Wall clock time and date at job start Fri Apr 10 2020 14:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99917 * 2 1 4 4 H 1.48491 * 109.47398 * 270.00106 * 3 2 1 5 5 H 1.48498 * 109.47135 * 30.00749 * 3 2 1 6 6 H 1.48507 * 109.46781 * 149.99902 * 3 2 1 7 7 C 1.37874 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00394 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99867 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46787 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46787 * 179.97438 * 10 9 7 12 12 O 1.20823 * 120.00004 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99911 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99646 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46917 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47233 * 179.97438 * 15 14 13 17 17 H 1.08999 * 115.54778 * 29.33307 * 16 15 14 18 18 C 1.53000 * 117.49792 * 174.99945 * 16 15 14 19 19 C 1.53002 * 60.02940 * 107.48056 * 18 16 15 20 20 Cl 1.80300 * 117.49870 * 107.50516 * 19 18 16 21 21 Cl 1.80308 * 117.49539 * 252.51959 * 19 18 16 22 22 H 0.97004 * 119.99995 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46490 * 59.99886 * 9 7 2 24 24 H 1.09000 * 109.46682 * 300.00467 * 9 7 2 25 25 H 1.09000 * 109.47739 * 60.00601 * 10 9 7 26 26 H 1.08992 * 109.47531 * 299.99569 * 10 9 7 27 27 H 1.08995 * 109.47471 * 60.00063 * 14 13 11 28 28 H 1.09002 * 109.47104 * 299.99552 * 14 13 11 29 29 H 1.09011 * 109.47228 * 59.99581 * 15 14 13 30 30 H 1.09003 * 109.47609 * 299.99948 * 15 14 13 31 31 H 1.09002 * 117.49833 * 214.98161 * 18 16 15 32 32 H 1.09002 * 117.49953 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 6 5.5285 -2.6366 -0.0035 12 8 6.1326 -1.5903 -0.0030 13 8 6.1996 -3.7991 -0.0052 14 6 7.6497 -3.7231 -0.0057 15 6 8.2344 -5.1369 -0.0070 16 6 9.7624 -5.0568 -0.0082 17 1 10.1873 -4.1764 0.4738 18 6 10.5386 -6.3701 0.1087 19 6 10.4987 -5.6220 -1.2253 20 17 12.0033 -4.7806 -1.7534 21 17 9.4989 -6.3311 -2.5477 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6804 0.8889 24 1 3.8745 -0.6800 -0.8911 25 1 3.6579 -3.1499 -0.8925 26 1 3.6585 -3.1510 0.8874 27 1 7.9860 -3.1920 0.8847 28 1 7.9852 -3.1899 -0.8952 29 1 7.8980 -5.6684 -0.8973 30 1 7.8989 -5.6698 0.8827 31 1 11.4746 -6.3535 0.6672 32 1 9.9608 -7.2911 0.1869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820686845.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:13 Heat of formation + Delta-G solvation = -92.063821 kcal Electronic energy + Delta-G solvation = -16745.613773 eV Core-core repulsion = 13565.583230 eV Total energy + Delta-G solvation = -3180.030543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 280.042 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.11785 -38.74582 -36.54025 -36.42801 -35.87445 -33.63138 -31.72445 -31.11811 -26.63509 -24.10172 -22.82977 -21.71095 -21.13090 -19.76221 -17.55611 -17.11615 -16.66525 -16.47055 -15.63936 -15.37198 -14.64948 -14.15099 -13.63052 -13.41875 -13.19899 -12.82761 -12.66974 -12.43480 -12.31420 -11.87093 -11.74864 -11.54375 -11.44462 -11.14763 -11.02423 -10.80243 -10.41970 -10.33008 -10.21254 -10.15380 -9.93600 -9.70491 -9.26671 -8.56376 -6.07936 -4.07876 0.74968 1.72494 2.64995 2.67706 2.91632 3.33985 3.40920 3.49850 3.62563 3.84134 4.45654 4.50513 4.55484 4.83081 4.93286 5.03255 5.16857 5.23779 5.26845 5.48681 5.63200 5.78272 5.98657 6.01818 6.47309 6.77160 7.22994 7.30124 7.69989 8.18997 8.46177 8.94385 9.53864 11.04648 Molecular weight = 280.04amu Principal moments of inertia in cm(-1) A = 0.035941 B = 0.002857 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.876255 B = 9798.331954 C =10036.354399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.458 3.542 12 O -0.511 6.511 13 O -0.363 6.363 14 C 0.067 3.933 15 C -0.103 4.103 16 C -0.112 4.112 17 H 0.133 0.867 18 C -0.136 4.136 19 C -0.005 4.005 20 Cl -0.095 7.095 21 Cl -0.085 7.085 22 H 0.264 0.736 23 H 0.026 0.974 24 H 0.021 0.979 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.778 -14.951 -0.160 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.133 4.133 11 C 0.302 3.698 12 O -0.398 6.398 13 O -0.281 6.281 14 C -0.007 4.007 15 C -0.140 4.140 16 C -0.131 4.131 17 H 0.151 0.849 18 C -0.174 4.174 19 C -0.056 4.056 20 Cl -0.068 7.068 21 Cl -0.058 7.058 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.141 0.859 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 23.877 -14.510 -0.318 27.942 hybrid contribution 0.642 1.032 -0.277 1.247 sum 24.519 -13.478 -0.595 27.986 Atomic orbital electron populations 1.69906 1.06276 1.27082 1.50626 1.24957 0.94726 0.99209 0.94224 0.86801 0.80567 0.83412 0.78806 1.20150 1.21310 1.18603 1.21033 0.88839 0.94801 1.51829 0.90638 1.19484 0.96918 0.89658 0.97925 1.21545 0.83366 1.03513 1.04872 1.24743 0.92725 0.80890 0.71427 1.90622 1.70688 1.33107 1.45394 1.86530 1.20620 1.36237 1.84716 1.22836 0.78193 0.96997 1.02705 1.21316 0.90052 0.97182 1.05443 1.23160 0.95390 0.99374 0.95220 0.84888 1.24018 1.03391 0.97208 0.92790 1.26922 0.89397 1.04266 0.85027 1.98760 1.36621 1.79266 1.92103 1.98758 1.69810 1.84257 1.52925 0.92590 0.95604 0.96053 0.88307 0.88273 0.91252 0.91233 0.89010 0.88896 0.85897 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.53 -14.83 9.66 -34.44 -0.33 -15.17 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.00 -0.06 3.33 -27.88 -0.09 -0.15 16 10 C -0.10 -1.84 5.75 -27.88 -0.16 -2.00 16 11 C 0.46 8.43 7.96 36.01 0.29 8.72 16 12 O -0.51 -10.82 15.73 -18.75 -0.29 -11.12 16 13 O -0.36 -5.51 10.22 -39.26 -0.40 -5.91 16 14 C 0.07 0.79 5.42 37.16 0.20 1.00 16 15 C -0.10 -0.86 5.79 -26.73 -0.15 -1.01 16 16 C -0.11 -0.75 5.58 -90.58 -0.51 -1.26 16 17 H 0.13 0.80 8.07 -51.93 -0.42 0.38 16 18 C -0.14 -0.68 9.93 -26.73 -0.27 -0.95 16 19 C 0.00 -0.04 3.62 -26.69 -0.10 -0.13 16 20 Cl -0.09 -0.80 29.29 -51.86 -1.52 -2.32 16 21 Cl -0.08 -0.76 27.27 -51.86 -1.41 -2.18 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.03 0.65 7.16 -51.93 -0.37 0.27 16 24 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 25 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 26 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 28 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.09 0.83 6.06 -51.92 -0.31 0.51 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -32.20 309.30 -8.12 -40.32 By element: Atomic # 1 Polarization: -1.09 SS G_CDS: -4.04 Total: -5.14 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.22 Total: -8.99 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.77 Total: -26.80 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.70 Total: -17.02 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -2.93 Total: -4.50 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.20 -8.12 -40.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820686845.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.746 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds