Wall clock time and date at job start Fri Apr 10 2020 14:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 C 1.50702 * 109.46920 * 119.99917 * 2 1 3 5 5 N 1.28018 * 119.99997 * 0.02562 * 4 2 1 6 6 N 1.40098 * 120.00370 * 179.97438 * 5 4 2 7 7 C 1.39063 * 120.00496 * 180.02562 * 6 5 4 8 8 N 1.32445 * 119.71356 * 359.97438 * 7 6 5 9 9 C 1.31923 * 121.63706 * 179.97438 * 8 7 6 10 10 C 1.38093 * 120.88133 * 359.97438 * 9 8 7 11 11 C 1.38846 * 119.33844 * 0.30064 * 10 9 8 12 12 C 1.38430 * 118.49481 * 359.45466 * 11 10 9 13 13 Cl 1.73600 * 120.46266 * 180.24244 * 12 11 10 14 14 C 1.52997 * 109.47070 * 239.99801 * 2 1 3 15 15 C 1.50702 * 109.46824 * 60.00458 * 14 2 1 16 16 H 1.07999 * 120.00314 * 0.02562 * 15 14 2 17 17 C 1.37880 * 119.99982 * 179.97438 * 15 14 2 18 18 N 1.31508 * 120.00379 * 179.97438 * 17 15 14 19 19 Si 1.86809 * 119.99740 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47219 * 89.99860 * 19 17 15 21 21 H 1.48501 * 109.46873 * 209.99955 * 19 17 15 22 22 H 1.48495 * 109.47061 * 329.99499 * 19 17 15 23 23 H 1.09008 * 109.47217 * 300.00265 * 1 2 3 24 24 H 1.09007 * 109.46849 * 59.99758 * 1 2 3 25 25 H 1.08993 * 109.47214 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47053 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47250 * 300.00128 * 3 2 1 28 28 H 1.09009 * 109.47141 * 60.00272 * 3 2 1 29 29 H 1.07998 * 120.00502 * 179.97438 * 4 2 1 30 30 H 0.97001 * 119.99698 * 359.97438 * 6 5 4 31 31 H 1.07996 * 119.56504 * 179.97438 * 9 8 7 32 32 H 1.08002 * 120.32744 * 180.02562 * 10 9 8 33 33 H 1.07998 * 120.74659 * 179.72290 * 11 10 9 34 34 H 1.09000 * 109.46932 * 179.97438 * 14 2 1 35 35 H 1.08999 * 109.47000 * 300.00334 * 14 2 1 36 36 H 0.97002 * 120.00081 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.2004 -1.1973 2.0729 6 7 1.6672 -1.8582 3.2166 7 6 0.7635 -2.3876 4.1314 8 7 -0.5374 -2.2634 3.9162 9 6 -1.4278 -2.7513 4.7584 10 6 -1.0318 -3.4147 5.9030 11 6 0.3228 -3.5620 6.1697 12 6 1.2341 -3.0443 5.2653 13 17 2.9399 -3.2051 5.5449 14 6 2.0400 -0.7213 -1.2492 15 6 1.5377 -0.0108 -2.4796 16 1 0.9172 0.8676 -2.3806 17 6 1.8712 -0.4815 -3.7320 18 7 1.4325 0.1381 -4.8057 19 14 2.9451 -2.0005 -3.9033 20 1 2.0864 -3.2111 -3.9493 21 1 3.7375 -1.9076 -5.1558 22 1 3.8651 -2.0899 -2.7411 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 3.0941 -0.8095 1.4013 30 1 2.6209 -1.9472 3.3699 31 1 -2.4806 -2.6305 4.5500 32 1 -1.7685 -3.8110 6.5862 33 1 0.6578 -4.0728 7.0603 34 1 3.1300 -0.7209 -1.2494 35 1 1.6766 -1.7489 -1.2492 36 1 1.6675 -0.1929 -5.6867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755655473.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:42 Heat of formation + Delta-G solvation = 47.169081 kcal Electronic energy + Delta-G solvation = -19009.312149 eV Core-core repulsion = 15940.451982 eV Total energy + Delta-G solvation = -3068.860167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26007 -39.33756 -37.69259 -37.20132 -34.59396 -33.45706 -33.04982 -30.08286 -29.31578 -27.93988 -25.71693 -24.69311 -23.97165 -22.62269 -19.89737 -18.86254 -18.81592 -18.23987 -17.37748 -16.71363 -16.26953 -15.94398 -15.87456 -15.39622 -14.84310 -14.64398 -14.27956 -14.18663 -13.74710 -13.37992 -13.13068 -13.02325 -12.83832 -12.74242 -12.53446 -12.27971 -12.24017 -11.80656 -11.71791 -11.40565 -11.19140 -10.93755 -10.84771 -10.68270 -10.49097 -10.42382 -8.78411 -8.19156 -6.19727 -0.01632 0.25659 0.98343 1.31114 1.38552 1.39992 1.47693 1.49936 2.41403 2.79783 3.16097 3.29046 3.62767 3.84456 3.99296 4.08719 4.22500 4.31576 4.38098 4.50341 4.71020 4.87375 4.98284 5.01715 5.08304 5.14121 5.19852 5.32832 5.40223 5.42483 5.50086 5.55091 5.69948 5.77127 5.94019 6.40592 6.83670 6.87308 7.35561 7.42459 8.96587 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.003729 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.283738 B = 7506.197025 C = 7833.386447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.002 3.998 3 C -0.118 4.118 4 C 0.084 3.916 5 N -0.247 5.247 6 N -0.579 5.579 7 C 0.406 3.594 8 N -0.534 5.534 9 C 0.135 3.865 10 C -0.202 4.202 11 C -0.024 4.024 12 C -0.162 4.162 13 Cl -0.059 7.059 14 C 0.005 3.995 15 C -0.503 4.503 16 H 0.052 0.948 17 C 0.008 3.992 18 N -0.951 5.951 19 Si 0.934 3.066 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.245 1.245 23 H 0.051 0.949 24 H 0.044 0.956 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.124 0.876 30 H 0.399 0.601 31 H 0.186 0.814 32 H 0.181 0.819 33 H 0.175 0.825 34 H 0.029 0.971 35 H 0.007 0.993 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.139 -7.946 25.627 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.001 4.001 3 C -0.177 4.177 4 C -0.131 4.131 5 N -0.049 5.049 6 N -0.303 5.303 7 C 0.171 3.829 8 N -0.250 5.250 9 C -0.023 4.023 10 C -0.224 4.224 11 C -0.050 4.050 12 C -0.197 4.197 13 Cl -0.031 7.031 14 C -0.034 4.034 15 C -0.542 4.542 16 H 0.070 0.930 17 C -0.189 4.189 18 N -0.593 5.593 19 Si 0.759 3.241 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.169 1.169 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.241 0.759 31 H 0.203 0.797 32 H 0.198 0.802 33 H 0.193 0.807 34 H 0.047 0.953 35 H 0.025 0.975 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.957 -7.655 24.952 26.117 hybrid contribution 2.096 -0.937 -0.169 2.302 sum 1.139 -8.591 24.783 26.254 Atomic orbital electron populations 1.21458 0.94153 1.00665 1.00119 1.19339 0.96147 0.95361 0.89247 1.21647 1.01209 0.93460 1.01356 1.26298 0.97328 0.95211 0.94263 1.74340 1.28824 1.06776 0.94930 1.45605 1.06731 1.58260 1.19737 1.17912 0.88182 0.90496 0.86287 1.67475 1.00082 1.24051 1.33424 1.23279 0.99714 0.90229 0.89092 1.22348 0.96142 1.03760 1.00146 1.21700 0.92079 0.93819 0.97437 1.21357 0.87063 1.11921 0.99351 1.98351 1.12030 1.96904 1.95795 1.19542 0.96568 0.95007 0.92257 1.21350 1.30392 1.12391 0.90027 0.92954 1.25810 0.97470 0.99837 0.95761 1.70040 1.48066 1.42707 0.98454 0.85896 0.79848 0.80108 0.78207 1.20353 1.21317 1.16863 0.92968 0.93653 0.94396 0.91775 0.92702 0.92376 0.85890 0.75902 0.79707 0.80183 0.80742 0.95278 0.97480 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.27 7.45 71.98 0.54 -3.73 16 2 C 0.00 0.07 0.75 -52.93 -0.04 0.03 16 3 C -0.12 -4.12 8.20 71.98 0.59 -3.53 16 4 C 0.08 2.78 9.56 88.66 0.85 3.63 16 5 N -0.25 -8.52 9.74 -50.46 -0.49 -9.01 16 6 N -0.58 -17.17 6.37 -55.31 -0.35 -17.52 16 7 C 0.41 11.37 7.60 133.05 1.01 12.38 16 8 N -0.53 -15.53 9.91 -193.09 -1.91 -17.44 16 9 C 0.13 2.62 11.17 84.64 0.95 3.56 16 10 C -0.20 -2.67 10.11 22.38 0.23 -2.44 16 11 C -0.02 -0.36 9.97 22.46 0.22 -0.13 16 12 C -0.16 -3.46 6.36 22.55 0.14 -3.32 16 13 Cl -0.06 -1.12 27.62 -2.72 -0.08 -1.20 16 14 C 0.00 0.22 3.09 29.85 0.09 0.31 16 15 C -0.50 -27.54 8.20 25.60 0.21 -27.33 16 16 H 0.05 3.10 5.92 -2.91 -0.02 3.09 16 17 C 0.01 0.43 5.47 84.66 0.46 0.89 16 18 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 19 Si 0.93 44.02 27.47 68.60 1.88 45.90 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 23 H 0.05 1.93 8.06 -2.38 -0.02 1.91 16 24 H 0.04 1.98 6.62 -2.38 -0.02 1.96 16 25 H 0.04 1.58 8.06 -2.39 -0.02 1.56 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.05 2.18 6.62 -2.39 -0.02 2.16 16 28 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.12 3.35 8.00 -2.91 -0.02 3.33 16 30 H 0.40 10.11 7.29 -213.32 -1.56 8.55 16 31 H 0.19 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 35 H 0.01 0.32 7.57 -2.39 -0.02 0.30 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -69.25 317.88 4.08 -65.16 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -0.52 Total: 12.32 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 5.25 Total: -19.69 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -2.46 Total: -102.49 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -69.25 4.08 -65.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755655473.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.333 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds