Wall clock time and date at job start Fri Apr 10 2020 15:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.46826 * 2 1 4 4 C 1.34231 * 116.99953 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99673 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99908 * 180.02562 * 4 3 2 7 7 H 1.08995 * 109.54112 * 60.09995 * 6 4 3 8 8 C 1.53120 * 109.50514 * 299.99511 * 6 4 3 9 9 C 1.53112 * 109.21677 * 182.44118 * 8 6 4 10 10 C 1.53029 * 109.28173 * 57.62270 * 9 8 6 11 11 N 1.46851 * 109.52309 * 300.82317 * 10 9 8 12 12 C 1.46896 * 110.99837 * 185.83492 * 11 10 9 13 13 C 1.52999 * 109.47442 * 293.95162 * 12 11 10 14 14 H 1.09001 * 109.47468 * 305.00135 * 13 12 11 15 15 O 1.42906 * 109.46851 * 65.00309 * 13 12 11 16 16 C 1.53003 * 109.47069 * 184.99830 * 13 12 11 17 17 O 1.42897 * 109.46926 * 175.00048 * 16 13 12 18 18 C 1.35677 * 117.00086 * 180.02562 * 17 16 13 19 19 C 1.39308 * 119.81674 * 359.72522 * 18 17 16 20 20 C 1.36443 * 120.18762 * 179.75961 * 19 18 17 21 21 C 1.40832 * 119.80456 * 0.51635 * 20 19 18 22 22 C 1.41214 * 120.17654 * 179.76123 * 21 20 19 23 23 H 1.08003 * 120.00307 * 204.52312 * 22 21 20 24 24 C 1.39896 * 119.99926 * 24.52448 * 22 21 20 25 25 N 1.30879 * 119.99979 * 17.95563 * 24 22 21 26 26 Si 1.86797 * 119.99939 * 197.95167 * 24 22 21 27 27 H 1.48495 * 109.47328 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47226 * 120.00218 * 26 24 22 29 29 H 1.48503 * 109.47410 * 240.00069 * 26 24 22 30 30 C 1.40832 * 119.64976 * 359.73949 * 21 20 19 31 31 C 1.36443 * 119.80766 * 359.97438 * 30 21 20 32 32 C 1.46846 * 111.19677 * 61.74352 * 11 10 9 33 33 H 1.09003 * 109.47290 * 60.00121 * 1 2 3 34 34 H 1.09002 * 109.47233 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47362 * 299.99886 * 1 2 3 36 36 H 1.08994 * 109.46823 * 240.00597 * 2 1 3 37 37 H 1.08995 * 109.46876 * 120.00374 * 2 1 3 38 38 H 1.09007 * 109.51967 * 62.49981 * 8 6 4 39 39 H 1.09001 * 109.52115 * 302.38310 * 8 6 4 40 40 H 1.09006 * 109.50503 * 177.56494 * 9 8 6 41 41 H 1.09004 * 109.50329 * 297.64216 * 9 8 6 42 42 H 1.09004 * 109.46587 * 60.83403 * 10 9 8 43 43 H 1.08995 * 109.46745 * 180.81351 * 10 9 8 44 44 H 1.08999 * 109.47429 * 53.95992 * 12 11 10 45 45 H 1.09001 * 109.47368 * 173.95109 * 12 11 10 46 46 H 0.96696 * 113.99870 * 60.00078 * 15 13 12 47 47 H 1.08993 * 109.47776 * 295.00317 * 16 13 12 48 48 H 1.08999 * 109.47170 * 55.00544 * 16 13 12 49 49 H 1.08005 * 119.90661 * 359.97438 * 19 18 17 50 50 H 1.07996 * 120.09625 * 180.25522 * 20 19 18 51 51 H 0.96996 * 120.00090 * 180.02562 * 25 24 22 52 52 H 1.07993 * 120.09957 * 180.02562 * 30 21 20 53 53 H 1.07994 * 119.91084 * 180.02562 * 31 30 21 54 54 H 1.08993 * 109.46706 * 58.27101 * 32 11 10 55 55 H 1.08999 * 109.46283 * 178.25835 * 32 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5864 3.4698 0.8916 8 6 3.4496 3.6860 -1.2488 9 6 4.0869 5.0780 -1.2727 10 6 5.6104 4.9369 -1.2402 11 7 6.0107 4.2164 -0.0248 12 6 7.4731 4.1830 0.1098 13 6 8.0706 3.3459 -1.0230 14 1 7.6117 2.3572 -1.0253 15 8 7.8207 3.9900 -2.2740 16 6 9.5798 3.2073 -0.8133 17 8 10.1198 2.3307 -1.8042 18 6 11.4557 2.0983 -1.7589 19 6 12.2325 2.7109 -0.7781 20 6 13.5759 2.4788 -0.7226 21 6 14.1785 1.6256 -1.6672 22 6 15.5690 1.3838 -1.6201 23 1 16.0954 1.0828 -2.5138 24 6 16.2647 1.5343 -0.4158 25 7 15.6128 1.5494 0.7190 26 14 18.1240 1.7134 -0.4273 27 1 18.6173 1.6651 -1.8271 28 1 18.5000 3.0130 0.1849 29 1 18.7330 0.6050 0.3510 30 6 13.3869 1.0145 -2.6588 31 6 12.0440 1.2526 -2.6968 32 6 5.4491 2.8597 -0.0026 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 -0.3634 0.5138 0.8900 36 1 1.8933 -0.5137 -0.8900 37 1 1.8933 -0.5139 0.8899 38 1 2.3640 3.7827 -1.2281 39 1 3.7491 3.1329 -2.1391 40 1 3.7891 5.5991 -2.1826 41 1 3.7548 5.6453 -0.4031 42 1 5.9425 4.3817 -2.1174 43 1 6.0670 5.9266 -1.2425 44 1 7.8661 5.1984 0.0576 45 1 7.7397 3.7393 1.0690 46 1 8.2010 4.8763 -2.3429 47 1 10.0502 4.1867 -0.8995 48 1 9.7727 2.7976 0.1782 49 1 11.7695 3.3688 -0.0575 50 1 14.1760 2.9513 0.0409 51 1 16.0952 1.6541 1.5540 52 1 13.8414 0.3586 -3.3866 53 1 11.4353 0.7845 -3.4562 54 1 5.7819 2.3144 -0.8856 55 1 5.7883 2.3409 0.8940 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025865959.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:02 Heat of formation + Delta-G solvation = -178.508333 kcal Electronic energy + Delta-G solvation = -34435.287544 eV Core-core repulsion = 29822.187500 eV Total energy + Delta-G solvation = -4613.100044 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 377.208 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -41.90315 -40.86199 -40.15935 -38.49442 -37.80621 -37.33035 -35.22873 -34.65569 -32.81759 -32.03195 -31.69274 -31.47543 -30.58310 -27.45084 -26.43993 -25.94910 -24.51510 -23.80483 -23.18706 -22.62293 -22.12049 -22.02096 -20.58871 -19.29417 -18.92048 -18.60105 -17.97140 -17.66198 -17.56350 -17.30414 -16.91848 -16.28714 -16.22116 -15.98257 -15.80185 -15.56997 -15.46271 -15.14389 -14.93195 -14.71407 -14.34226 -14.22520 -14.12176 -13.91609 -13.76612 -13.62657 -13.60680 -13.40882 -13.19286 -12.94541 -12.78967 -12.74849 -12.66108 -12.48232 -12.44651 -12.34135 -12.14252 -11.94491 -11.71963 -11.71074 -11.61427 -11.56623 -11.46885 -11.33698 -11.26629 -11.11146 -10.88172 -9.59651 -9.14930 -8.93635 -8.61978 -6.24449 0.91114 1.01650 1.06699 1.39124 1.49496 1.54469 1.54587 2.22128 2.45161 2.70248 2.92395 3.37720 3.44756 3.67745 3.68445 3.77251 3.79742 3.92514 3.96726 4.04709 4.05170 4.12783 4.17757 4.26431 4.29783 4.32169 4.35590 4.39071 4.44923 4.56369 4.67369 4.73354 4.81965 4.83716 4.86905 4.90379 4.92708 4.96924 5.01451 5.04835 5.10394 5.13311 5.13355 5.22548 5.34977 5.40651 5.46680 5.49958 5.63529 5.92776 5.94804 6.04025 6.07629 6.21452 6.54061 6.63275 6.72093 6.78300 6.93335 7.08071 8.35246 Molecular weight = 377.21amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.001503 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.203019 B =18618.774364 C =19379.582108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.468 3.532 5 O -0.543 6.543 6 C -0.069 4.069 7 H 0.135 0.865 8 C -0.107 4.107 9 C -0.109 4.109 10 C 0.029 3.971 11 N -0.519 5.519 12 C 0.035 3.965 13 C 0.086 3.914 14 H 0.084 0.916 15 O -0.558 6.558 16 C 0.032 3.968 17 O -0.332 6.332 18 C -0.003 4.003 19 C -0.174 4.174 20 C -0.153 4.153 21 C 0.054 3.946 22 C -0.499 4.499 23 H 0.075 0.925 24 C 0.034 3.966 25 N -0.831 5.831 26 Si 0.982 3.018 27 H -0.259 1.259 28 H -0.263 1.263 29 H -0.267 1.267 30 C -0.206 4.206 31 C -0.124 4.124 32 C 0.067 3.933 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.387 0.613 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.121 0.879 50 H 0.109 0.891 51 H 0.287 0.713 52 H 0.108 0.892 53 H 0.114 0.886 54 H 0.027 0.973 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.320 8.419 1.943 29.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.271 6.271 4 C 0.312 3.688 5 O -0.433 6.433 6 C -0.088 4.088 7 H 0.153 0.847 8 C -0.145 4.145 9 C -0.147 4.147 10 C -0.098 4.098 11 N -0.241 5.241 12 C -0.093 4.093 13 C 0.025 3.975 14 H 0.102 0.898 15 O -0.366 6.366 16 C -0.045 4.045 17 O -0.248 6.248 18 C -0.046 4.046 19 C -0.193 4.193 20 C -0.172 4.172 21 C 0.051 3.949 22 C -0.529 4.529 23 H 0.093 0.907 24 C -0.179 4.179 25 N -0.458 5.458 26 Si 0.803 3.197 27 H -0.182 1.182 28 H -0.188 1.188 29 H -0.192 1.192 30 C -0.226 4.226 31 C -0.143 4.143 32 C -0.062 4.062 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.127 0.873 45 H 0.112 0.888 46 H 0.236 0.764 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.138 0.862 50 H 0.126 0.874 51 H 0.098 0.902 52 H 0.126 0.874 53 H 0.132 0.868 54 H 0.045 0.955 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.771 7.750 2.342 29.888 hybrid contribution 1.902 -0.645 -0.185 2.017 sum -26.869 7.105 2.157 27.876 Atomic orbital electron populations 1.21815 0.90084 1.04352 1.03916 1.23291 0.97310 0.79335 1.02312 1.86499 1.23667 1.33486 1.83476 1.24133 0.80801 0.92909 0.71002 1.90693 1.61264 1.44531 1.46803 1.21067 0.94964 0.88640 1.04135 0.84725 1.21571 1.02117 0.96544 0.94287 1.21585 0.93882 0.95436 1.03750 1.22609 0.96472 0.99277 0.91449 1.62268 1.08226 1.14561 1.39042 1.22828 0.87272 1.01710 0.97539 1.22643 0.91210 0.97789 0.85842 0.89790 1.86597 1.78237 1.35564 1.36178 1.23501 0.95297 0.94001 0.91652 1.85877 1.19968 1.65308 1.53678 1.18727 0.82322 1.03900 0.99693 1.20812 0.94967 1.03708 0.99801 1.20917 0.93860 1.00688 1.01777 1.17971 0.94140 0.90743 0.92000 1.19740 0.93428 1.43306 0.96396 0.90679 1.26726 1.05850 0.91308 0.94054 1.69889 1.40307 1.36290 0.99326 0.85159 0.76027 0.78932 0.79575 1.18235 1.18793 1.19204 1.20786 0.92893 1.05097 1.03789 1.19885 0.94606 1.00549 0.99276 1.21851 0.92610 0.90505 1.01213 0.91083 0.88443 0.90952 0.91835 0.91523 0.88899 0.92999 0.89429 0.90033 0.92297 0.89339 0.87319 0.88818 0.76352 0.91255 0.92142 0.86150 0.87357 0.90196 0.87374 0.86835 0.95510 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 10.29 71.98 0.74 -0.45 16 2 C 0.05 0.76 6.19 71.98 0.45 1.20 16 3 O -0.35 -6.39 10.15 -51.43 -0.52 -6.91 16 4 C 0.47 10.00 7.26 71.23 0.52 10.52 16 5 O -0.54 -15.69 15.74 21.96 0.35 -15.35 16 6 C -0.07 -1.14 2.79 -11.48 -0.03 -1.17 16 7 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 8 C -0.11 -1.45 5.21 30.67 0.16 -1.29 16 9 C -0.11 -1.22 6.09 30.64 0.19 -1.03 16 10 C 0.03 0.42 4.61 86.32 0.40 0.82 16 11 N -0.52 -8.76 4.86 -896.36 -4.36 -13.11 16 12 C 0.04 0.60 5.18 86.30 0.45 1.05 16 13 C 0.09 2.06 2.93 30.59 0.09 2.15 16 14 H 0.08 2.45 6.23 -2.39 -0.01 2.43 16 15 O -0.56 -13.04 9.98 -144.34 -1.44 -14.48 16 16 C 0.03 0.95 4.37 71.98 0.31 1.27 16 17 O -0.33 -13.61 10.09 -85.31 -0.86 -14.47 16 18 C 0.00 -0.12 6.71 22.79 0.15 0.03 16 19 C -0.17 -8.19 8.96 22.11 0.20 -7.99 16 20 C -0.15 -8.15 8.64 22.49 0.19 -7.95 16 21 C 0.05 2.97 5.57 -21.28 -0.12 2.85 16 22 C -0.50 -27.39 9.04 23.40 0.21 -27.18 16 23 H 0.08 3.99 7.91 -2.91 -0.02 3.96 16 24 C 0.03 1.76 5.13 85.24 0.44 2.19 16 25 N -0.83 -43.86 10.96 21.82 0.24 -43.63 16 26 Si 0.98 38.54 29.60 68.60 2.03 40.57 16 27 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 28 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 29 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 30 C -0.21 -10.58 9.74 22.49 0.22 -10.36 16 31 C -0.12 -5.99 9.92 22.11 0.22 -5.77 16 32 C 0.07 1.36 3.42 86.33 0.30 1.66 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 37 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 38 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.06 1.12 5.54 -2.39 -0.01 1.11 16 43 H 0.09 1.04 8.06 -2.39 -0.02 1.02 16 44 H 0.11 1.41 8.06 -2.39 -0.02 1.40 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.39 6.20 9.04 -74.06 -0.67 5.53 16 47 H 0.07 1.86 7.63 -2.39 -0.02 1.84 16 48 H 0.06 1.79 7.66 -2.39 -0.02 1.78 16 49 H 0.12 4.85 6.27 -2.91 -0.02 4.83 16 50 H 0.11 5.95 6.16 -2.91 -0.02 5.93 16 51 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 52 H 0.11 5.18 8.06 -2.91 -0.02 5.16 16 53 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 54 H 0.03 0.70 6.43 -2.39 -0.02 0.68 16 55 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -70.11 435.82 0.74 -69.38 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.22 Total: 37.45 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 5.08 Total: -39.45 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -4.12 Total: -56.74 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -2.48 Total: -51.21 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -70.11 0.74 -69.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025865959.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.131 kcal (2) G-P(sol) polarization free energy of solvation -70.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds