Wall clock time and date at job start Fri Apr 10 2020 14:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47394 * 2 1 4 4 C 1.50702 * 109.47155 * 120.00247 * 2 1 3 5 5 N 1.29704 * 120.00060 * 359.97438 * 4 2 1 6 6 N 1.28993 * 120.00100 * 179.72899 * 5 4 2 7 7 C 1.33454 * 120.00065 * 180.02562 * 6 5 4 8 8 C 1.41876 * 120.67427 * 180.02562 * 7 6 5 9 9 C 1.34880 * 119.26391 * 179.97438 * 8 7 6 10 10 N 1.36016 * 120.72395 * 0.02562 * 9 8 7 11 11 H 0.96991 * 119.27569 * 179.97438 * 10 9 8 12 12 C 1.36138 * 121.45815 * 359.97278 * 10 9 8 13 13 C 1.34947 * 120.67404 * 359.77870 * 12 10 9 14 14 Cl 1.73597 * 120.38613 * 180.24094 * 13 12 10 15 15 C 1.53000 * 109.46843 * 239.99844 * 2 1 3 16 16 C 1.50702 * 109.47245 * 60.00054 * 15 2 1 17 17 H 1.07997 * 119.99843 * 0.02562 * 16 15 2 18 18 C 1.37876 * 120.00259 * 179.97438 * 16 15 2 19 19 N 1.31518 * 119.99485 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00100 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47127 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47201 * 119.99821 * 20 18 16 23 23 H 1.48499 * 109.47080 * 239.99954 * 20 18 16 24 24 H 1.09008 * 109.47191 * 300.00243 * 1 2 3 25 25 H 1.09003 * 109.47341 * 59.99473 * 1 2 3 26 26 H 1.08996 * 109.47544 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47265 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46851 * 300.00270 * 3 2 1 29 29 H 1.09002 * 109.47575 * 59.99791 * 3 2 1 30 30 H 1.07997 * 119.99660 * 179.72833 * 4 2 1 31 31 H 1.08004 * 120.36991 * 359.95059 * 8 7 6 32 32 H 1.08001 * 119.63957 * 180.02562 * 9 8 7 33 33 H 1.07991 * 119.66211 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47192 * 180.02562 * 15 2 1 35 35 H 1.09004 * 109.47131 * 300.00165 * 15 2 1 36 36 H 0.97004 * 119.99485 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.1895 -1.2030 2.0845 6 7 1.6194 -1.8157 3.1350 7 6 0.7522 -2.3229 4.0135 8 6 1.2094 -2.9990 5.1740 9 6 0.3079 -3.5002 6.0432 10 7 -1.0263 -3.3635 5.8166 11 1 -1.6560 -3.7323 6.4554 12 6 -1.4973 -2.7204 4.7131 13 6 -0.6465 -2.1925 3.8083 14 17 -1.2554 -1.3686 2.4068 15 6 2.0399 -0.7213 -1.2492 16 6 1.5375 -0.0109 -2.4797 17 1 0.9170 0.8674 -2.3806 18 6 1.8710 -0.4817 -3.7320 19 7 2.6279 -1.5504 -3.8526 20 14 1.2489 0.3993 -5.2572 21 1 0.4233 1.5656 -4.8530 22 1 2.4041 0.8661 -6.0650 23 1 0.4241 -0.5338 -6.0660 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1299 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.0941 -0.8130 1.3991 31 1 2.2674 -3.1116 5.3592 32 1 0.6492 -4.0156 6.9288 33 1 -2.5627 -2.6282 4.5622 34 1 3.1299 -0.7217 -1.2491 35 1 1.6765 -1.7490 -1.2492 36 1 2.8622 -1.8819 -4.7336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755766612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:50 Heat of formation + Delta-G solvation = 57.935642 kcal Electronic energy + Delta-G solvation = -19348.482371 eV Core-core repulsion = 16280.089077 eV Total energy + Delta-G solvation = -3068.393294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.34837 -39.21319 -37.64457 -37.04019 -34.70659 -33.80207 -32.35557 -30.09381 -28.88289 -27.91463 -25.89489 -24.63866 -24.17128 -21.86749 -19.99719 -19.22955 -18.33713 -17.97324 -17.58570 -16.52497 -16.27195 -15.74852 -15.43775 -15.22369 -14.90543 -14.71915 -14.11480 -14.03862 -13.93567 -13.31880 -13.02616 -12.86335 -12.74119 -12.68171 -12.58764 -12.27772 -12.19417 -12.00730 -11.67615 -11.39502 -11.18816 -10.87454 -10.71866 -10.49125 -10.24263 -8.76564 -8.11834 -7.84376 -6.19055 -0.22297 0.30190 1.36970 1.43374 1.44008 1.57452 1.79736 2.24908 2.47056 3.02736 3.22689 3.34594 3.66716 4.03443 4.17965 4.19879 4.27676 4.45460 4.53259 4.64814 4.84514 5.01340 5.04269 5.15492 5.16269 5.30396 5.38162 5.46675 5.50467 5.58194 5.62456 5.77491 5.84429 5.92375 6.32345 6.34610 6.76349 6.94795 7.47949 8.19479 9.02614 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.032872 B = 0.003944 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.596545 B = 7097.985352 C = 7314.808793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.010 4.010 3 C -0.112 4.112 4 C 0.094 3.906 5 N -0.330 5.330 6 N -0.509 5.509 7 C 0.235 3.765 8 C -0.226 4.226 9 C 0.167 3.833 10 N -0.565 5.565 11 H 0.451 0.549 12 C 0.166 3.834 13 C -0.207 4.207 14 Cl -0.038 7.038 15 C 0.053 3.947 16 C -0.512 4.512 17 H 0.072 0.928 18 C -0.006 4.006 19 N -0.940 5.940 20 Si 0.963 3.037 21 H -0.257 1.257 22 H -0.280 1.280 23 H -0.283 1.283 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.151 0.849 32 H 0.233 0.767 33 H 0.206 0.794 34 H -0.012 1.012 35 H -0.025 1.025 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.961 -4.820 26.683 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.012 4.012 3 C -0.170 4.170 4 C -0.109 4.109 5 N -0.143 5.143 6 N -0.337 5.337 7 C 0.078 3.922 8 C -0.253 4.253 9 C 0.036 3.964 10 N -0.171 5.171 11 H 0.294 0.706 12 C 0.033 3.967 13 C -0.244 4.244 14 Cl -0.010 7.010 15 C 0.015 3.985 16 C -0.551 4.551 17 H 0.090 0.910 18 C -0.202 4.202 19 N -0.582 5.582 20 Si 0.788 3.212 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.209 1.209 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.250 0.750 33 H 0.223 0.777 34 H 0.006 0.994 35 H -0.007 1.007 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.945 -4.885 26.522 29.495 hybrid contribution 0.250 0.036 -1.344 1.368 sum -11.696 -4.849 25.178 28.182 Atomic orbital electron populations 1.21400 0.93992 1.00051 0.99478 1.19474 0.96284 0.95163 0.90314 1.21587 1.00261 0.94022 1.01154 1.26007 0.94232 0.96288 0.94423 1.70133 1.35616 1.07630 1.00900 1.71602 1.33866 1.22640 1.05584 1.20208 0.88505 0.90357 0.93164 1.20669 1.02113 1.07726 0.94773 1.22515 0.81334 0.93445 0.99068 1.41426 1.07937 1.47163 1.20617 0.70645 1.21997 1.00372 0.89296 0.85042 1.21381 0.94697 1.11671 0.96646 1.98410 1.86597 1.77025 1.38932 1.18892 0.94174 0.93569 0.91911 1.21614 1.30401 1.12058 0.90980 0.90980 1.25992 0.95581 0.95888 1.02737 1.70161 1.38858 1.25115 1.24019 0.85418 0.78151 0.78766 0.78854 1.18085 1.20569 1.20884 0.93204 0.93359 0.94968 0.93524 0.91754 0.92820 0.91831 0.83091 0.75028 0.77710 0.99376 1.00712 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -4.22 6.47 71.98 0.47 -3.75 16 2 C -0.01 -0.50 0.75 -52.93 -0.04 -0.54 16 3 C -0.11 -4.82 8.20 71.98 0.59 -4.23 16 4 C 0.09 4.57 9.62 88.42 0.85 5.42 16 5 N -0.33 -15.32 6.14 -49.67 -0.31 -15.62 16 6 N -0.51 -21.97 10.99 -51.11 -0.56 -22.53 16 7 C 0.23 7.49 6.74 40.72 0.27 7.76 16 8 C -0.23 -4.34 10.01 22.40 0.22 -4.12 16 9 C 0.17 0.88 11.17 83.27 0.93 1.81 16 10 N -0.56 -1.57 5.28 -194.87 -1.03 -2.60 16 11 H 0.45 -3.41 8.90 -92.71 -0.83 -4.23 16 12 C 0.17 1.96 10.95 83.27 0.91 2.88 16 13 C -0.21 -5.52 6.32 22.44 0.14 -5.38 16 14 Cl -0.04 -1.29 22.41 -2.72 -0.06 -1.35 16 15 C 0.05 3.08 4.02 29.85 0.12 3.20 16 16 C -0.51 -30.28 7.65 25.60 0.20 -30.08 16 17 H 0.07 4.02 5.68 -2.91 -0.02 4.01 16 18 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 19 N -0.94 -60.59 13.29 21.45 0.28 -60.30 16 20 Si 0.96 46.28 29.54 68.60 2.03 48.31 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 24 H 0.05 2.09 6.96 -2.38 -0.02 2.08 16 25 H 0.05 2.21 6.62 -2.39 -0.02 2.20 16 26 H 0.03 1.54 7.02 -2.39 -0.02 1.52 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 2.78 6.62 -2.39 -0.02 2.76 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.23 -1.53 8.06 -2.91 -0.02 -1.55 16 33 H 0.21 0.92 8.06 -2.91 -0.02 0.89 16 34 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 35 H -0.03 -1.68 8.14 -2.38 -0.02 -1.70 16 36 H 0.26 15.71 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -92.62 311.23 5.75 -86.87 By element: Atomic # 1 Polarization: -6.15 SS G_CDS: 0.27 Total: -5.88 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 5.13 Total: -26.89 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -1.61 Total: -101.06 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.06 Total: -1.35 kcal Total: -92.62 5.75 -86.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755766612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.802 kcal (2) G-P(sol) polarization free energy of solvation -92.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds