Wall clock time and date at job start Fri Apr 10 2020 14:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99786 * 2 1 4 4 H 1.48496 * 109.47430 * 270.00371 * 3 2 1 5 5 H 1.48505 * 109.47126 * 30.00946 * 3 2 1 6 6 H 1.48503 * 109.46984 * 150.00645 * 3 2 1 7 7 C 1.37872 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00318 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99993 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47071 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47252 * 179.97438 * 10 9 7 12 12 O 1.20831 * 119.99669 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00289 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99786 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46804 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47250 * 179.97438 * 15 14 13 17 17 H 1.09002 * 115.55911 * 330.69022 * 16 15 14 18 18 C 1.53000 * 117.50223 * 185.00332 * 16 15 14 19 19 C 1.52997 * 117.49889 * 116.37594 * 16 15 14 20 20 Cl 1.80302 * 117.49615 * 0.02562 * 19 16 15 21 21 Cl 1.80298 * 117.52042 * 214.97093 * 19 16 15 22 22 H 0.97002 * 120.00202 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47405 * 59.99601 * 9 7 2 24 24 H 1.08997 * 109.47126 * 299.99305 * 9 7 2 25 25 H 1.09005 * 109.46962 * 60.00011 * 10 9 7 26 26 H 1.09002 * 109.47422 * 299.99656 * 10 9 7 27 27 H 1.09002 * 109.47467 * 59.99902 * 14 13 11 28 28 H 1.09003 * 109.47307 * 299.99601 * 14 13 11 29 29 H 1.08999 * 109.46947 * 60.00388 * 15 14 13 30 30 H 1.08991 * 109.47447 * 299.99933 * 15 14 13 31 31 H 1.08990 * 117.49990 * 145.01974 * 18 16 15 32 32 H 1.09004 * 117.49237 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7003 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0022 12 8 6.1327 -1.5900 -0.0026 13 8 6.1998 -3.7989 -0.0028 14 6 7.6497 -3.7228 -0.0034 15 6 8.2346 -5.1367 -0.0035 16 6 9.7625 -5.0566 -0.0047 17 1 10.1869 -4.1759 -0.4867 18 6 10.5387 -6.3698 -0.1233 19 6 10.5005 -5.6214 1.2107 20 17 9.5031 -6.3309 2.5345 21 17 12.0058 -4.7797 1.7364 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8887 24 1 3.8745 -0.6801 -0.8912 25 1 3.6578 -3.1505 -0.8908 26 1 3.6586 -3.1501 0.8893 27 1 7.9861 -3.1909 0.8866 28 1 7.9853 -3.1905 -0.8934 29 1 7.8983 -5.6689 -0.8933 30 1 7.8991 -5.6687 0.8867 31 1 11.4736 -6.3529 -0.6832 32 1 9.9607 -7.2908 -0.2000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820686844.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:11 Heat of formation + Delta-G solvation = -109.700308 kcal Electronic energy + Delta-G solvation = -16746.805280 eV Core-core repulsion = 13566.009961 eV Total energy + Delta-G solvation = -3180.795319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 280.042 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.48835 -39.35590 -37.73886 -37.05561 -36.58759 -35.62724 -33.48692 -32.19385 -28.45961 -25.19098 -23.38800 -23.28742 -21.83822 -21.24342 -19.33626 -18.35287 -17.89274 -17.55492 -16.82967 -16.28832 -16.21989 -15.70138 -14.83585 -14.71257 -14.43811 -13.97879 -13.85411 -13.44818 -13.25730 -13.03552 -12.92059 -12.65420 -12.45568 -12.23464 -12.20009 -12.02044 -11.90497 -11.79857 -11.51312 -11.45195 -11.41256 -11.24945 -10.78649 -10.75563 -8.31696 -6.35873 0.18698 1.13512 1.22056 1.34541 1.36882 1.50423 1.68690 2.18950 2.34752 3.03798 3.07372 3.29527 3.78479 3.88316 3.98668 4.09754 4.32147 4.37822 4.40500 4.44555 4.66532 4.75270 4.85203 4.91552 5.09136 5.27308 5.37074 5.41438 5.59614 6.21642 6.69518 6.81226 7.29415 8.83880 Molecular weight = 280.04amu Principal moments of inertia in cm(-1) A = 0.035947 B = 0.002857 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.739890 B = 9797.611592 C =10035.861578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.001 3.999 10 C -0.092 4.092 11 C 0.469 3.531 12 O -0.542 6.542 13 O -0.356 6.356 14 C 0.060 3.940 15 C -0.094 4.094 16 C -0.113 4.113 17 H 0.141 0.859 18 C -0.110 4.110 19 C -0.021 4.021 20 Cl -0.104 7.104 21 Cl -0.107 7.107 22 H 0.268 0.732 23 H 0.016 0.984 24 H 0.017 0.983 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.592 -15.624 -0.585 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.569 4.569 8 H 0.070 0.930 9 C -0.036 4.036 10 C -0.130 4.130 11 C 0.314 3.686 12 O -0.432 6.432 13 O -0.273 6.273 14 C -0.013 4.013 15 C -0.131 4.131 16 C -0.132 4.132 17 H 0.159 0.841 18 C -0.147 4.147 19 C -0.072 4.072 20 Cl -0.076 7.076 21 Cl -0.080 7.080 22 H 0.077 0.923 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.104 0.896 31 H 0.161 0.839 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 25.706 -15.216 -0.422 29.875 hybrid contribution 0.092 1.138 0.455 1.229 sum 25.798 -14.078 0.033 29.389 Atomic orbital electron populations 1.70021 1.07866 1.28207 1.52204 1.25807 0.95504 1.02925 0.94149 0.85820 0.79283 0.79320 0.79259 1.19153 1.20494 1.18289 1.21349 0.90936 0.93907 1.50743 0.93002 1.19325 0.94344 0.92892 0.97077 1.21341 0.84595 1.00559 1.06467 1.24316 0.92333 0.81173 0.70753 1.90616 1.71237 1.34317 1.47072 1.86491 1.22673 1.34240 1.83880 1.23185 0.75979 0.99511 1.02671 1.21271 0.91016 0.94763 1.06017 1.23146 0.94257 1.00995 0.94844 0.84094 1.24207 1.03756 0.96660 0.90104 1.27184 0.89181 1.05787 0.85062 1.98755 1.70453 1.84464 1.53977 1.98758 1.37226 1.79649 1.92375 0.92294 0.96596 0.96485 0.86610 0.86937 0.92126 0.90550 0.87210 0.89573 0.83912 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.35 13.96 21.45 0.30 -58.05 16 2 C 0.01 0.82 5.47 84.65 0.46 1.29 16 3 Si 0.94 45.52 27.47 68.60 1.88 47.40 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.26 -12.33 6.54 99.48 0.65 -11.68 16 7 C -0.53 -30.04 9.66 25.60 0.25 -29.80 16 8 H 0.05 3.10 7.99 -2.91 -0.02 3.07 16 9 C 0.00 0.06 3.33 29.85 0.10 0.16 16 10 C -0.09 -3.45 5.75 29.85 0.17 -3.28 16 11 C 0.47 16.58 7.96 71.24 0.57 17.15 16 12 O -0.54 -22.40 15.73 21.95 0.35 -22.05 16 13 O -0.36 -10.11 10.22 -51.44 -0.53 -10.64 16 14 C 0.06 1.32 5.42 71.98 0.39 1.71 16 15 C -0.09 -1.33 5.79 30.60 0.18 -1.16 16 16 C -0.11 -1.23 5.58 -10.79 -0.06 -1.29 16 17 H 0.14 1.33 8.07 -2.39 -0.02 1.31 16 18 C -0.11 -0.75 9.93 30.60 0.30 -0.44 16 19 C -0.02 -0.28 3.62 30.60 0.11 -0.17 16 20 Cl -0.10 -1.75 27.27 -2.72 -0.07 -1.83 16 21 Cl -0.11 -1.67 29.29 -2.72 -0.08 -1.75 16 22 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 23 H 0.02 0.78 7.16 -2.39 -0.02 0.77 16 24 H 0.02 0.82 7.53 -2.39 -0.02 0.80 16 25 H 0.12 3.93 8.14 -2.38 -0.02 3.91 16 26 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 27 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 28 H 0.08 1.59 8.13 -2.39 -0.02 1.57 16 29 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.38 6.06 -2.39 -0.01 1.36 16 31 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.14 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -68.88 309.29 5.39 -63.50 By element: Atomic # 1 Polarization: -1.81 SS G_CDS: 1.07 Total: -0.75 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 2.47 Total: -15.83 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.30 Total: -58.05 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.18 Total: -32.69 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Atomic # 17 Polarization: -3.43 SS G_CDS: -0.15 Total: -3.58 kcal Total: -68.88 5.39 -63.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820686844.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.204 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds