Wall clock time and date at job start Fri Apr 10 2020 14:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99986 * 2 1 4 4 H 1.48504 * 109.47103 * 270.00270 * 3 2 1 5 5 H 1.48495 * 109.47113 * 30.00134 * 3 2 1 6 6 H 1.48499 * 109.47327 * 150.00168 * 3 2 1 7 7 C 1.37873 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00186 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99909 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47081 * 299.99946 * 9 7 2 11 11 C 1.52997 * 109.47202 * 60.00237 * 9 7 2 12 12 Cl 1.80295 * 109.47200 * 185.00135 * 11 9 7 13 13 O 1.42900 * 109.47081 * 179.97438 * 9 7 2 14 14 C 1.35569 * 117.00114 * 149.99694 * 13 9 7 15 15 N 1.32767 * 120.50994 * 0.02562 * 14 13 9 16 16 C 1.31914 * 120.72942 * 180.02562 * 15 14 13 17 17 Cl 1.73603 * 119.08575 * 179.71720 * 16 15 14 18 18 N 1.31875 * 121.82503 * 359.97438 * 16 15 14 19 19 C 1.32513 * 120.96995 * 0.02562 * 18 16 15 20 20 C 1.38390 * 119.16116 * 359.97438 * 19 18 16 21 21 F 1.35092 * 120.82743 * 180.02562 * 20 19 18 22 22 H 0.97008 * 120.00148 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.47246 * 304.99946 * 11 9 7 24 24 H 1.08997 * 109.47272 * 64.99934 * 11 9 7 25 25 H 1.07998 * 120.41676 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 0.3709 -2.5799 -1.2495 12 17 -0.6395 -4.0714 -1.1772 13 8 2.1796 -3.5853 -0.0017 14 6 1.7849 -4.7331 0.6021 15 7 0.5846 -4.8217 1.1625 16 6 0.1964 -5.9363 1.7516 17 17 -1.3793 -6.0027 2.4772 18 7 0.9740 -6.9999 1.8090 19 6 2.1856 -6.9885 1.2725 20 6 2.6341 -5.8399 0.6442 21 9 3.8631 -5.7913 0.0855 22 1 -0.4851 0.8401 0.0004 23 1 -0.2766 -1.7042 -1.2950 24 1 1.0023 -2.6115 -2.1374 25 1 2.8151 -7.8645 1.3250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226740778.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:23 Heat of formation + Delta-G solvation = -48.599321 kcal Electronic energy + Delta-G solvation = -17580.740411 eV Core-core repulsion = 14175.593982 eV Total energy + Delta-G solvation = -3405.146429 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 279.992 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.73501 -40.86698 -38.22880 -36.67300 -34.90458 -33.73149 -33.05326 -30.95552 -29.35005 -25.44287 -24.69539 -23.86271 -21.42893 -18.57735 -18.26569 -17.29291 -16.70305 -16.28162 -15.92235 -14.92459 -14.64985 -14.29692 -13.99779 -13.75694 -13.18024 -13.01298 -12.17351 -12.11125 -11.58565 -11.45753 -11.29487 -11.23159 -11.17355 -10.92000 -10.53817 -10.37978 -9.73409 -9.49722 -9.19902 -9.08105 -8.76838 -8.37246 -6.49393 -4.59426 0.75007 1.16857 1.54060 3.09094 3.14253 3.18841 3.28067 3.40006 3.66871 4.06304 4.06526 4.26501 4.77475 4.86522 4.92103 5.23652 6.07976 6.16547 6.22719 6.68678 6.82352 7.08269 7.38518 7.62926 7.84696 7.93310 8.51487 9.08020 10.57308 Molecular weight = 279.99amu Principal moments of inertia in cm(-1) A = 0.019643 B = 0.006740 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.132622 B = 4153.080656 C = 4742.302547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.067 3.933 3 Si 0.919 3.081 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.208 3.792 10 H 0.073 0.927 11 C -0.033 4.033 12 Cl -0.233 7.233 13 O -0.279 6.279 14 C 0.379 3.621 15 N -0.509 5.509 16 C 0.390 3.610 17 Cl 0.026 6.974 18 N -0.521 5.521 19 C 0.155 3.845 20 C -0.037 4.037 21 F -0.115 7.115 22 H 0.274 0.726 23 H 0.137 0.863 24 H 0.072 0.928 25 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 -9.477 1.670 9.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.095 0.905 9 C 0.154 3.846 10 H 0.090 0.910 11 C -0.096 4.096 12 Cl -0.207 7.207 13 O -0.181 6.181 14 C 0.189 3.811 15 N -0.241 5.241 16 C 0.096 3.904 17 Cl 0.054 6.946 18 N -0.244 5.244 19 C -0.008 4.008 20 C -0.063 4.063 21 F -0.093 7.093 22 H 0.084 0.916 23 H 0.155 0.845 24 H 0.090 0.910 25 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.252 -9.297 1.931 9.499 hybrid contribution 0.921 0.968 -0.497 1.426 sum 1.174 -8.329 1.434 8.533 Atomic orbital electron populations 1.69813 1.05974 1.28237 1.47842 1.24958 0.95207 0.99769 0.93754 0.86139 0.79643 0.81145 0.78589 1.20070 1.20643 1.19356 1.20965 0.94326 0.87604 1.53868 0.90479 1.20789 0.87088 0.81024 0.95699 0.90962 1.25636 0.95472 0.87406 1.01082 1.98643 1.75570 1.47544 1.98978 1.86431 1.45098 1.18980 1.67550 1.20267 0.86410 0.87925 0.86486 1.67883 1.15290 1.27526 1.13431 1.22618 0.90334 0.85471 0.91974 1.98425 1.18727 1.97918 1.79533 1.67896 1.04737 1.29056 1.22671 1.23017 0.91372 0.96030 0.90356 1.18548 0.84344 0.95934 1.07504 1.91527 1.38090 1.96641 1.83087 0.91638 0.84538 0.90966 0.79494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.73 11.29 55.43 0.63 -22.11 15 2 C 0.07 1.69 5.29 -17.82 -0.09 1.59 15 3 Si 0.92 19.57 29.54 -169.99 -5.02 14.55 15 4 H -0.28 -5.78 7.11 56.52 0.40 -5.37 15 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 6 H -0.27 -5.72 7.11 56.52 0.40 -5.31 15 7 C -0.53 -13.58 8.89 -34.44 -0.31 -13.88 15 8 H 0.08 1.97 7.81 -52.49 -0.41 1.56 15 9 C 0.21 5.04 2.26 -27.88 -0.06 4.97 15 10 H 0.07 1.90 7.02 -51.93 -0.36 1.53 15 11 C -0.03 -0.76 6.17 37.16 0.23 -0.53 15 12 Cl -0.23 -4.90 25.93 -51.86 -1.34 -6.25 15 13 O -0.28 -6.33 9.66 -18.40 -0.18 -6.51 15 14 C 0.38 7.59 6.67 -16.65 -0.11 7.48 15 15 N -0.51 -10.16 6.52 -11.65 -0.08 -10.23 15 16 C 0.39 6.86 8.18 -91.98 -0.75 6.11 15 17 Cl 0.03 0.41 29.27 -51.86 -1.52 -1.11 15 18 N -0.52 -8.19 10.40 -11.66 -0.12 -8.31 15 19 C 0.16 2.14 11.29 -17.20 -0.19 1.95 15 20 C -0.04 -0.62 7.39 -39.03 -0.29 -0.91 15 21 F -0.11 -1.89 17.19 2.25 0.04 -1.85 15 22 H 0.27 6.67 8.31 -40.82 -0.34 6.33 15 23 H 0.14 3.33 5.95 -51.93 -0.31 3.02 15 24 H 0.07 1.58 8.14 -51.93 -0.42 1.16 15 25 H 0.19 1.70 8.06 -52.49 -0.42 1.28 15 LS Contribution 262.54 15.07 3.96 3.96 Total: -1.00 -26.13 262.54 -6.28 -32.41 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -1.06 Total: -1.34 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -1.58 Total: 6.78 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.43 Total: -40.65 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.18 Total: -6.51 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 17 Polarization: -4.49 SS G_CDS: -2.86 Total: -7.36 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.13 -6.28 -32.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226740778.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.193 kcal (2) G-P(sol) polarization free energy of solvation -26.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds