Wall clock time and date at job start Fri Apr 10 2020 14:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36826 * 120.00140 * 2 1 4 4 H 1.07994 * 119.99804 * 203.10842 * 3 2 1 5 5 C 1.38779 * 120.00109 * 23.10432 * 3 2 1 6 6 N 1.31607 * 120.00222 * 13.14509 * 5 3 2 7 7 Si 1.86803 * 120.00066 * 193.14922 * 5 3 2 8 8 H 1.48489 * 109.47184 * 59.99770 * 7 5 3 9 9 H 1.48500 * 109.46960 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46635 * 299.99458 * 7 5 3 11 11 C 1.39389 * 119.99757 * 179.97438 * 2 1 3 12 12 C 1.39206 * 120.50889 * 90.00622 * 11 2 1 13 13 Cl 1.73599 * 119.67441 * 359.97438 * 12 11 2 14 14 N 1.31849 * 120.64433 * 180.02562 * 12 11 2 15 15 C 1.31963 * 121.83837 * 359.97438 * 14 12 11 16 16 C 1.38302 * 120.97325 * 0.02562 * 15 14 12 17 17 Cl 1.73593 * 120.37842 * 179.97438 * 16 15 14 18 18 C 1.38766 * 119.24027 * 359.97438 * 16 15 14 19 19 Cl 1.73598 * 120.83672 * 180.02562 * 18 16 15 20 20 H 1.09004 * 109.46962 * 275.12702 * 1 2 3 21 21 H 1.09001 * 109.47213 * 35.12345 * 1 2 3 22 22 H 1.08998 * 109.47315 * 155.12356 * 1 2 3 23 23 H 0.96995 * 120.00173 * 180.02562 * 6 5 3 24 24 H 1.08009 * 119.51307 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.1641 1.2224 -0.3671 5 6 1.5388 2.3386 0.4716 6 7 0.4148 2.2577 1.1514 7 14 2.3125 4.0065 0.1414 8 1 2.4100 4.2256 -1.3240 9 1 1.4720 5.0706 0.7468 10 1 3.6709 4.0491 0.7398 11 6 2.1619 -1.2072 0.0005 12 6 2.5153 -1.8197 -1.1985 13 17 2.0833 -1.0731 -2.7050 14 7 3.1741 -2.9618 -1.2011 15 6 3.5233 -3.5666 -0.0814 16 6 3.2087 -3.0213 1.1500 17 17 3.6751 -3.8304 2.6133 18 6 2.5159 -1.8201 1.2025 19 17 2.1002 -1.0984 2.7256 20 1 -0.3633 0.0918 1.0236 21 1 -0.3634 0.8405 -0.5913 22 1 -0.3634 -0.9323 -0.4323 23 1 -0.0120 3.0641 1.4807 24 1 4.0621 -4.5016 -0.1274 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798811.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:04 Heat of formation + Delta-G solvation = 30.140334 kcal Electronic energy + Delta-G solvation = -15507.481765 eV Core-core repulsion = 12534.086119 eV Total energy + Delta-G solvation = -2973.395647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 279.963 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.41020 -38.04311 -37.83486 -37.41175 -37.23664 -33.81279 -32.58586 -30.79422 -27.99517 -25.87467 -24.68961 -23.03964 -19.26025 -18.61681 -18.39217 -17.57426 -16.49146 -16.02837 -15.72389 -15.22044 -14.92623 -14.43017 -13.96187 -13.81371 -13.07329 -12.90883 -12.87470 -12.55986 -12.46521 -12.32518 -12.14936 -12.07605 -12.06602 -11.79740 -11.10876 -10.65241 -10.30913 -9.76423 -9.05598 -7.88458 -5.43153 -0.44412 -0.16050 0.64670 0.74905 1.28486 1.49266 1.51010 1.56480 2.29356 2.45675 3.11920 3.28529 3.41895 3.61077 4.00681 4.24217 4.52582 4.75386 4.99380 5.27846 5.62293 5.66916 6.25051 6.43673 7.03643 7.72192 8.09799 9.13704 Molecular weight = 279.96amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.008600 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.400070 B = 3255.022664 C = 4252.608062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.547 5.547 3 C -0.264 4.264 4 H 0.063 0.937 5 C -0.018 4.018 6 N -0.912 5.912 7 Si 0.960 3.040 8 H -0.278 1.278 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.167 3.833 12 C 0.156 3.844 13 Cl -0.012 7.012 14 N -0.468 5.468 15 C 0.132 3.868 16 C -0.082 4.082 17 Cl -0.024 7.024 18 C -0.013 4.013 19 Cl -0.019 7.019 20 H 0.024 0.976 21 H 0.035 0.965 22 H 0.020 0.980 23 H 0.253 0.747 24 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.449 -11.142 -0.365 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.265 5.265 3 C -0.392 4.392 4 H 0.081 0.919 5 C -0.217 4.217 6 N -0.555 5.555 7 Si 0.788 3.212 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.067 3.933 12 C -0.010 4.010 13 Cl 0.016 6.984 14 N -0.180 5.180 15 C -0.027 4.027 16 C -0.112 4.112 17 Cl 0.005 6.995 18 C -0.052 4.052 19 Cl 0.010 6.990 20 H 0.043 0.957 21 H 0.053 0.947 22 H 0.039 0.961 23 H 0.062 0.938 24 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.448 -11.234 -0.959 12.120 hybrid contribution -0.087 1.592 0.939 1.850 sum 4.361 -9.642 -0.020 10.582 Atomic orbital electron populations 1.20683 0.80147 0.96404 0.99027 1.41279 1.02347 0.98442 1.84416 1.19005 0.98677 0.84701 1.36824 0.91907 1.25558 0.98068 1.00976 0.97054 1.70174 1.19848 1.28050 1.37423 0.85480 0.77766 0.80020 0.77960 1.20407 1.21702 1.20557 1.18208 0.95667 0.89956 0.89515 1.23021 0.97401 0.92422 0.88135 1.98381 1.90639 1.79855 1.29478 1.67188 1.11650 1.07979 1.31166 1.23142 0.96506 1.00102 0.82929 1.22295 1.03045 0.94362 0.91540 1.98379 1.90263 1.77502 1.33355 1.22616 0.99006 0.93470 0.90096 1.98402 1.91506 1.82826 1.26253 0.95719 0.94664 0.96133 0.93752 0.76576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.37 8.97 127.77 1.15 9.52 14 2 N -0.55 -25.56 1.85 -534.60 -0.99 -26.55 14 3 C -0.26 -13.47 9.63 84.04 0.81 -12.66 14 4 H 0.06 3.26 7.86 -2.91 -0.02 3.23 14 5 C -0.02 -0.94 5.10 84.86 0.43 -0.51 14 6 N -0.91 -49.18 10.72 21.64 0.23 -48.94 14 7 Si 0.96 42.82 29.57 68.60 2.03 44.85 14 8 H -0.28 -12.21 7.11 99.48 0.71 -11.50 14 9 H -0.29 -13.02 7.11 99.48 0.71 -12.32 14 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 14 11 C 0.17 6.90 5.04 38.47 0.19 7.09 14 12 C 0.16 5.86 7.30 84.92 0.62 6.48 14 13 Cl -0.01 -0.44 28.60 -2.72 -0.08 -0.52 14 14 N -0.47 -15.11 10.33 -185.97 -1.92 -17.04 14 15 C 0.13 3.48 10.97 84.69 0.93 4.40 14 16 C -0.08 -2.42 6.34 22.41 0.14 -2.28 14 17 Cl -0.02 -0.59 28.10 -2.72 -0.08 -0.66 14 18 C -0.01 -0.50 6.40 22.70 0.15 -0.35 14 19 Cl -0.02 -0.75 27.69 -2.72 -0.08 -0.83 14 20 H 0.02 1.23 7.33 -2.38 -0.02 1.21 14 21 H 0.03 1.73 7.35 -2.39 -0.02 1.72 14 22 H 0.02 0.84 8.01 -2.39 -0.02 0.82 14 23 H 0.25 13.41 8.31 -92.71 -0.77 12.64 14 24 H 0.22 3.67 8.06 -2.91 -0.02 3.65 14 Total: -1.00 -54.97 264.86 4.79 -50.18 By element: Atomic # 1 Polarization: -13.42 SS G_CDS: 1.25 Total: -12.17 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 4.42 Total: 11.68 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -2.68 Total: -92.53 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.23 Total: -2.02 kcal Total: -54.97 4.79 -50.18 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798811.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.324 kcal (2) G-P(sol) polarization free energy of solvation -54.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds