Wall clock time and date at job start Fri Apr 10 2020 14:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00151 * 2 1 4 4 H 1.48507 * 109.47245 * 240.00098 * 3 2 1 5 5 H 1.48496 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47055 * 120.00488 * 3 2 1 7 7 C 1.37882 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99687 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99927 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47124 * 299.99607 * 9 7 2 11 11 C 1.52998 * 109.47176 * 60.00062 * 9 7 2 12 12 Cl 1.80306 * 109.46760 * 184.99800 * 11 9 7 13 13 O 1.42905 * 109.46777 * 180.02562 * 9 7 2 14 14 C 1.35896 * 117.00039 * 150.00015 * 13 9 7 15 15 C 1.33890 * 125.23043 * 179.71691 * 14 13 9 16 16 C 1.38583 * 114.76666 * 179.83129 * 15 14 13 17 17 C 1.33242 * 114.96744 * 0.46282 * 16 15 14 18 18 C 1.50694 * 125.15006 * 179.75576 * 17 16 15 19 19 Cl 1.80305 * 109.47260 * 90.01822 * 18 17 16 20 20 S 1.75869 * 109.70631 * 359.75117 * 17 16 15 21 21 H 0.97006 * 119.99899 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47009 * 304.99618 * 11 9 7 23 23 H 1.08995 * 109.47158 * 64.99924 * 11 9 7 24 24 H 1.08002 * 122.61789 * 0.02562 * 15 14 13 25 25 H 1.08000 * 122.51813 * 180.18634 * 16 15 14 26 26 H 1.08998 * 109.47234 * 210.02211 * 18 17 16 27 27 H 1.09001 * 109.47192 * 330.01834 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 1 0.6239 -2.5575 0.8880 11 6 0.3717 -2.5793 -1.2513 12 17 -0.6389 -4.0709 -1.1804 13 8 2.1795 -3.5854 -0.0015 14 6 1.7829 -4.7360 0.6031 15 6 2.5156 -5.8529 0.6944 16 6 1.8988 -6.8990 1.3619 17 6 0.6687 -6.6378 1.8022 18 6 -0.2095 -7.6079 2.5495 19 17 0.0842 -7.4430 4.3209 20 16 0.2251 -4.9894 1.3794 21 1 -0.4850 0.8401 -0.0004 22 1 -0.2757 -1.7036 -1.2969 23 1 1.0037 -2.6105 -2.1388 24 1 3.5110 -5.9313 0.2827 25 1 2.3775 -7.8558 1.5101 26 1 -1.2557 -7.3920 2.3331 27 1 0.0239 -8.6253 2.2357 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205873564.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:07 Heat of formation + Delta-G solvation = -48.765099 kcal Electronic energy + Delta-G solvation = -15298.945352 eV Core-core repulsion = 12427.712159 eV Total energy + Delta-G solvation = -2871.233193 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 279.983 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15701 -38.34817 -36.83769 -36.58097 -35.40225 -32.22385 -31.05594 -27.39515 -26.77525 -23.92154 -23.38500 -20.76740 -19.17814 -18.44735 -17.03988 -16.89506 -16.46661 -15.81144 -15.35018 -15.28626 -14.92010 -14.50071 -14.12164 -13.94557 -13.55505 -13.27806 -13.05143 -12.96314 -12.74905 -12.47994 -12.21344 -11.88239 -11.55395 -11.46719 -11.33902 -11.06815 -10.98180 -10.64048 -9.15720 -8.82585 -8.43236 -6.61026 0.03427 0.44114 1.04203 1.37632 1.41422 1.42685 1.51466 1.54460 2.07136 2.21477 2.59227 2.91930 3.69631 4.10720 4.18803 4.25098 4.44639 4.55177 4.70324 4.79327 5.10508 5.15093 5.23393 5.47394 5.60407 5.71998 6.27454 6.59056 7.11560 8.63419 Molecular weight = 279.98amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.005341 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.767964 B = 5240.813365 C = 5519.828322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.214 3.786 10 H 0.026 0.974 11 C -0.035 4.035 12 Cl -0.208 7.208 13 O -0.296 6.296 14 C 0.037 3.963 15 C -0.224 4.224 16 C -0.069 4.069 17 C -0.255 4.255 18 C 0.059 3.941 19 Cl -0.199 7.199 20 S 0.089 5.911 21 H 0.278 0.722 22 H 0.121 0.879 23 H 0.080 0.920 24 H 0.151 0.849 25 H 0.173 0.827 26 H 0.108 0.892 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 -11.740 1.846 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.173 4.173 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.591 4.591 8 H 0.088 0.912 9 C 0.157 3.843 10 H 0.043 0.957 11 C -0.099 4.099 12 Cl -0.182 7.182 13 O -0.211 6.211 14 C -0.127 4.127 15 C -0.253 4.253 16 C -0.100 4.100 17 C -0.372 4.372 18 C -0.005 4.005 19 Cl -0.173 7.173 20 S 0.349 5.651 21 H 0.088 0.912 22 H 0.139 0.861 23 H 0.099 0.901 24 H 0.169 0.831 25 H 0.190 0.810 26 H 0.126 0.874 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.948 -10.776 2.098 11.150 hybrid contribution 1.310 0.317 -0.260 1.373 sum -0.638 -10.459 1.838 10.638 Atomic orbital electron populations 1.69871 1.07111 1.29358 1.47944 1.25747 0.95993 1.02702 0.92830 0.85251 0.78225 0.76897 0.79303 1.18965 1.19873 1.19525 1.21150 0.94294 0.88948 1.54751 0.91190 1.20469 0.87037 0.83300 0.93445 0.95703 1.25501 0.95409 0.87687 1.01253 1.98652 1.75373 1.45942 1.98188 1.86013 1.43793 1.19374 1.71870 1.24119 0.97259 0.91261 1.00024 1.19872 1.03457 0.91572 1.10435 1.19952 0.92921 1.00138 0.96964 1.24356 1.01419 0.98952 1.12438 1.22678 0.99771 0.99835 0.78235 1.98734 1.97386 1.98776 1.22385 1.85105 1.15172 1.11036 1.53795 0.91205 0.86122 0.90135 0.83106 0.80957 0.87363 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.96 11.29 21.45 0.24 -46.72 15 2 C 0.03 1.48 5.29 84.66 0.45 1.93 15 3 Si 0.98 40.03 29.54 68.60 2.03 42.06 15 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 6 H -0.27 -10.95 7.11 99.48 0.71 -10.25 15 7 C -0.55 -29.22 8.89 25.60 0.23 -28.99 15 8 H 0.07 3.71 7.81 -2.91 -0.02 3.68 15 9 C 0.21 10.61 2.24 29.85 0.07 10.68 15 10 H 0.03 1.35 6.62 -2.39 -0.02 1.33 15 11 C -0.04 -1.61 6.17 71.98 0.44 -1.17 15 12 Cl -0.21 -8.35 24.77 -2.72 -0.07 -8.42 15 13 O -0.30 -14.00 9.83 -92.39 -0.91 -14.91 15 14 C 0.04 1.50 6.39 66.83 0.43 1.92 15 15 C -0.22 -7.57 10.22 21.36 0.22 -7.36 15 16 C -0.07 -1.88 10.04 21.22 0.21 -1.66 15 17 C -0.25 -7.20 5.88 24.56 0.14 -7.05 15 18 C 0.06 1.22 7.14 71.23 0.51 1.73 15 19 Cl -0.20 -4.85 29.13 -2.72 -0.08 -4.93 15 20 S 0.09 3.28 18.17 -56.49 -1.03 2.25 15 21 H 0.28 13.55 8.31 -92.70 -0.77 12.78 15 22 H 0.12 5.92 5.95 -2.39 -0.01 5.91 15 23 H 0.08 3.57 8.14 -2.39 -0.02 3.55 15 24 H 0.15 4.63 8.06 -2.91 -0.02 4.61 15 25 H 0.17 3.36 8.06 -2.91 -0.02 3.33 15 26 H 0.11 2.06 8.14 -2.39 -0.02 2.04 15 27 H 0.14 1.97 8.14 -2.39 -0.02 1.95 15 Total: -1.00 -55.61 275.54 4.08 -51.53 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.19 Total: 9.10 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 2.70 Total: -29.97 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.24 Total: -46.72 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.91 Total: -14.91 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.03 Total: 2.25 kcal Atomic # 17 Polarization: -13.20 SS G_CDS: -0.15 Total: -13.35 kcal Total: -55.61 4.08 -51.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205873564.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.767 kcal (2) G-P(sol) polarization free energy of solvation -55.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds