Wall clock time and date at job start Fri Apr 10 2020 14:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 115.54662 * 2 1 4 4 O 1.45198 * 109.46985 * 325.66342 * 3 2 1 5 5 C 1.34230 * 116.99783 * 180.02562 * 4 3 2 6 6 O 1.20822 * 120.00010 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00138 * 180.02562 * 5 4 3 8 8 C 1.53002 * 109.47303 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.46931 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46845 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47399 * 299.99813 * 13 11 9 16 16 H 1.48498 * 109.47295 * 60.00420 * 13 11 9 17 17 C 1.53001 * 117.51789 * 214.29653 * 2 1 3 18 18 C 1.53002 * 117.49890 * 145.66670 * 2 1 3 19 19 Cl 1.80295 * 117.49767 * 215.00501 * 18 2 1 20 20 Cl 1.80297 * 117.49715 * 0.02597 * 18 2 1 21 21 H 1.08996 * 109.47079 * 34.41947 * 1 2 3 22 22 H 1.09001 * 109.46736 * 154.41922 * 1 2 3 23 23 H 1.08998 * 109.47395 * 274.41679 * 1 2 3 24 24 H 1.09006 * 109.46544 * 205.67080 * 3 2 1 25 25 H 1.08997 * 109.47145 * 85.67239 * 3 2 1 26 26 H 1.09004 * 109.47476 * 60.00003 * 7 5 4 27 27 H 1.09004 * 109.47043 * 300.00077 * 7 5 4 28 28 H 1.09000 * 109.46986 * 60.00149 * 8 7 5 29 29 H 1.08992 * 109.46974 * 300.00213 * 8 7 5 30 30 H 0.97000 * 119.99706 * 359.97438 * 12 11 9 31 31 H 1.09001 * 117.49615 * 0.02562 * 17 2 1 32 32 H 1.08998 * 117.49363 * 145.02944 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3787 2.3045 -0.7722 5 6 1.8218 3.5677 -0.8718 6 8 2.8536 3.8903 -0.3321 7 6 1.0325 4.5834 -1.6568 8 6 1.7512 5.9334 -1.6117 9 6 0.9621 6.9490 -2.3973 10 1 0.0400 6.6605 -2.8801 11 6 1.4174 8.2464 -2.4997 12 7 2.5404 8.5975 -1.9123 13 14 0.4389 9.5054 -3.4729 14 1 1.1372 10.8153 -3.4303 15 1 0.3173 9.0555 -4.8829 16 1 -0.9151 9.6461 -2.8796 17 6 2.2370 -1.1210 -0.7646 18 6 2.2365 -1.1207 0.7654 19 17 3.7829 -0.7136 1.5983 20 17 1.2023 -2.3406 1.5978 21 1 -0.3633 0.8477 -0.5809 22 1 -0.3633 -0.9270 -0.4437 23 1 -0.3634 0.0791 1.0246 24 1 3.1823 1.3087 -0.4452 25 1 2.2766 1.7417 1.0247 26 1 0.0386 4.6867 -1.2214 27 1 0.9433 4.2532 -2.6918 28 1 2.7452 5.8305 -2.0469 29 1 1.8400 6.2633 -0.5767 30 1 3.0483 7.9438 -1.4067 31 1 1.6120 -1.8585 -1.2682 32 1 3.1721 -0.8750 -1.2676 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837737449.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:17 Heat of formation + Delta-G solvation = -94.721686 kcal Electronic energy + Delta-G solvation = -17175.776313 eV Core-core repulsion = 13995.630516 eV Total energy + Delta-G solvation = -3180.145797 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 280.042 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.29893 -38.87893 -36.51901 -36.40286 -35.70092 -33.94824 -31.13969 -29.17633 -27.64461 -25.29327 -22.85328 -22.33761 -20.13229 -19.77933 -17.54831 -17.00760 -16.45091 -16.41411 -15.60084 -15.05641 -14.32259 -13.82751 -13.73623 -13.57543 -13.17949 -12.95292 -12.45237 -12.32084 -12.12539 -11.86151 -11.66354 -11.63139 -11.55722 -11.18467 -10.89630 -10.85621 -10.32504 -10.23529 -10.22460 -10.16126 -10.05909 -9.88279 -8.65114 -8.36319 -6.39516 -4.10912 0.76085 1.74816 2.51855 2.64711 3.00832 3.42736 3.44685 3.63614 3.74794 3.83784 4.35512 4.52462 4.56575 5.08570 5.14558 5.18511 5.22893 5.38361 5.44587 5.55740 5.58364 5.95022 5.95749 6.01379 6.44791 6.74008 7.35883 7.40393 8.04019 8.20331 8.41122 8.82699 9.62753 11.01425 Molecular weight = 280.04amu Principal moments of inertia in cm(-1) A = 0.043087 B = 0.003070 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.696004 B = 9117.145770 C = 9557.543144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 C 0.098 3.902 4 O -0.358 6.358 5 C 0.457 3.543 6 O -0.505 6.505 7 C -0.095 4.095 8 C 0.020 3.980 9 C -0.611 4.611 10 H 0.052 0.948 11 C 0.017 3.983 12 N -0.908 5.908 13 Si 1.071 2.929 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.287 1.287 17 C -0.134 4.134 18 C 0.005 3.995 19 Cl -0.089 7.089 20 Cl -0.089 7.089 21 H 0.090 0.910 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.272 0.728 31 H 0.126 0.874 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 -22.997 3.951 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 C 0.023 3.977 4 O -0.276 6.276 5 C 0.301 3.699 6 O -0.391 6.391 7 C -0.133 4.133 8 C -0.017 4.017 9 C -0.649 4.649 10 H 0.071 0.929 11 C -0.188 4.188 12 N -0.544 5.544 13 Si 0.899 3.101 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.214 1.214 17 C -0.172 4.172 18 C -0.046 4.046 19 Cl -0.062 7.062 20 Cl -0.061 7.061 21 H 0.108 0.892 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.844 -21.403 3.801 21.923 hybrid contribution 0.328 -1.919 0.863 2.130 sum -2.516 -23.322 4.664 23.917 Atomic orbital electron populations 1.21428 0.88846 1.03857 1.03541 1.22269 0.97730 0.89970 0.98775 1.22323 0.93096 0.85244 0.97022 1.86514 1.52131 1.21532 1.67427 1.24812 0.85155 0.81112 0.78823 1.90645 1.24506 1.79507 1.44480 1.21623 0.99648 0.93051 0.98942 1.19144 0.95880 0.88901 0.97805 1.21969 1.10154 0.96587 1.36161 0.92920 1.25883 0.97168 0.98343 0.97404 1.70752 1.14053 1.38495 1.31082 0.83515 0.75055 0.75869 0.75646 1.20735 1.21369 1.21356 1.24274 1.03974 1.00137 0.88789 1.27043 0.87623 0.97786 0.92189 1.98770 1.32845 1.93357 1.81261 1.98746 1.68130 1.57985 1.81280 0.89161 0.91444 0.91061 0.90353 0.90010 0.88674 0.88676 0.96481 0.96466 0.91762 0.85611 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.79 37.16 0.33 -0.73 16 2 C -0.09 -0.84 2.59 -154.50 -0.40 -1.24 16 3 C 0.10 1.25 4.64 37.16 0.17 1.42 16 4 O -0.36 -5.40 8.79 -39.26 -0.34 -5.74 16 5 C 0.46 8.59 7.96 36.00 0.29 8.88 16 6 O -0.51 -11.09 15.73 -18.75 -0.29 -11.38 16 7 C -0.10 -1.88 5.75 -27.88 -0.16 -2.04 16 8 C 0.02 0.51 3.57 -27.88 -0.10 0.41 16 9 C -0.61 -17.07 9.11 -34.44 -0.31 -17.38 16 10 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 11 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 12 N -0.91 -28.12 13.65 55.43 0.76 -27.36 16 13 Si 1.07 24.88 29.90 -169.99 -5.08 19.80 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.13 -1.03 9.51 -26.73 -0.25 -1.29 16 18 C 0.01 0.05 3.61 -26.73 -0.10 -0.05 16 19 Cl -0.09 -0.94 28.32 -51.86 -1.47 -2.41 16 20 Cl -0.09 -0.80 28.32 -51.86 -1.47 -2.27 16 21 H 0.09 0.88 6.87 -51.93 -0.36 0.52 16 22 H 0.07 0.49 7.90 -51.93 -0.41 0.08 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 1.00 7.89 -51.93 -0.41 0.59 16 25 H 0.08 1.11 8.13 -51.93 -0.42 0.68 16 26 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 27 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.02 0.47 7.96 -51.93 -0.41 0.06 16 29 H 0.02 0.47 7.97 -51.93 -0.41 0.06 16 30 H 0.27 8.50 7.22 -40.82 -0.29 8.21 16 31 H 0.13 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.12 0.88 8.05 -51.93 -0.42 0.46 16 LS Contribution 309.23 15.07 4.66 4.66 Total: -1.00 -31.67 309.23 -7.91 -39.58 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.03 Total: -3.23 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.64 Total: -11.64 kcal Atomic # 7 Polarization: -28.12 SS G_CDS: 0.76 Total: -27.36 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.64 Total: -17.13 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -2.94 Total: -4.68 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.67 -7.91 -39.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837737449.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.142 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds