Wall clock time and date at job start Fri Apr 10 2020 14:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99986 * 2 1 4 4 H 1.48504 * 109.47103 * 270.00270 * 3 2 1 5 5 H 1.48495 * 109.47113 * 30.00134 * 3 2 1 6 6 H 1.48499 * 109.47327 * 150.00168 * 3 2 1 7 7 C 1.37873 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00186 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99909 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47081 * 299.99946 * 9 7 2 11 11 C 1.52997 * 109.47202 * 60.00237 * 9 7 2 12 12 Cl 1.80295 * 109.47200 * 185.00135 * 11 9 7 13 13 O 1.42900 * 109.47081 * 179.97438 * 9 7 2 14 14 C 1.35569 * 117.00114 * 149.99694 * 13 9 7 15 15 N 1.32767 * 120.50994 * 0.02562 * 14 13 9 16 16 C 1.31914 * 120.72942 * 180.02562 * 15 14 13 17 17 Cl 1.73603 * 119.08575 * 179.71720 * 16 15 14 18 18 N 1.31875 * 121.82503 * 359.97438 * 16 15 14 19 19 C 1.32513 * 120.96995 * 0.02562 * 18 16 15 20 20 C 1.38390 * 119.16116 * 359.97438 * 19 18 16 21 21 F 1.35092 * 120.82743 * 180.02562 * 20 19 18 22 22 H 0.97008 * 120.00148 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.47246 * 304.99946 * 11 9 7 24 24 H 1.08997 * 109.47272 * 64.99934 * 11 9 7 25 25 H 1.07998 * 120.41676 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 0.3709 -2.5799 -1.2495 12 17 -0.6395 -4.0714 -1.1772 13 8 2.1796 -3.5853 -0.0017 14 6 1.7849 -4.7331 0.6021 15 7 0.5846 -4.8217 1.1625 16 6 0.1964 -5.9363 1.7516 17 17 -1.3793 -6.0027 2.4772 18 7 0.9740 -6.9999 1.8090 19 6 2.1856 -6.9885 1.2725 20 6 2.6341 -5.8399 0.6442 21 9 3.8631 -5.7913 0.0855 22 1 -0.4851 0.8401 0.0004 23 1 -0.2766 -1.7042 -1.2950 24 1 1.0023 -2.6115 -2.1374 25 1 2.8151 -7.8645 1.3250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226740778.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:23 Heat of formation + Delta-G solvation = -63.981586 kcal Electronic energy + Delta-G solvation = -17581.407436 eV Core-core repulsion = 14175.593982 eV Total energy + Delta-G solvation = -3405.813454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 279.992 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.04438 -42.26052 -39.82480 -37.97035 -36.65179 -35.53322 -34.51872 -32.42944 -31.07184 -27.34606 -26.10224 -25.24908 -23.16194 -20.02491 -19.80311 -18.66996 -18.45461 -17.74193 -17.40154 -16.67859 -16.11821 -15.58878 -15.47978 -15.34202 -14.88167 -14.41159 -13.91761 -13.84245 -13.12013 -13.01899 -12.87199 -12.77553 -12.60867 -12.53345 -12.20130 -11.99941 -11.51856 -11.23281 -10.77434 -10.73811 -10.44618 -9.86469 -8.39870 -6.57974 -0.57876 -0.17539 0.23083 1.39933 1.42535 1.53686 1.58051 1.80312 2.30829 2.35175 2.77309 2.80949 2.95206 3.48383 3.56140 4.03610 4.30379 4.34074 4.77763 5.01559 5.19405 5.39310 5.51884 5.75934 6.12154 6.51616 6.61129 7.13743 8.66709 Molecular weight = 279.99amu Principal moments of inertia in cm(-1) A = 0.019643 B = 0.006740 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.132622 B = 4153.080656 C = 4742.302547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.030 3.970 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.218 3.782 10 H 0.044 0.956 11 C -0.024 4.024 12 Cl -0.217 7.217 13 O -0.298 6.298 14 C 0.348 3.652 15 N -0.534 5.534 16 C 0.379 3.621 17 Cl 0.038 6.962 18 N -0.513 5.513 19 C 0.184 3.816 20 C -0.037 4.037 21 F -0.113 7.113 22 H 0.277 0.723 23 H 0.119 0.881 24 H 0.076 0.924 25 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 -10.571 1.853 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.172 4.172 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.163 3.837 10 H 0.062 0.938 11 C -0.087 4.087 12 Cl -0.191 7.191 13 O -0.201 6.201 14 C 0.160 3.840 15 N -0.267 5.267 16 C 0.086 3.914 17 Cl 0.066 6.934 18 N -0.234 5.234 19 C 0.020 3.980 20 C -0.063 4.063 21 F -0.092 7.092 22 H 0.087 0.913 23 H 0.137 0.863 24 H 0.094 0.906 25 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.944 -10.420 2.121 10.676 hybrid contribution 0.672 1.138 -0.494 1.411 sum 1.616 -9.282 1.627 9.562 Atomic orbital electron populations 1.69905 1.07127 1.29134 1.47965 1.25721 0.95935 1.02597 0.92954 0.85203 0.78340 0.77232 0.78871 1.19205 1.20131 1.19281 1.21196 0.94205 0.88944 1.54851 0.91240 1.20405 0.86960 0.81450 0.94860 0.93799 1.25318 0.95195 0.87490 1.00705 1.98634 1.75067 1.46432 1.98988 1.86359 1.45038 1.19706 1.68961 1.20589 0.87607 0.88015 0.87817 1.67771 1.15801 1.28882 1.14250 1.22880 0.91144 0.85405 0.92013 1.98425 1.17945 1.97854 1.79190 1.68066 1.05208 1.27895 1.22278 1.23902 0.90662 0.96269 0.87172 1.18712 0.84049 0.95718 1.07778 1.91534 1.37866 1.96623 1.83133 0.91344 0.86262 0.90569 0.73968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.22 11.29 21.45 0.24 -46.98 15 2 C 0.03 1.51 5.29 84.65 0.45 1.96 15 3 Si 0.98 40.01 29.54 68.60 2.03 42.03 15 4 H -0.27 -10.50 7.11 99.48 0.71 -9.80 15 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 15 6 H -0.27 -10.83 7.11 99.48 0.71 -10.13 15 7 C -0.55 -29.02 8.89 25.60 0.23 -28.79 15 8 H 0.07 3.64 7.81 -2.91 -0.02 3.62 15 9 C 0.22 10.84 2.26 29.85 0.07 10.91 15 10 H 0.04 2.40 7.02 -2.38 -0.02 2.39 15 11 C -0.02 -1.12 6.17 71.98 0.44 -0.67 15 12 Cl -0.22 -9.14 25.93 -2.72 -0.07 -9.21 15 13 O -0.30 -13.75 9.66 -88.76 -0.86 -14.61 15 14 C 0.35 13.89 6.67 84.87 0.57 14.45 15 15 N -0.53 -21.27 6.52 -303.43 -1.98 -23.25 15 16 C 0.38 12.87 8.18 180.82 1.48 14.35 15 17 Cl 0.04 1.15 29.27 -2.72 -0.08 1.07 15 18 N -0.51 -14.73 10.40 -190.79 -1.98 -16.71 15 19 C 0.18 4.40 11.29 84.63 0.96 5.36 15 20 C -0.04 -1.17 7.39 22.63 0.17 -1.00 15 21 F -0.11 -3.50 17.19 44.97 0.77 -2.73 15 22 H 0.28 13.57 8.31 -92.70 -0.77 12.80 15 23 H 0.12 5.97 5.95 -2.38 -0.01 5.96 15 24 H 0.08 3.40 8.14 -2.39 -0.02 3.38 15 25 H 0.24 3.01 8.06 -2.91 -0.02 2.99 15 Total: -1.00 -56.55 262.54 3.68 -52.87 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: 1.25 Total: 0.94 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 4.35 Total: 16.56 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -3.72 Total: -86.94 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.86 Total: -14.61 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.77 Total: -2.73 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 17 Polarization: -7.99 SS G_CDS: -0.15 Total: -8.14 kcal Total: -56.55 3.68 -52.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226740778.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.107 kcal (2) G-P(sol) polarization free energy of solvation -56.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds