Wall clock time and date at job start Fri Apr 10 2020 14:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39821 * 120.07525 * 297.30203 * 3 2 1 5 5 C 1.37654 * 119.94176 * 179.97438 * 4 3 2 6 6 C 1.39158 * 120.08422 * 359.97438 * 5 4 3 7 7 N 1.39237 * 119.92372 * 180.28370 * 6 5 4 8 8 C 1.46498 * 119.99968 * 359.71910 * 7 6 5 9 9 C 1.50699 * 109.46783 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00405 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00064 * 180.02562 * 9 8 7 12 12 N 1.31523 * 119.99587 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00217 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47140 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46948 * 119.99749 * 13 11 9 16 16 H 1.48496 * 109.47201 * 239.99830 * 13 11 9 17 17 C 1.39235 * 120.14696 * 0.02562 * 6 5 4 18 18 Br 1.89097 * 119.96852 * 180.02562 * 17 6 5 19 19 C 1.37735 * 120.05977 * 0.02562 * 17 6 5 20 20 H 1.07997 * 120.02660 * 359.95310 * 4 3 2 21 21 H 1.07997 * 119.95652 * 180.02562 * 5 4 3 22 22 H 0.97008 * 119.99674 * 179.72695 * 7 6 5 23 23 H 1.09004 * 109.47317 * 300.00219 * 8 7 6 24 24 H 1.08999 * 109.46747 * 60.00810 * 8 7 6 25 25 H 0.96999 * 119.99693 * 179.97438 * 12 11 9 26 26 H 1.08001 * 120.04577 * 179.97438 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 -0.5540 1.0752 5 6 4.6455 -0.5524 1.0721 6 6 5.3400 0.0000 0.0002 7 7 6.7323 -0.0055 -0.0022 8 6 7.4645 -0.5868 1.1257 9 6 8.9462 -0.4665 0.8783 10 1 9.3064 -0.0037 -0.0286 11 6 9.8420 -0.9481 1.8092 12 7 9.4032 -1.5122 2.9134 13 14 11.6786 -0.7996 1.5022 14 1 11.9097 -0.1318 0.1962 15 1 12.2982 0.0042 2.5863 16 1 12.2878 -2.1537 1.4799 17 6 4.6456 0.5533 -1.0724 18 35 5.5944 1.3019 -2.5267 19 6 3.2683 0.5558 -1.0750 20 1 2.7308 -0.9830 1.9075 21 1 5.1871 -0.9812 1.9022 22 1 7.2175 0.3758 -0.7508 23 1 7.2048 -0.0543 2.0407 24 1 7.1973 -1.6385 1.2289 25 1 10.0334 -1.8514 3.5682 26 1 2.7299 0.9855 -1.9069 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225828717.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:22 Heat of formation + Delta-G solvation = 46.470168 kcal Electronic energy + Delta-G solvation = -13160.613551 eV Core-core repulsion = 10671.055113 eV Total energy + Delta-G solvation = -2489.558438 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 279.991 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.44395 -36.61382 -35.12608 -32.89777 -32.13310 -29.91822 -29.05188 -26.85017 -23.65105 -22.59578 -21.33814 -18.49907 -17.63226 -16.09685 -15.77170 -14.69370 -14.28674 -14.13526 -13.65412 -13.40041 -13.36654 -13.27164 -12.53191 -12.20374 -12.19677 -11.97252 -11.08756 -11.01919 -10.90210 -10.64491 -10.33732 -10.11919 -9.76833 -9.55672 -8.74056 -8.70273 -7.03264 -6.35858 -4.42095 1.18335 1.36235 1.83264 2.88739 3.14213 3.15220 3.22703 3.25656 3.95930 4.04179 4.18492 4.27637 4.90386 5.02464 5.12295 5.45690 5.65193 5.91464 6.10587 6.28647 6.46801 6.70267 6.92463 7.14987 7.41293 7.70257 7.72128 7.84004 8.28009 8.65841 9.25238 10.74461 Molecular weight = 279.99amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.005635 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.382279 B = 4967.775405 C = 6263.004657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.276 3.724 3 C -0.127 4.127 4 C -0.002 4.002 5 C -0.199 4.199 6 C 0.287 3.713 7 N -0.698 5.698 8 C 0.240 3.760 9 C -0.544 4.544 10 H 0.065 0.935 11 C 0.067 3.933 12 N -0.886 5.886 13 Si 0.905 3.095 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.281 1.281 17 C -0.197 4.197 18 Br -0.056 7.056 19 C 0.016 3.984 20 H 0.131 0.869 21 H 0.145 0.855 22 H 0.401 0.599 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.267 0.733 26 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.912 3.897 -7.516 10.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.038 4.038 3 C -0.135 4.135 4 C -0.024 4.024 5 C -0.222 4.222 6 C 0.167 3.833 7 N -0.316 5.316 8 C 0.120 3.880 9 C -0.582 4.582 10 H 0.083 0.917 11 C -0.137 4.137 12 N -0.524 5.524 13 Si 0.732 3.268 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.282 4.282 18 Br 0.029 6.971 19 C -0.007 4.007 20 H 0.149 0.851 21 H 0.163 0.837 22 H 0.238 0.762 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.008 3.990 -7.699 11.804 hybrid contribution 1.491 -0.001 -0.008 1.491 sum -6.517 3.990 -7.706 10.853 Atomic orbital electron populations 1.81203 1.12210 1.10957 1.08649 1.25642 0.92475 0.92598 0.93079 1.15488 0.84004 1.14362 0.99622 1.20926 0.93428 0.92665 0.95348 1.20682 0.93493 1.08029 1.00036 1.17972 0.85605 0.88507 0.91170 1.46098 1.01435 1.59374 1.24660 1.19399 0.91198 0.93819 0.83599 1.21167 0.89997 1.41026 1.06049 0.91703 1.24911 0.99766 0.94415 0.94649 1.69934 1.35255 1.38266 1.08898 0.86330 0.83973 0.78039 0.78492 1.19531 1.20662 1.20668 1.20897 0.94093 1.16239 0.96970 1.96607 1.75412 1.83305 1.41778 1.20643 0.91296 0.92858 0.95930 0.85070 0.83736 0.76213 0.95098 0.95092 0.92301 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.05 18.54 41.84 0.78 -6.28 15 2 C 0.28 3.79 15.33 -22.47 -0.34 3.45 15 3 C -0.13 -1.64 5.74 -106.80 -0.61 -2.25 15 4 C 0.00 -0.02 9.75 -39.20 -0.38 -0.40 15 5 C -0.20 -2.97 9.28 -39.45 -0.37 -3.34 15 6 C 0.29 4.68 6.65 -83.78 -0.56 4.12 15 7 N -0.70 -13.07 5.65 -59.77 -0.34 -13.41 15 8 C 0.24 5.40 4.65 -5.20 -0.02 5.38 15 9 C -0.54 -13.60 9.28 -34.44 -0.32 -13.92 15 10 H 0.06 1.58 7.60 -52.49 -0.40 1.18 15 11 C 0.07 1.71 5.46 -17.81 -0.10 1.61 15 12 N -0.89 -23.73 13.29 55.43 0.74 -23.00 15 13 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 15 14 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 17 C -0.20 -2.84 6.23 -39.39 -0.25 -3.09 15 18 Br -0.06 -0.75 32.09 -68.01 -2.18 -2.93 15 19 C 0.02 0.20 9.48 -39.18 -0.37 -0.17 15 20 H 0.13 1.36 8.06 -52.49 -0.42 0.94 15 21 H 0.14 2.25 6.70 -52.49 -0.35 1.90 15 22 H 0.40 7.32 6.69 -40.82 -0.27 7.04 15 23 H 0.03 0.74 7.94 -51.93 -0.41 0.32 15 24 H 0.03 0.74 7.93 -51.93 -0.41 0.33 15 25 H 0.27 6.76 8.31 -40.82 -0.34 6.43 15 26 H 0.13 1.44 8.06 -52.49 -0.42 1.01 15 LS Contribution 263.55 15.07 3.97 3.97 Total: -1.00 -26.01 263.55 -7.21 -33.22 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -1.83 Total: 2.30 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -3.32 Total: -8.62 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 1.17 Total: -42.68 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -2.18 Total: -2.93 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.01 -7.21 -33.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225828717.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.689 kcal (2) G-P(sol) polarization free energy of solvation -26.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds