25 2 1 27 27 C 1.39484 * 120.13552 * 115.47065 * 26 25 2 28 28 C 1.37977 * 119.86210 * 179.79174 * 27 26 25 29 29 C 1.38345 * 120.13536 * 0.49271 * 28 27 26 30 30 C 1.38351 * 120.27300 * 359.73754 * 29 28 27 31 31 C 1.37977 * 120.13892 * 0.02706 * 30 29 28 32 32 H 1.08992 * 109.47591 * 89.97559 * 1 2 3 33 33 H 1.09007 * 109.46946 * 209.97644 * 1 2 3 34 34 H 1.09002 * 109.47299 * 329.97043 * 1 2 3 35 35 H 1.09000 * 109.46734 * 269.98070 * 8 7 6 36 36 H 1.09001 * 109.46850 * 29.97542 * 8 7 6 37 37 H 1.08997 * 109.47458 * 149.97661 * 8 7 6 38 38 H 1.08007 * 120.40036 * 179.97438 * 9 7 6 39 39 H 1.08996 * 109.49115 * 292.70572 * 12 11 10 40 40 H 1.08998 * 109.48960 * 52.79008 * 12 11 10 41 41 H 1.08997 * 109.63104 * 294.12283 * 13 12 11 42 42 H 1.08995 * 109.63087 * 173.54069 * 13 12 11 43 43 H 0.97004 * 119.99471 * 180.02562 * 18 17 15 44 44 H 1.09011 * 109.62645 * 291.47221 * 23 14 13 45 45 H 1.08998 * 109.62857 * 170.89602 * 23 14 13 46 46 H 1.09001 * 109.49288 * 307.21779 * 24 11 10 47 47 H 1.09006 * 109.49126 * 67.29526 * 24 11 10 48 48 H 1.08001 * 120.06830 * 0.02562 * 27 26 25 49 49 H 1.08004 * 119.93217 * 180.25593 * 28 27 26 50 50 H 1.07999 * 119.86338 * 179.72141 * 29 28 27 51 51 H 1.08007 * 119.93037 * 180.02562 * 30 29 28 52 52 H 1.07993 * 120.07099 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2693 1.0656 0.0000 4 7 3.6117 0.6721 -0.0006 5 6 3.6508 -0.6972 -0.0062 6 7 4.8184 -1.3487 -0.0016 7 6 5.9620 -0.6976 0.0034 8 6 7.2603 -1.4627 0.0079 9 6 5.9784 0.6967 0.0044 10 6 4.7825 1.3838 -0.0004 11 7 4.7655 2.7615 0.0011 12 6 3.9911 3.2797 -1.1347 13 6 3.8436 4.7988 -0.9974 14 7 5.1829 5.3858 -0.8383 15 6 5.5922 6.4270 -1.6278 16 1 6.6439 6.5746 -1.8246 17 6 4.6555 7.2929 -2.1753 18 7 3.4336 7.3342 -1.6879 19 14 5.1293 8.3994 -3.6038 20 1 5.5620 7.5654 -4.7537 21 1 3.9592 9.2227 -4.0015 22 1 6.2435 9.2904 -3.1914 23 6 6.0706 4.8250 0.1917 24 6 6.1303 3.3049 0.0077 25 6 2.3218 -1.1387 -0.0112 26 6 1.8637 -2.5472 -0.0134 27 6 2.1317 -3.3690 -1.1081 28 6 1.7060 -4.6815 -1.1023 29 6 1.0058 -5.1798 -0.0181 30 6 0.7327 -4.3682 1.0685 31 6 1.1573 -3.0554 1.0768 32 1 -0.3634 0.0004 -1.0276 33 1 -0.3633 -0.8903 0.5135 34 1 -0.3634 0.8897 0.5143 35 1 7.5694 -1.6475 1.0367 36 1 7.1234 -2.4137 -0.5068 37 1 8.0271 -0.8802 -0.5028 38 1 6.9164 1.2322 0.0089 39 1 4.5097 3.0472 -2.0647 40 1 3.0039 2.8178 -1.1428 41 1 3.2362 5.0302 -0.1224 42 1 3.3707 5.2031 -1.8923 43 1 2.7790 7.9390 -2.0708 44 1 5.6771 5.0589 1.1810 45 1 7.0698 5.2466 0.0829 46 1 6.6945 2.8611 0.8279 47 1 6.6191 3.0720 -0.9384 48 1 2.6745 -2.9799 -1.9568 49 1 1.9165 -5.3200 -1.9475 50 1 0.6708 -6.2065 -0.0202 51 1 0.1860 -4.7631 1.9122 52 1 0.9432 -2.4228 1.9254 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020589532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:49 Heat of formation + Delta-G solvation = 166.355528 kcal Electronic energy + Delta-G solvation = -34560.382110 eV Core-core repulsion = 30334.130906 eV Total energy + Delta-G solvation = -4226.251203 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 377.191 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.49372 -40.80619 -39.71011 -39.02579 -36.93249 -34.86920 -33.61842 -33.16999 -32.39216 -31.74321 -31.61527 -30.71378 -28.77355 -28.56304 -28.28428 -25.51933 -24.78815 -23.86488 -23.30267 -23.03212 -22.52207 -21.25126 -20.98205 -19.33535 -18.81210 -17.93943 -17.87819 -17.35551 -17.26564 -16.71528 -16.16883 -16.00639 -15.91363 -15.60159 -15.50444 -15.40536 -15.15779 -14.82383 -14.69735 -14.40698 -14.27121 -14.22951 -14.00553 -13.97401 -13.37414 -13.36465 -13.27611 -13.19710 -13.08272 -12.68000 -12.64288 -12.53163 -12.45173 -12.31956 -12.27065 -12.03036 -11.87078 -11.83059 -11.76037 -11.66866 -10.86333 -10.65830 -10.40238 -10.12428 -9.75784 -9.59879 -8.85109 -8.53437 -7.95247 -5.41188 -0.48691 -0.17560 0.48166 0.59226 0.82895 1.44724 1.45198 1.47626 1.54286 2.15078 2.39586 2.46525 2.80201 2.95415 3.15518 3.22150 3.46832 3.53916 3.81377 3.93007 3.98688 4.03524 4.07595 4.14804 4.17692 4.19769 4.23498 4.30323 4.36687 4.40848 4.51406 4.59704 4.65018 4.66442 4.68207 4.71234 4.78153 4.79827 4.83127 4.86316 4.88197 4.99360 5.16051 5.17647 5.22777 5.23192 5.36720 5.41217 5.47220 5.57462 5.62888 5.68964 5.72709 5.76690 5.80946 6.18784 6.27445 6.46013 6.72282 7.02431 7.71687 8.26203 9.12819 Molecular weight = 377.19amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.002334 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.938631 B =11993.916105 C =13223.472403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.127 3.873 3 N -0.346 5.346 4 N -0.333 5.333 5 C 0.289 3.711 6 N -0.517 5.517 7 C 0.230 3.770 8 C -0.100 4.100 9 C -0.290 4.290 10 C 0.381 3.619 11 N -0.483 5.483 12 C 0.057 3.943 13 C 0.194 3.806 14 N -0.612 5.612 15 C -0.265 4.265 16 H 0.080 0.920 17 C -0.052 4.052 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.277 1.277 21 H -0.298 1.298 22 H -0.271 1.271 23 C 0.142 3.858 24 C 0.048 3.952 25 C -0.236 4.236 26 C 0.007 3.993 27 C -0.116 4.116 28 C -0.121 4.121 29 C -0.125 4.125 30 C -0.118 4.118 31 C -0.121 4.121 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.199 0.801 39 H 0.040 0.960 40 H 0.082 0.918 41 H -0.002 1.002 42 H 0.066 0.934 43 H 0.251 0.749 44 H 0.018 0.982 45 H 0.088 0.912 46 H 0.122 0.878 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.140 0.860 50 H 0.148 0.852 51 H 0.146 0.854 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 -25.356 4.018 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 N -0.170 5.170 4 N -0.106 5.106 5 C 0.061 3.939 6 N -0.234 5.234 7 C 0.071 3.929 8 C -0.157 4.157 9 C -0.318 4.318 10 C 0.165 3.835 11 N -0.197 5.197 12 C -0.069 4.069 13 C 0.067 3.933 14 N -0.336 5.336 15 C -0.394 4.394 16 H 0.098 0.902 17 C -0.248 4.248 18 N -0.584 5.584 19 Si 0.798 3.202 20 H -0.203 1.203 21 H -0.224 1.224 22 H -0.197 1.197 23 C 0.016 3.984 24 C -0.078 4.078 25 C -0.249 4.249 26 C 0.005 3.995 27 C -0.135 4.135 28 C -0.138 4.138 29 C -0.143 4.143 30 C -0.136 4.136 31 C -0.139 4.139 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.216 0.784 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.016 0.984 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.106 0.894 46 H 0.140 0.860 47 H 0.087 0.913 48 H 0.121 0.879 49 H 0.158 0.842 50 H 0.165 0.835 51 H 0.163 0.837 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.539 -24.538 4.385 24.974 hybrid contribution 0.003 1.326 -1.109 1.729 sum 1.542 -23.212 3.276 23.493 Atomic orbital electron populations 1.20416 0.83377 1.04677 1.04546 1.22982 0.98510 0.88715 0.93165 1.77629 0.83485 1.22667 1.33187 1.46943 1.05603 1.07409 1.50606 1.20864 0.95091 0.79111 0.98878 1.68056 0.95768 1.36790 1.22800 1.22381 0.94878 0.90788 0.84821 1.20956 0.88974 1.00350 1.05372 1.22229 0.96509 0.95455 1.17645 1.19794 0.83448 0.88699 0.91584 1.57788 1.18743 1.01471 1.41684 1.22809 0.97373 0.98736 0.87963 1.20505 0.86951 0.86682 0.99135 1.44422 1.13268 1.37185 1.38684 1.19548 0.93190 1.03835 1.22843 0.90247 1.25875 0.96701 0.99344 1.02862 1.70181 1.05376 1.40476 1.42322 0.85294 0.76866 0.78410 0.79604 1.20340 1.22411 1.19656 1.21224 0.95555 0.90584 0.91015 1.23070 0.84245 0.97039 1.03464 1.18249 0.87332 0.94317 1.25034 1.17819 0.97779 0.89193 0.94680 1.21229 1.00217 0.94646 0.97389 1.21300 0.98307 0.94621 0.99608 1.21493 0.98536 1.00880 0.93375 1.21344 0.99844 0.93020 0.99374 1.21324 0.98958 0.96426 0.97178 0.88807 0.88159 0.90035 0.87481 0.89647 0.87038 0.78392 0.94204 0.90008 0.98383 0.91572 0.94010 0.96438 0.89371 0.86033 0.91279 0.87896 0.84239 0.83474 0.83656 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 10.25 71.23 0.73 -0.93 16 2 C 0.13 4.08 7.20 43.11 0.31 4.39 16 3 N -0.35 -13.22 10.62 -47.20 -0.50 -13.72 16 4 N -0.33 -12.20 3.73 -189.16 -0.71 -12.90 16 5 C 0.29 9.95 7.89 133.57 1.05 11.01 16 6 N -0.52 -15.68 10.38 -180.46 -1.87 -17.55 16 7 C 0.23 5.42 6.82 42.88 0.29 5.72 16 8 C -0.10 -1.27 10.19 71.24 0.73 -0.54 16 9 C -0.29 -7.14 8.52 22.48 0.19 -6.95 16 10 C 0.38 12.70 6.49 131.75 0.86 13.55 16 11 N -0.48 -17.53 4.67 -699.08 -3.27 -20.79 16 12 C 0.06 2.40 5.47 86.38 0.47 2.88 16 13 C 0.19 9.73 5.42 86.35 0.47 10.19 16 14 N -0.61 -29.99 3.04 -698.11 -2.12 -32.11 16 15 C -0.26 -13.98 9.63 84.04 0.81 -13.17 16 16 H 0.08 3.95 7.88 -2.91 -0.02 3.93 16 17 C -0.05 -2.88 4.94 84.86 0.42 -2.46 16 18 N -0.94 -55.56 11.15 21.65 0.24 -55.31 16 19 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 C 0.14 5.41 6.69 86.35 0.58 5.99 16 24 C 0.05 1.45 4.29 86.38 0.37 1.82 16 25 C -0.24 -7.55 5.58 -19.78 -0.11 -7.66 16 26 C 0.01 0.18 5.43 -20.05 -0.11 0.07 16 27 C -0.12 -2.87 9.79 22.51 0.22 -2.65 16 28 C -0.12 -2.26 10.03 22.23 0.22 -2.04 16 29 C -0.13 -1.99 10.04 22.32 0.22 -1.77 16 30 C -0.12 -2.03 10.03 22.23 0.22 -1.80 16 31 C -0.12 -2.69 8.97 22.51 0.20 -2.49 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.10 1.89 7.18 -2.38 -0.02 1.87 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 0.84 8.09 -2.39 -0.02 0.82 16 38 H 0.20 3.38 5.84 -2.91 -0.02 3.37 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 3.58 5.92 -2.39 -0.01 3.57 16 41 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.07 3.72 6.12 -2.39 -0.01 3.70 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.09 3.00 7.95 -2.39 -0.02 2.98 16 46 H 0.12 2.66 6.88 -2.39 -0.02 2.64 16 47 H 0.07 1.94 7.82 -2.38 -0.02 1.92 16 48 H 0.10 2.71 8.06 -2.91 -0.02 2.68 16 49 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 50 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 51 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 52 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -74.95 417.44 2.89 -72.06 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.94 Total: 21.19 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 8.15 Total: 13.14 kcal Atomic # 7 Polarization: -144.16 SS G_CDS: -8.23 Total: -152.39 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -74.95 2.89 -72.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020589532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.415 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds