Wall clock time and date at job start Fri Apr 10 2020 14:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00285 * 2 1 4 4 H 1.48498 * 109.47323 * 270.00039 * 3 2 1 5 5 H 1.48510 * 109.47307 * 29.99949 * 3 2 1 6 6 H 1.48501 * 109.47325 * 150.00068 * 3 2 1 7 7 C 1.37881 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99941 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99645 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47010 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00165 * 179.97438 * 10 9 7 12 12 O 1.21654 * 119.99899 * 0.02562 * 11 10 9 13 13 C 1.47080 * 120.00144 * 179.97438 * 11 10 9 14 14 N 1.33578 * 122.55532 * 0.02562 * 13 11 10 15 15 C 1.28952 * 115.83675 * 179.97438 * 14 13 11 16 16 Cl 1.73597 * 125.22364 * 180.02562 * 15 14 13 17 17 S 1.75966 * 109.55414 * 359.78249 * 15 14 13 18 18 C 1.35205 * 122.55671 * 180.02562 * 13 11 10 19 19 Cl 1.73599 * 125.46431 * 359.97438 * 18 13 11 20 20 H 0.97000 * 120.00249 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47360 * 59.99510 * 9 7 2 22 22 H 1.09005 * 109.46560 * 299.99311 * 9 7 2 23 23 H 0.97004 * 119.99995 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 -0.0001 11 6 5.3248 -2.8217 -0.0001 12 8 6.1154 -1.8971 0.0004 13 6 5.8150 -4.2084 0.0003 14 7 4.9931 -5.2614 0.0003 15 6 5.5622 -6.4185 0.0002 16 17 4.7315 -7.9428 -0.0005 17 16 7.3100 -6.2152 -0.0062 18 6 7.1319 -4.5146 0.0008 19 17 8.4332 -3.3654 0.0003 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6809 0.8904 22 1 3.8751 -0.6798 -0.8896 23 1 3.3694 -3.3127 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847968512.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:46 Heat of formation + Delta-G solvation = 2.801269 kcal Electronic energy + Delta-G solvation = -14636.000536 eV Core-core repulsion = 11663.463085 eV Total energy + Delta-G solvation = -2972.537451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 279.958 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.46029 -38.30524 -37.31102 -36.96387 -34.39870 -32.35876 -30.53816 -28.31350 -25.75027 -23.08622 -21.42835 -19.98032 -19.26698 -17.27133 -16.76053 -15.91986 -15.79224 -15.03355 -14.94008 -14.24105 -14.18940 -13.19773 -12.93391 -12.73336 -12.33627 -12.19352 -11.91419 -11.68856 -11.32051 -11.01904 -10.77823 -10.37050 -9.98003 -9.83776 -9.51699 -9.44069 -9.08028 -8.77636 -8.19437 -6.20148 -4.22716 -0.09818 0.00526 0.86694 1.26763 1.71224 1.92842 3.27165 3.33899 3.41567 3.56259 3.72854 4.22544 4.33914 4.73273 5.14613 5.51413 6.72142 6.81091 7.03248 7.14408 7.35063 8.08894 8.47038 8.68700 8.83487 9.38662 10.91790 Molecular weight = 279.96amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.005144 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.463641 B = 5441.656306 C = 6745.973299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.679 5.679 11 C 0.569 3.431 12 O -0.531 6.531 13 C 0.041 3.959 14 N -0.408 5.408 15 C 0.084 3.916 16 Cl 0.046 6.954 17 S 0.249 5.751 18 C -0.157 4.157 19 Cl 0.051 6.949 20 H 0.268 0.732 21 H 0.030 0.970 22 H 0.025 0.975 23 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.804 -16.016 0.014 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.326 5.326 11 C 0.350 3.650 12 O -0.409 6.409 13 C -0.095 4.095 14 N -0.126 5.126 15 C -0.222 4.222 16 Cl 0.073 6.927 17 S 0.499 5.501 18 C -0.308 4.308 19 Cl 0.080 6.920 20 H 0.078 0.922 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 16.432 -15.862 0.010 22.839 hybrid contribution -0.396 1.258 -0.018 1.319 sum 16.036 -14.604 -0.007 21.690 Atomic orbital electron populations 1.69877 1.06200 1.27418 1.49298 1.24782 0.94796 0.99103 0.93868 0.86829 0.80597 0.83265 0.79070 1.19810 1.20853 1.18457 1.21075 0.88313 0.95393 1.53416 0.90058 1.19616 0.95542 0.77927 0.97133 1.46095 1.05033 1.11785 1.69722 1.16945 0.84041 0.84784 0.79236 1.90841 1.55472 1.43160 1.51441 1.20595 0.87598 0.95151 1.06197 1.66940 1.35946 0.96629 1.13044 1.27934 0.92905 0.92893 1.08418 1.98454 1.77328 1.20405 1.96473 1.84025 1.03785 0.95158 1.67164 1.26229 0.95208 0.97996 1.11318 1.98432 1.42025 1.55491 1.96038 0.92237 0.95231 0.95680 0.75818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.96 55.43 0.77 -25.84 14 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 14 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 14 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 14 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 14 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 14 7 C -0.54 -15.15 9.83 -34.44 -0.34 -15.49 14 8 H 0.08 2.38 7.84 -52.49 -0.41 1.97 14 9 C 0.22 5.47 4.50 -5.19 -0.02 5.45 14 10 N -0.68 -14.72 5.54 -62.67 -0.35 -15.07 14 11 C 0.57 11.57 7.79 -12.68 -0.10 11.47 14 12 O -0.53 -11.83 14.82 5.23 0.08 -11.75 14 13 C 0.04 0.68 6.66 -84.60 -0.56 0.11 14 14 N -0.41 -6.21 10.08 -8.23 -0.08 -6.29 14 15 C 0.08 0.99 8.28 51.55 0.43 1.42 14 16 Cl 0.05 0.44 29.33 -51.86 -1.52 -1.08 14 17 S 0.25 2.40 23.19 -107.50 -2.49 -0.09 14 18 C -0.16 -2.16 6.94 29.65 0.21 -1.96 14 19 Cl 0.05 0.71 27.15 -51.86 -1.41 -0.70 14 20 H 0.27 7.47 8.31 -40.82 -0.34 7.13 14 21 H 0.03 0.76 7.20 -51.93 -0.37 0.39 14 22 H 0.03 0.64 7.57 -51.93 -0.39 0.25 14 23 H 0.41 8.34 7.80 -40.82 -0.32 8.02 14 LS Contribution 260.48 15.07 3.93 3.93 Total: -1.00 -30.82 260.48 -6.90 -37.72 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -0.66 Total: -0.70 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -0.49 Total: 3.14 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.34 Total: -47.20 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.49 Total: -0.09 kcal Atomic # 17 Polarization: 1.15 SS G_CDS: -2.93 Total: -1.78 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.82 -6.90 -37.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847968512.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.522 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds