Wall clock time and date at job start Fri Apr 10 2020 14:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39735 * 120.19889 * 115.24739 * 3 2 1 5 5 C 1.37878 * 119.90996 * 180.29152 * 4 3 2 6 6 Br 1.89098 * 119.84037 * 179.97438 * 5 4 3 7 7 C 1.38640 * 120.31985 * 359.97438 * 5 4 3 8 8 C 1.38014 * 120.41703 * 359.97438 * 7 5 4 9 9 C 1.38867 * 120.08175 * 0.02562 * 8 7 5 10 10 N 1.39070 * 120.16524 * 179.97438 * 9 8 7 11 11 C 1.46502 * 119.99825 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.47150 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00273 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00062 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00184 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99949 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46917 * 60.00441 * 16 14 12 18 18 H 1.48502 * 109.46759 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47314 * 300.00095 * 16 14 12 20 20 H 1.08003 * 120.05016 * 0.24980 * 4 3 2 21 21 H 1.08011 * 119.79244 * 179.97438 * 7 5 4 22 22 H 1.08000 * 119.95930 * 180.02562 * 8 7 5 23 23 H 0.97004 * 120.00466 * 180.02562 * 10 9 8 24 24 H 1.09000 * 109.47412 * 299.99897 * 11 10 9 25 25 H 1.09000 * 109.46983 * 60.00416 * 11 10 9 26 26 H 0.96996 * 120.00138 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 0.5161 -1.0923 5 6 4.6494 0.5082 -1.0886 6 35 5.5983 1.2056 -2.5682 7 6 5.3435 -0.0085 -0.0054 8 6 4.6630 -0.5200 1.0809 9 6 3.2744 -0.5206 1.0951 10 7 2.5870 -1.0360 2.1886 11 6 3.3278 -1.5797 3.3296 12 6 2.3561 -2.0704 4.3717 13 1 1.2930 -1.9853 4.2014 14 6 2.8242 -2.6269 5.5431 15 7 4.1188 -2.7300 5.7509 16 14 1.6197 -3.2344 6.8352 17 1 0.7615 -4.2965 6.2514 18 1 2.3707 -3.7845 7.9923 19 1 0.7694 -2.1049 7.2894 20 1 2.7345 0.9195 -1.9387 21 1 6.4236 -0.0107 -0.0117 22 1 5.2111 -0.9203 1.9210 23 1 1.6170 -1.0356 2.1960 24 1 3.9516 -2.4089 2.9961 25 1 3.9580 -0.8004 3.7583 26 1 4.4481 -3.1211 6.5751 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132713702.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:18 Heat of formation + Delta-G solvation = 31.540581 kcal Electronic energy + Delta-G solvation = -13209.312266 eV Core-core repulsion = 10719.106432 eV Total energy + Delta-G solvation = -2490.205834 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 279.991 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.76667 -37.47591 -37.03223 -34.77564 -32.60718 -32.19281 -30.11208 -27.97085 -25.28115 -24.63276 -22.27088 -20.05621 -18.78803 -17.64842 -17.31937 -16.42431 -15.68287 -15.58432 -15.12181 -14.91583 -14.64355 -14.20774 -14.05385 -13.89205 -13.64610 -12.99791 -12.84698 -12.65210 -12.41061 -12.05928 -12.03462 -11.52180 -11.11347 -10.87355 -10.46887 -10.04504 -8.41538 -8.34527 -6.47251 -0.13927 0.38165 0.77959 1.40123 1.40581 1.49034 1.60903 1.89312 2.28965 2.59025 2.83635 2.93434 3.01684 3.78858 4.09588 4.33348 4.36347 4.80322 4.89393 5.00358 5.13914 5.26279 5.26934 5.44452 5.65931 5.83614 6.17512 6.46868 6.58666 6.80875 7.24213 8.75984 Molecular weight = 279.99amu Principal moments of inertia in cm(-1) A = 0.033556 B = 0.004098 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.233482 B = 6830.483889 C = 7649.571151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.281 3.719 3 C -0.137 4.137 4 C 0.021 3.979 5 C -0.169 4.169 6 Br -0.042 7.042 7 C 0.003 3.997 8 C -0.203 4.203 9 C 0.275 3.725 10 N -0.716 5.716 11 C 0.263 3.737 12 C -0.567 4.567 13 H 0.061 0.939 14 C 0.021 3.979 15 N -0.916 5.916 16 Si 0.966 3.034 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.270 1.270 20 H 0.157 0.843 21 H 0.160 0.840 22 H 0.134 0.866 23 H 0.394 0.606 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 7.313 -15.461 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.032 4.032 3 C -0.147 4.147 4 C -0.001 4.001 5 C -0.250 4.250 6 Br 0.042 6.958 7 C -0.018 4.018 8 C -0.227 4.227 9 C 0.160 3.840 10 N -0.335 5.335 11 C 0.141 3.859 12 C -0.604 4.604 13 H 0.079 0.921 14 C -0.181 4.181 15 N -0.554 5.554 16 Si 0.791 3.209 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.196 1.196 20 H 0.174 0.826 21 H 0.177 0.823 22 H 0.152 0.848 23 H 0.228 0.772 24 H 0.032 0.968 25 H 0.032 0.968 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.950 7.396 -15.642 17.997 hybrid contribution -0.713 -0.623 1.328 1.631 sum 4.237 6.773 -14.315 16.393 Atomic orbital electron populations 1.81229 1.12815 1.11694 1.08842 1.25637 0.92562 0.92193 0.92795 1.15353 0.83517 1.17216 0.98639 1.20906 0.92235 0.91739 0.95247 1.21224 0.93813 1.13046 0.96944 1.96659 1.74643 1.85140 1.39337 1.21228 1.01221 0.89978 0.89341 1.20746 0.91047 1.09078 1.01799 1.18257 0.92522 0.87778 0.85459 1.45495 1.08864 1.62067 1.17094 1.18865 0.92034 0.92723 0.82248 1.21486 0.93528 1.42277 1.03152 0.92101 1.25704 0.97097 0.95245 1.00037 1.70000 1.13800 1.44360 1.27200 0.85477 0.78622 0.78763 0.78057 1.19546 1.20243 1.19555 0.82576 0.82270 0.84809 0.77248 0.96808 0.96803 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.59 18.54 19.00 0.35 -16.24 15 2 C 0.28 9.00 14.09 88.33 1.24 10.24 15 3 C -0.14 -3.94 5.76 -21.16 -0.12 -4.06 15 4 C 0.02 0.49 9.48 22.55 0.21 0.70 15 5 C -0.17 -3.69 6.22 22.28 0.14 -3.56 15 6 Br -0.04 -0.78 33.69 -20.37 -0.69 -1.47 15 7 C 0.00 0.08 9.76 22.31 0.22 0.30 15 8 C -0.20 -5.97 9.29 22.37 0.21 -5.76 15 9 C 0.28 9.06 6.66 38.66 0.26 9.31 15 10 N -0.72 -28.34 5.63 -342.44 -1.93 -30.27 15 11 C 0.26 12.45 4.66 85.63 0.40 12.85 15 12 C -0.57 -29.66 9.28 25.60 0.24 -29.42 15 13 H 0.06 3.12 7.60 -2.91 -0.02 3.10 15 14 C 0.02 1.08 5.46 84.65 0.46 1.54 15 15 N -0.92 -50.30 13.29 21.45 0.28 -50.01 15 16 Si 0.97 41.53 29.54 68.60 2.03 43.56 15 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 18 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 19 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 20 H 0.16 2.87 8.06 -2.91 -0.02 2.85 15 21 H 0.16 2.82 8.06 -2.91 -0.02 2.79 15 22 H 0.13 4.25 6.72 -2.91 -0.02 4.23 15 23 H 0.39 15.70 7.18 -92.71 -0.67 15.03 15 24 H 0.01 0.70 7.94 -2.39 -0.02 0.68 15 25 H 0.01 0.70 7.94 -2.39 -0.02 0.69 15 26 H 0.27 14.04 8.31 -92.71 -0.77 13.27 15 Total: -1.00 -55.69 264.46 3.86 -51.83 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.56 Total: 10.44 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 3.26 Total: -7.84 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -1.29 Total: -96.52 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -0.69 Total: -1.47 kcal Total: -55.69 3.86 -51.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132713702.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.366 kcal (2) G-P(sol) polarization free energy of solvation -55.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds