Wall clock time and date at job start Fri Apr 10 2020 14:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 115.54996 * 2 1 4 4 C 1.50709 * 109.47131 * 80.27355 * 3 2 1 5 5 O 1.20822 * 119.99827 * 355.92071 * 4 3 2 6 6 O 1.34229 * 119.99903 * 175.92758 * 4 3 2 7 7 C 1.45198 * 116.99817 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47185 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.47334 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99727 * 0.02562 * 9 8 7 11 11 C 1.37869 * 120.00283 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00059 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99959 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47004 * 89.99794 * 13 11 9 15 15 H 1.48498 * 109.47226 * 209.99836 * 13 11 9 16 16 H 1.48496 * 109.47141 * 329.99896 * 13 11 9 17 17 C 1.53002 * 117.49987 * 145.67026 * 2 1 3 18 18 C 1.53004 * 117.51986 * 214.30128 * 2 1 3 19 19 Cl 1.80297 * 117.49617 * 0.02562 * 18 2 1 20 20 Cl 1.80298 * 117.50133 * 145.02696 * 18 2 1 21 21 H 1.08995 * 109.47771 * 65.81920 * 1 2 3 22 22 H 1.09001 * 109.46974 * 185.82943 * 1 2 3 23 23 H 1.09008 * 109.47183 * 305.82359 * 1 2 3 24 24 H 1.08998 * 109.47250 * 320.26908 * 3 2 1 25 25 H 1.09004 * 109.47260 * 200.26475 * 3 2 1 26 26 H 1.09004 * 109.47211 * 299.99759 * 7 6 4 27 27 H 1.09005 * 109.47051 * 59.99606 * 7 6 4 28 28 H 1.09004 * 109.47044 * 300.00099 * 8 7 6 29 29 H 1.09005 * 109.47253 * 59.99968 * 8 7 6 30 30 H 0.97009 * 119.99623 * 180.02562 * 12 11 9 31 31 H 1.09003 * 117.50172 * 214.99617 * 17 2 1 32 32 H 1.09000 * 117.50049 * 0.02838 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.1899 1.9371 1.4005 5 8 1.6463 1.3295 2.2921 6 8 2.7938 3.1081 1.6571 7 6 2.7539 3.5837 3.0284 8 6 3.4889 4.9220 3.1256 9 6 3.4481 5.4154 4.5490 10 1 2.9482 4.8324 5.3085 11 6 4.0497 6.6104 4.8820 12 7 4.0136 7.0411 6.1241 13 14 4.9149 7.6184 3.5686 14 1 3.9482 8.5623 2.9523 15 1 6.0288 8.3829 4.1851 16 1 5.4554 6.7113 2.5245 17 6 2.2364 -1.1207 0.7654 18 6 2.2369 -1.1209 -0.7647 19 17 1.2032 -2.3408 -1.5977 20 17 3.7838 -0.7141 -1.5968 21 1 -0.3634 0.4209 -0.9374 22 1 -0.3633 -1.0224 0.1044 23 1 -0.3634 0.6015 0.8333 24 1 1.6335 2.0490 -0.6568 25 1 3.2163 1.2924 -0.3560 26 1 1.7168 3.7151 3.3374 27 1 3.2376 2.8557 3.6797 28 1 4.5259 4.7903 2.8168 29 1 3.0055 5.6503 2.4743 30 1 4.4366 7.8821 6.3583 31 1 3.1714 -0.8747 1.2688 32 1 1.6112 -1.8584 1.2685 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835268535.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:14 Heat of formation + Delta-G solvation = -87.021144 kcal Electronic energy + Delta-G solvation = -17277.792103 eV Core-core repulsion = 14097.980227 eV Total energy + Delta-G solvation = -3179.811876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 280.042 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.43430 -38.71553 -36.44801 -36.36894 -35.78757 -33.35431 -31.04793 -30.00500 -28.54378 -25.21153 -22.75425 -21.58783 -20.65515 -19.35848 -17.61076 -16.83918 -16.63735 -16.28887 -15.63148 -15.38512 -14.25286 -14.06742 -13.74904 -13.47909 -13.05881 -12.96200 -12.53065 -12.40384 -12.27062 -11.95158 -11.82612 -11.51873 -11.50195 -11.32024 -11.02418 -10.73289 -10.60812 -10.43760 -10.18072 -9.98563 -9.84860 -9.74939 -9.38245 -8.65375 -6.15929 -4.17450 0.81477 1.83189 2.40888 2.59085 3.23605 3.25736 3.33427 3.37409 3.81367 3.95446 4.30474 4.35885 4.56238 5.09931 5.17676 5.21173 5.25076 5.30567 5.42297 5.51440 5.59633 5.90263 5.91729 5.92529 6.40341 6.73399 7.14273 7.17914 7.58944 8.04485 8.36224 8.85442 9.43596 10.96590 Molecular weight = 280.04amu Principal moments of inertia in cm(-1) A = 0.037261 B = 0.003347 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.269918 B = 8363.683510 C = 8785.026542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.073 4.073 3 C -0.094 4.094 4 C 0.460 3.540 5 O -0.507 6.507 6 O -0.361 6.361 7 C 0.083 3.917 8 C -0.010 4.010 9 C -0.529 4.529 10 H 0.075 0.925 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.881 3.119 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.263 1.263 17 C -0.121 4.121 18 C 0.002 3.998 19 Cl -0.093 7.093 20 Cl -0.092 7.092 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.266 0.734 31 H 0.120 0.880 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 -16.995 -16.941 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.074 4.074 3 C -0.131 4.131 4 C 0.302 3.698 5 O -0.396 6.396 6 O -0.277 6.277 7 C 0.011 3.989 8 C -0.047 4.047 9 C -0.566 4.566 10 H 0.093 0.907 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.708 3.292 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.188 1.188 17 C -0.158 4.158 18 C -0.049 4.049 19 Cl -0.066 7.066 20 Cl -0.065 7.065 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.136 0.864 25 H 0.132 0.868 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.139 0.861 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.735 -17.060 -16.650 24.304 hybrid contribution 0.551 0.500 -0.607 0.960 sum -4.185 -16.560 -17.257 24.281 Atomic orbital electron populations 1.21479 0.89314 1.03631 1.03370 1.22007 0.96920 0.89852 0.98627 1.21026 1.04659 0.94106 0.93358 1.23139 0.75738 0.79932 0.90995 1.90651 1.41964 1.59425 1.47518 1.86484 1.69436 1.35913 1.35874 1.23398 1.01776 0.97612 0.76119 1.19631 0.96062 0.90480 0.98548 1.20835 1.36994 1.06614 0.92188 0.90655 1.24937 0.95472 0.97156 0.95428 1.69897 1.44320 1.21674 1.17570 0.86751 0.79747 0.80514 0.82201 1.20031 1.21147 1.18754 1.24033 1.03867 0.99873 0.88038 1.27235 0.87338 0.98045 0.92327 1.98740 1.68171 1.58392 1.81272 1.98749 1.33281 1.93209 1.81271 0.91150 0.91202 0.89976 0.86354 0.86786 0.91645 0.91646 0.95383 0.95799 0.92400 0.86142 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.07 37.15 0.34 -0.72 16 2 C -0.07 -0.70 1.59 -154.51 -0.25 -0.94 16 3 C -0.09 -0.99 5.60 -27.88 -0.16 -1.15 16 4 C 0.46 6.89 7.82 36.01 0.28 7.17 16 5 O -0.51 -8.57 14.72 -18.75 -0.28 -8.85 16 6 O -0.36 -6.43 10.22 -39.26 -0.40 -6.83 16 7 C 0.08 1.71 5.40 37.16 0.20 1.92 16 8 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 9 C -0.53 -14.80 9.66 -34.44 -0.33 -15.14 16 10 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 11 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 12 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 13 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 17 C -0.12 -1.13 8.81 -26.73 -0.24 -1.36 16 18 C 0.00 0.02 3.61 -26.73 -0.10 -0.08 16 19 Cl -0.09 -0.83 27.82 -51.86 -1.44 -2.27 16 20 Cl -0.09 -0.89 27.33 -51.86 -1.42 -2.31 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.07 0.56 7.28 -51.93 -0.38 0.18 16 23 H 0.08 0.82 7.65 -51.92 -0.40 0.42 16 24 H 0.12 1.03 8.13 -51.93 -0.42 0.61 16 25 H 0.11 1.14 6.24 -51.93 -0.32 0.82 16 26 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 27 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 28 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 29 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 304.78 15.07 4.59 4.59 Total: -1.00 -30.26 304.78 -7.29 -37.56 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -3.99 Total: -3.37 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.47 Total: -8.68 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.33 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.68 Total: -15.68 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -2.86 Total: -4.59 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.26 -7.29 -37.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835268535.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.463 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds