Wall clock time and date at job start Fri Apr 10 2020 14:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99917 * 2 1 4 4 H 1.48491 * 109.47398 * 270.00106 * 3 2 1 5 5 H 1.48498 * 109.47135 * 30.00749 * 3 2 1 6 6 H 1.48507 * 109.46781 * 149.99902 * 3 2 1 7 7 C 1.37874 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00394 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99867 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46787 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46787 * 179.97438 * 10 9 7 12 12 O 1.20823 * 120.00004 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99911 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99646 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46917 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47233 * 179.97438 * 15 14 13 17 17 H 1.08999 * 115.54778 * 29.33307 * 16 15 14 18 18 C 1.53000 * 117.49792 * 174.99945 * 16 15 14 19 19 C 1.53002 * 60.02940 * 107.48056 * 18 16 15 20 20 Cl 1.80300 * 117.49870 * 107.50516 * 19 18 16 21 21 Cl 1.80308 * 117.49539 * 252.51959 * 19 18 16 22 22 H 0.97004 * 119.99995 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46490 * 59.99886 * 9 7 2 24 24 H 1.09000 * 109.46682 * 300.00467 * 9 7 2 25 25 H 1.09000 * 109.47739 * 60.00601 * 10 9 7 26 26 H 1.08992 * 109.47531 * 299.99569 * 10 9 7 27 27 H 1.08995 * 109.47471 * 60.00063 * 14 13 11 28 28 H 1.09002 * 109.47104 * 299.99552 * 14 13 11 29 29 H 1.09011 * 109.47228 * 59.99581 * 15 14 13 30 30 H 1.09003 * 109.47609 * 299.99948 * 15 14 13 31 31 H 1.09002 * 117.49833 * 214.98161 * 18 16 15 32 32 H 1.09002 * 117.49953 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 6 5.5285 -2.6366 -0.0035 12 8 6.1326 -1.5903 -0.0030 13 8 6.1996 -3.7991 -0.0052 14 6 7.6497 -3.7231 -0.0057 15 6 8.2344 -5.1369 -0.0070 16 6 9.7624 -5.0568 -0.0082 17 1 10.1873 -4.1764 0.4738 18 6 10.5386 -6.3701 0.1087 19 6 10.4987 -5.6220 -1.2253 20 17 12.0033 -4.7806 -1.7534 21 17 9.4989 -6.3311 -2.5477 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6804 0.8889 24 1 3.8745 -0.6800 -0.8911 25 1 3.6579 -3.1499 -0.8925 26 1 3.6585 -3.1510 0.8874 27 1 7.9860 -3.1920 0.8847 28 1 7.9852 -3.1899 -0.8952 29 1 7.8980 -5.6684 -0.8973 30 1 7.8989 -5.6698 0.8827 31 1 11.4746 -6.3535 0.6672 32 1 9.9608 -7.2911 0.1869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820686845.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:13 Heat of formation + Delta-G solvation = -109.678957 kcal Electronic energy + Delta-G solvation = -16746.377623 eV Core-core repulsion = 13565.583230 eV Total energy + Delta-G solvation = -3180.794393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 280.042 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.48897 -39.35126 -37.73867 -37.05533 -36.58663 -35.62686 -33.48658 -32.19326 -28.45917 -25.19062 -23.38759 -23.28533 -21.83827 -21.24321 -19.33606 -18.35287 -17.89100 -17.55549 -16.82759 -16.30216 -16.20530 -15.70218 -14.82099 -14.73112 -14.43974 -13.96966 -13.85097 -13.45974 -13.24933 -13.03744 -12.92539 -12.65217 -12.45356 -12.23437 -12.19997 -12.01983 -11.90339 -11.79822 -11.51289 -11.45852 -11.40437 -11.25067 -10.78710 -10.75417 -8.31704 -6.35862 0.18646 1.13573 1.22133 1.34778 1.36794 1.50303 1.68715 2.18839 2.34746 3.03806 3.07267 3.29617 3.78489 3.88291 3.98768 4.09766 4.32191 4.37822 4.40590 4.44532 4.66550 4.75227 4.85162 4.91602 5.09117 5.27312 5.37083 5.41462 5.59597 6.21618 6.69503 6.81252 7.29399 8.83872 Molecular weight = 280.04amu Principal moments of inertia in cm(-1) A = 0.035941 B = 0.002857 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.876255 B = 9798.331954 C =10036.354399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.001 3.999 10 C -0.092 4.092 11 C 0.469 3.531 12 O -0.542 6.542 13 O -0.356 6.356 14 C 0.060 3.940 15 C -0.094 4.094 16 C -0.113 4.113 17 H 0.141 0.859 18 C -0.110 4.110 19 C -0.021 4.021 20 Cl -0.107 7.107 21 Cl -0.103 7.103 22 H 0.268 0.732 23 H 0.018 0.982 24 H 0.014 0.986 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.143 0.857 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.600 -15.626 0.543 29.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.569 4.569 8 H 0.070 0.930 9 C -0.036 4.036 10 C -0.130 4.130 11 C 0.314 3.686 12 O -0.432 6.432 13 O -0.273 6.273 14 C -0.013 4.013 15 C -0.131 4.131 16 C -0.132 4.132 17 H 0.159 0.841 18 C -0.147 4.147 19 C -0.072 4.072 20 Cl -0.080 7.080 21 Cl -0.076 7.076 22 H 0.077 0.923 23 H 0.036 0.964 24 H 0.033 0.967 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.161 0.839 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 25.713 -15.218 0.384 29.882 hybrid contribution 0.089 1.138 -0.485 1.240 sum 25.802 -14.080 -0.102 29.394 Atomic orbital electron populations 1.70024 1.07866 1.28204 1.52208 1.25809 0.95506 1.02929 0.94151 0.85818 0.79349 0.79323 0.79185 1.19377 1.20423 1.18134 1.21352 0.90938 0.93904 1.50737 0.93006 1.19327 0.94343 0.92893 0.97080 1.21339 0.84597 1.00557 1.06465 1.24314 0.92333 0.81173 0.70755 1.90614 1.71231 1.34322 1.47068 1.86492 1.22676 1.34241 1.83881 1.23184 0.75977 0.99511 1.02672 1.21274 0.91019 0.94764 1.06017 1.23155 0.94269 1.00993 0.94820 0.84095 1.24205 1.03768 0.96667 0.90092 1.27196 0.89169 1.05793 0.85053 1.98758 1.37274 1.79657 1.92314 1.98755 1.70332 1.84483 1.54074 0.92297 0.96359 0.96711 0.86927 0.86626 0.90577 0.92096 0.89573 0.87211 0.83916 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.36 13.96 21.45 0.30 -58.06 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.94 45.52 27.47 68.60 1.88 47.40 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.26 -12.19 6.54 99.48 0.65 -11.54 16 7 C -0.53 -30.04 9.66 25.60 0.25 -29.79 16 8 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 9 C 0.00 0.06 3.33 29.85 0.10 0.16 16 10 C -0.09 -3.45 5.75 29.85 0.17 -3.27 16 11 C 0.47 16.57 7.96 71.24 0.57 17.14 16 12 O -0.54 -22.39 15.73 21.97 0.35 -22.04 16 13 O -0.36 -10.11 10.22 -51.41 -0.53 -10.64 16 14 C 0.06 1.32 5.42 71.98 0.39 1.71 16 15 C -0.09 -1.34 5.79 30.59 0.18 -1.16 16 16 C -0.11 -1.23 5.58 -10.77 -0.06 -1.29 16 17 H 0.14 1.33 8.07 -2.39 -0.02 1.31 16 18 C -0.11 -0.75 9.93 30.60 0.30 -0.44 16 19 C -0.02 -0.28 3.62 30.62 0.11 -0.16 16 20 Cl -0.11 -1.67 29.29 -2.72 -0.08 -1.75 16 21 Cl -0.10 -1.75 27.27 -2.72 -0.07 -1.82 16 22 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 23 H 0.02 0.89 7.16 -2.39 -0.02 0.88 16 24 H 0.01 0.72 7.53 -2.39 -0.02 0.70 16 25 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 26 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 27 H 0.08 1.58 8.13 -2.39 -0.02 1.57 16 28 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 29 H 0.09 1.38 6.06 -2.38 -0.01 1.36 16 30 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -68.87 309.30 5.39 -63.48 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: 1.07 Total: -0.73 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 2.47 Total: -15.84 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.30 Total: -58.06 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.18 Total: -32.68 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.15 Total: -3.58 kcal Total: -68.87 5.39 -63.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820686845.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.198 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds