Wall clock time and date at job start Fri Apr 10 2020 14:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00352 * 2 1 4 4 C 1.53002 * 109.47072 * 66.04651 * 3 2 1 5 5 C 1.52993 * 109.46967 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46949 * 179.97438 * 5 4 3 7 7 C 1.38233 * 119.99924 * 269.72510 * 6 5 4 8 8 C 1.38233 * 120.00211 * 179.76848 * 7 6 5 9 9 C 1.38247 * 119.99640 * 0.50560 * 8 7 6 10 10 C 1.38230 * 119.99578 * 359.74771 * 9 8 7 11 11 C 1.38228 * 120.00533 * 0.02562 * 10 9 8 12 12 C 1.46898 * 111.00093 * 236.04114 * 2 1 3 13 13 C 1.50700 * 109.47327 * 293.96006 * 12 2 1 14 14 N 1.29825 * 118.34950 * 359.97438 * 13 12 2 15 15 C 1.35634 * 121.62608 * 179.97438 * 14 13 12 16 16 C 1.39634 * 121.62351 * 180.02562 * 15 14 13 17 17 C 1.37714 * 119.69371 * 179.97438 * 16 15 14 18 18 C 1.38875 * 120.82549 * 0.02562 * 17 16 15 19 19 C 1.37793 * 120.57045 * 359.97275 * 18 17 16 20 20 C 1.39369 * 119.51815 * 0.02562 * 19 18 17 21 21 C 1.46965 * 121.90390 * 180.02562 * 20 19 18 22 22 O 1.21720 * 121.28660 * 359.97438 * 21 20 19 23 23 N 1.35337 * 117.42545 * 179.97438 * 21 20 19 24 24 C 1.37102 * 119.71759 * 179.97438 * 23 21 20 25 25 H 1.08009 * 120.00109 * 138.88195 * 24 23 21 26 26 C 1.39076 * 120.00207 * 318.88144 * 24 23 21 27 27 N 1.31254 * 119.99698 * 340.39287 * 26 24 23 28 28 Si 1.86800 * 120.00027 * 160.39298 * 26 24 23 29 29 H 1.48497 * 109.47068 * 0.02562 * 28 26 24 30 30 H 1.48502 * 109.47264 * 119.99874 * 28 26 24 31 31 H 1.48493 * 109.47400 * 239.99895 * 28 26 24 32 32 H 1.08998 * 109.47408 * 183.95624 * 1 2 3 33 33 H 1.08994 * 109.46939 * 303.95794 * 1 2 3 34 34 H 1.09000 * 109.46975 * 63.95410 * 1 2 3 35 35 H 1.09006 * 109.47190 * 186.04332 * 3 2 1 36 36 H 1.08992 * 109.47002 * 306.04405 * 3 2 1 37 37 H 1.09006 * 109.46853 * 299.99887 * 4 3 2 38 38 H 1.08992 * 109.47408 * 60.00003 * 4 3 2 39 39 H 1.08997 * 109.47205 * 299.99742 * 5 4 3 40 40 H 1.09006 * 109.47723 * 59.99965 * 5 4 3 41 41 H 1.08004 * 120.00169 * 359.97438 * 7 6 5 42 42 H 1.08001 * 120.00358 * 180.22851 * 8 7 6 43 43 H 1.07994 * 119.99754 * 179.72377 * 9 8 7 44 44 H 1.08002 * 119.99647 * 179.97438 * 10 9 8 45 45 H 1.08003 * 120.00155 * 179.97438 * 11 10 9 46 46 H 1.08996 * 109.47193 * 173.95534 * 12 2 1 47 47 H 1.09005 * 109.46924 * 53.95790 * 12 2 1 48 48 H 1.07999 * 120.15623 * 0.02562 * 16 15 14 49 49 H 1.07999 * 119.58892 * 180.28306 * 17 16 15 50 50 H 1.07998 * 119.71415 * 179.97438 * 18 17 16 51 51 H 1.08006 * 120.24189 * 180.02562 * 19 18 17 52 52 H 0.97003 * 119.99888 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1794 3.4859 1.3180 6 6 1.8204 4.1618 2.6162 7 6 0.6370 4.8682 2.7235 8 6 0.3053 5.4842 3.9157 9 6 1.1621 5.4025 4.9976 10 6 2.3479 4.7006 4.8886 11 6 2.6773 4.0807 3.6978 12 6 1.9955 -0.7661 -1.1375 13 6 1.6368 -2.2205 -0.9728 14 7 0.9601 -2.5734 0.0774 15 6 0.6015 -3.8638 0.2919 16 6 -0.1268 -4.2433 1.4212 17 6 -0.4703 -5.5650 1.5990 18 6 -0.1010 -6.5276 0.6687 19 6 0.6178 -6.1781 -0.4537 20 6 0.9756 -4.8459 -0.6528 21 6 1.7411 -4.4149 -1.8309 22 8 2.0935 -5.2110 -2.6817 23 7 2.0391 -3.0988 -1.9335 24 6 2.7518 -2.6454 -3.0133 25 1 2.4774 -1.7158 -3.4899 26 6 3.8283 -3.3824 -3.4951 27 7 4.4063 -4.2775 -2.7286 28 14 4.4516 -3.0984 -5.2330 29 1 3.6355 -2.0431 -5.8853 30 1 5.8717 -2.6665 -5.1853 31 1 4.3437 -4.3593 -6.0099 32 1 -0.3634 -1.0252 0.0709 33 1 -0.3633 0.5740 0.8524 34 1 -0.3633 0.4512 -0.9233 35 1 3.0798 1.3443 -0.1082 36 1 1.5613 1.9272 -0.8309 37 1 0.5472 2.0845 1.4265 38 1 2.0658 1.5015 2.1492 39 1 3.2636 3.4592 1.2096 40 1 1.7447 4.0417 0.4871 41 1 -0.0301 4.9360 1.8768 42 1 -0.6210 6.0330 4.0007 43 1 0.9052 5.8875 5.9277 44 1 3.0175 4.6371 5.7337 45 1 3.6040 3.5326 3.6126 46 1 3.0797 -0.6612 -1.1755 47 1 1.5611 -0.3873 -2.0628 48 1 -0.4201 -3.5036 2.1514 49 1 -1.0376 -5.8559 2.4708 50 1 -0.3796 -7.5591 0.8263 51 1 0.9019 -6.9311 -1.1741 52 1 5.1574 -4.7913 -3.0645 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052802789.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:08 Heat of formation + Delta-G solvation = 37.727001 kcal Electronic energy + Delta-G solvation = -33585.124915 eV Core-core repulsion = 29321.003209 eV Total energy + Delta-G solvation = -4264.121706 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 377.184 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.21859 -40.15256 -39.26849 -39.00171 -37.58443 -35.56197 -35.00588 -33.71808 -32.00062 -31.69141 -31.68912 -30.38451 -28.68337 -27.65011 -27.30829 -25.17826 -24.56627 -23.38030 -23.02460 -22.58510 -21.70010 -21.44974 -20.51030 -19.49457 -18.54828 -17.59492 -17.50880 -16.82356 -16.64699 -16.57959 -16.16479 -15.98151 -15.83213 -15.77731 -15.48721 -15.44998 -15.06788 -14.80170 -14.60784 -14.19420 -14.07784 -14.03871 -13.86096 -13.74940 -13.63052 -13.45752 -13.02379 -12.95658 -12.83048 -12.61342 -12.59872 -12.57922 -12.37586 -12.29313 -12.16170 -12.01697 -11.82274 -11.60416 -11.33358 -11.26863 -10.78559 -10.43434 -10.19325 -9.90614 -9.74631 -9.50867 -9.11003 -8.77734 -8.51972 -6.47661 -0.08590 0.09808 0.52988 0.57521 1.32895 1.40140 1.50969 1.54892 2.01088 2.26659 2.45189 2.88264 2.93932 3.16854 3.29504 3.40669 3.82415 3.90050 3.95749 4.00932 4.17811 4.20080 4.24053 4.25202 4.32025 4.37071 4.47428 4.50685 4.55356 4.57580 4.60963 4.68569 4.71158 4.77585 4.78223 4.84659 4.94042 4.98528 4.99110 5.15493 5.18518 5.21700 5.25603 5.33419 5.36943 5.38235 5.49748 5.57259 5.60625 5.65741 5.69981 5.79175 5.83291 6.00243 6.13575 6.21325 6.26835 6.40134 6.62980 6.86156 7.43350 7.64640 8.46637 Molecular weight = 377.18amu Principal moments of inertia in cm(-1) A = 0.008873 B = 0.002273 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.022471 B =12314.429689 C =14780.662468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.530 5.530 3 C 0.056 3.944 4 C -0.094 4.094 5 C -0.074 4.074 6 C -0.088 4.088 7 C -0.130 4.130 8 C -0.128 4.128 9 C -0.137 4.137 10 C -0.130 4.130 11 C -0.133 4.133 12 C 0.134 3.866 13 C 0.352 3.648 14 N -0.529 5.529 15 C 0.136 3.864 16 C -0.125 4.125 17 C -0.072 4.072 18 C -0.151 4.151 19 C -0.068 4.068 20 C -0.240 4.240 21 C 0.495 3.505 22 O -0.554 6.554 23 N -0.371 5.371 24 C -0.401 4.401 25 H 0.123 0.877 26 C 0.030 3.970 27 N -0.849 5.849 28 Si 0.992 3.008 29 H -0.242 1.242 30 H -0.262 1.262 31 H -0.291 1.291 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.017 0.983 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.126 0.874 46 H 0.099 0.901 47 H 0.064 0.936 48 H 0.150 0.850 49 H 0.171 0.829 50 H 0.157 0.843 51 H 0.109 0.891 52 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.535 16.470 12.314 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.254 5.254 3 C -0.072 4.072 4 C -0.132 4.132 5 C -0.112 4.112 6 C -0.088 4.088 7 C -0.148 4.148 8 C -0.146 4.146 9 C -0.155 4.155 10 C -0.148 4.148 11 C -0.151 4.151 12 C 0.004 3.996 13 C 0.088 3.912 14 N -0.255 5.255 15 C 0.021 3.979 16 C -0.145 4.145 17 C -0.092 4.092 18 C -0.169 4.169 19 C -0.087 4.087 20 C -0.247 4.247 21 C 0.291 3.709 22 O -0.433 6.433 23 N -0.075 5.075 24 C -0.527 4.527 25 H 0.140 0.860 26 C -0.181 4.181 27 N -0.479 5.479 28 Si 0.813 3.187 29 H -0.165 1.165 30 H -0.187 1.187 31 H -0.217 1.217 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.035 0.965 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.152 0.848 45 H 0.144 0.856 46 H 0.117 0.883 47 H 0.081 0.919 48 H 0.168 0.832 49 H 0.189 0.811 50 H 0.175 0.825 51 H 0.127 0.873 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.255 16.056 12.824 21.792 hybrid contribution 0.774 -0.848 -2.351 2.616 sum -6.481 15.208 10.473 19.570 Atomic orbital electron populations 1.22521 0.86574 1.03242 0.99767 1.61604 1.09051 1.13367 1.41345 1.22210 1.00362 0.86903 0.97681 1.21408 1.01082 0.94025 0.96715 1.20549 1.01848 0.94620 0.94209 1.20071 0.94983 0.97685 0.96107 1.21303 0.96721 0.98123 0.98677 1.21445 1.00261 0.99726 0.93174 1.21442 0.94700 0.99801 0.99553 1.21424 0.97633 0.97702 0.97995 1.21305 1.00196 1.00226 0.93386 1.20689 1.01095 0.84808 0.92967 1.23470 0.90410 0.94377 0.82896 1.68571 1.21968 1.16051 1.18867 1.19354 0.95736 0.88290 0.94479 1.21007 0.99769 0.97618 0.96090 1.21570 0.97064 0.91390 0.99127 1.21341 1.00308 1.01444 0.93822 1.21007 0.96218 0.93360 0.98161 1.21019 1.08066 0.97585 0.98056 1.18850 0.81535 0.83021 0.87480 1.90586 1.55014 1.53066 1.44606 1.42382 1.39653 1.07087 1.18425 1.20010 1.12087 1.11848 1.08782 0.85962 1.26415 0.94579 0.94091 1.03038 1.69940 1.18997 1.21186 1.37820 0.84943 0.78719 0.78506 0.76505 1.16486 1.18713 1.21719 0.90925 0.90283 0.96482 0.90652 0.93909 0.91785 0.92359 0.90487 0.90091 0.85102 0.84445 0.84464 0.84753 0.85629 0.88264 0.91853 0.83211 0.81123 0.82532 0.87304 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 8.97 127.69 1.14 1.91 16 2 N -0.53 -16.07 4.42 -927.07 -4.10 -20.18 16 3 C 0.06 1.29 4.96 86.30 0.43 1.71 16 4 C -0.09 -1.90 5.13 30.59 0.16 -1.74 16 5 C -0.07 -1.23 5.35 29.85 0.16 -1.07 16 6 C -0.09 -1.60 5.13 -19.87 -0.10 -1.70 16 7 C -0.13 -2.19 9.70 22.27 0.22 -1.97 16 8 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 9 C -0.14 -2.07 10.05 22.27 0.22 -1.85 16 10 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 11 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 12 C 0.13 4.85 4.08 85.56 0.35 5.19 16 13 C 0.35 15.98 7.22 137.94 1.00 16.97 16 14 N -0.53 -22.84 7.06 -179.54 -1.27 -24.11 16 15 C 0.14 5.90 6.63 39.65 0.26 6.17 16 16 C -0.13 -4.18 10.03 22.48 0.23 -3.95 16 17 C -0.07 -1.98 10.00 22.30 0.22 -1.75 16 18 C -0.15 -4.66 10.02 22.32 0.22 -4.44 16 19 C -0.07 -2.85 9.68 22.44 0.22 -2.64 16 20 C -0.24 -11.79 5.89 -19.96 -0.12 -11.91 16 21 C 0.49 28.34 6.93 86.44 0.60 28.93 16 22 O -0.55 -35.22 14.28 -4.41 -0.06 -35.28 16 23 N -0.37 -19.71 2.68 -460.24 -1.23 -20.95 16 24 C -0.40 -21.00 8.24 84.07 0.69 -20.31 16 25 H 0.12 5.71 7.07 -2.91 -0.02 5.69 16 26 C 0.03 1.62 4.36 84.98 0.37 1.99 16 27 N -0.85 -50.15 11.54 21.68 0.25 -49.89 16 28 Si 0.99 41.74 29.60 68.60 2.03 43.77 16 29 H -0.24 -9.20 7.11 99.48 0.71 -8.49 16 30 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 31 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 32 H 0.07 2.44 5.64 -2.39 -0.01 2.43 16 33 H 0.08 1.92 6.30 -2.39 -0.02 1.90 16 34 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.07 1.72 7.93 -2.38 -0.02 1.70 16 36 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 37 H 0.06 1.29 6.47 -2.38 -0.02 1.27 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 40 H 0.08 1.17 8.08 -2.38 -0.02 1.15 16 41 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.10 3.67 7.83 -2.39 -0.02 3.65 16 47 H 0.06 2.16 7.56 -2.38 -0.02 2.14 16 48 H 0.15 4.23 8.06 -2.91 -0.02 4.20 16 49 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 50 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 51 H 0.11 4.76 7.83 -2.91 -0.02 4.74 16 52 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -74.50 423.04 3.47 -71.03 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.92 Total: 31.89 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 6.93 Total: 3.72 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -6.35 Total: -115.13 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.06 Total: -35.28 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -74.50 3.47 -71.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052802789.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.755 kcal (2) G-P(sol) polarization free energy of solvation -74.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds