Wall clock time and date at job start Fri Apr 10 2020 14:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99786 * 2 1 4 4 H 1.48496 * 109.47430 * 270.00371 * 3 2 1 5 5 H 1.48505 * 109.47126 * 30.00946 * 3 2 1 6 6 H 1.48503 * 109.46984 * 150.00645 * 3 2 1 7 7 C 1.37872 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00318 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99993 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47071 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47252 * 179.97438 * 10 9 7 12 12 O 1.20831 * 119.99669 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00289 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99786 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46804 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47250 * 179.97438 * 15 14 13 17 17 H 1.09002 * 115.55911 * 330.69022 * 16 15 14 18 18 C 1.53000 * 117.50223 * 185.00332 * 16 15 14 19 19 C 1.52997 * 117.49889 * 116.37594 * 16 15 14 20 20 Cl 1.80302 * 117.49615 * 0.02562 * 19 16 15 21 21 Cl 1.80298 * 117.52042 * 214.97093 * 19 16 15 22 22 H 0.97002 * 120.00202 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47405 * 59.99601 * 9 7 2 24 24 H 1.08997 * 109.47126 * 299.99305 * 9 7 2 25 25 H 1.09005 * 109.46962 * 60.00011 * 10 9 7 26 26 H 1.09002 * 109.47422 * 299.99656 * 10 9 7 27 27 H 1.09002 * 109.47467 * 59.99902 * 14 13 11 28 28 H 1.09003 * 109.47307 * 299.99601 * 14 13 11 29 29 H 1.08999 * 109.46947 * 60.00388 * 15 14 13 30 30 H 1.08991 * 109.47447 * 299.99933 * 15 14 13 31 31 H 1.08990 * 117.49990 * 145.01974 * 18 16 15 32 32 H 1.09004 * 117.49237 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7003 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0022 12 8 6.1327 -1.5900 -0.0026 13 8 6.1998 -3.7989 -0.0028 14 6 7.6497 -3.7228 -0.0034 15 6 8.2346 -5.1367 -0.0035 16 6 9.7625 -5.0566 -0.0047 17 1 10.1869 -4.1759 -0.4867 18 6 10.5387 -6.3698 -0.1233 19 6 10.5005 -5.6214 1.2107 20 17 9.5031 -6.3309 2.5345 21 17 12.0058 -4.7797 1.7364 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8887 24 1 3.8745 -0.6801 -0.8912 25 1 3.6578 -3.1505 -0.8908 26 1 3.6586 -3.1501 0.8893 27 1 7.9861 -3.1909 0.8866 28 1 7.9853 -3.1905 -0.8934 29 1 7.8983 -5.6689 -0.8933 30 1 7.8991 -5.6687 0.8867 31 1 11.4736 -6.3529 -0.6832 32 1 9.9607 -7.2908 -0.2000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820686844.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:12 Heat of formation + Delta-G solvation = -92.081798 kcal Electronic energy + Delta-G solvation = -16746.041284 eV Core-core repulsion = 13566.009961 eV Total energy + Delta-G solvation = -3180.031323 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 280.042 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.11732 -38.75034 -36.54006 -36.42793 -35.87515 -33.63157 -31.72478 -31.11850 -26.63552 -24.10186 -22.83180 -21.71128 -21.13085 -19.76225 -17.55620 -17.11695 -16.66729 -16.46955 -15.63733 -15.37465 -14.64809 -14.15272 -13.63299 -13.41294 -13.19850 -12.82706 -12.67544 -12.43452 -12.31607 -11.86278 -11.74973 -11.54786 -11.44544 -11.14588 -11.02515 -10.80214 -10.42086 -10.33142 -10.20302 -10.16304 -9.93449 -9.70497 -9.26685 -8.56424 -6.07922 -4.07887 0.75041 1.72463 2.65047 2.67663 2.91672 3.33803 3.40877 3.50066 3.62658 3.84072 4.45658 4.50525 4.55463 4.83032 4.93263 5.03278 5.16871 5.23768 5.26850 5.48690 5.63208 5.78298 5.98649 6.01762 6.47298 6.77139 7.22879 7.30278 7.70011 8.18979 8.46195 8.94409 9.53875 11.04662 Molecular weight = 280.04amu Principal moments of inertia in cm(-1) A = 0.035947 B = 0.002857 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.739890 B = 9797.611592 C =10035.861578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.458 3.542 12 O -0.511 6.511 13 O -0.363 6.363 14 C 0.067 3.933 15 C -0.103 4.103 16 C -0.112 4.112 17 H 0.133 0.867 18 C -0.137 4.137 19 C -0.005 4.005 20 Cl -0.085 7.085 21 Cl -0.095 7.095 22 H 0.264 0.736 23 H 0.026 0.974 24 H 0.021 0.979 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.777 -14.951 0.189 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.133 4.133 11 C 0.302 3.698 12 O -0.398 6.398 13 O -0.281 6.281 14 C -0.007 4.007 15 C -0.140 4.140 16 C -0.131 4.131 17 H 0.151 0.849 18 C -0.174 4.174 19 C -0.056 4.056 20 Cl -0.058 7.058 21 Cl -0.068 7.068 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.141 0.859 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 23.876 -14.510 0.354 27.942 hybrid contribution 0.643 1.033 0.222 1.236 sum 24.519 -13.477 0.576 27.985 Atomic orbital electron populations 1.69903 1.06276 1.27084 1.50625 1.24955 0.94726 0.99208 0.94224 0.86804 0.80592 0.83420 0.78782 1.20162 1.21301 1.18594 1.21030 0.88840 0.94803 1.51828 0.90638 1.19483 0.96915 0.89658 0.97927 1.21547 0.83365 1.03516 1.04873 1.24745 0.92724 0.80891 0.71425 1.90624 1.70695 1.33100 1.45397 1.86529 1.20618 1.36237 1.84715 1.22838 0.78194 0.96996 1.02706 1.21313 0.90049 0.97183 1.05442 1.23151 0.95379 0.99375 0.95242 0.84889 1.24019 1.03386 0.97201 0.92803 1.26910 0.89407 1.04258 0.85036 1.98758 1.69932 1.84238 1.52825 1.98760 1.36571 1.79257 1.92165 0.92589 0.95603 0.96054 0.88306 0.88271 0.91240 0.91244 0.88902 0.89004 0.85893 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.00 -0.06 3.33 -27.88 -0.09 -0.15 16 10 C -0.10 -1.84 5.75 -27.88 -0.16 -2.00 16 11 C 0.46 8.43 7.96 36.01 0.29 8.72 16 12 O -0.51 -10.82 15.73 -18.75 -0.30 -11.12 16 13 O -0.36 -5.50 10.22 -39.26 -0.40 -5.91 16 14 C 0.07 0.79 5.42 37.16 0.20 1.00 16 15 C -0.10 -0.86 5.79 -26.73 -0.15 -1.01 16 16 C -0.11 -0.75 5.58 -90.62 -0.51 -1.26 16 17 H 0.13 0.80 8.07 -51.93 -0.42 0.38 16 18 C -0.14 -0.68 9.93 -26.73 -0.27 -0.95 16 19 C 0.00 -0.04 3.62 -26.73 -0.10 -0.13 16 20 Cl -0.08 -0.77 27.27 -51.86 -1.41 -2.18 16 21 Cl -0.09 -0.80 29.29 -51.86 -1.52 -2.32 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 24 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 25 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 26 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 27 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.83 6.06 -51.93 -0.31 0.51 16 31 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 309.29 15.07 4.66 4.66 Total: -1.00 -32.20 309.29 -8.12 -40.32 By element: Atomic # 1 Polarization: -1.09 SS G_CDS: -4.04 Total: -5.14 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.22 Total: -8.99 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.77 Total: -26.80 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.70 Total: -17.02 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -2.93 Total: -4.50 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.20 -8.12 -40.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820686844.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.763 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds