Wall clock time and date at job start Fri Apr 10 2020 14:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47209 * 2 1 4 4 C 1.50700 * 109.47188 * 120.00172 * 2 1 3 5 5 N 1.28018 * 119.99855 * 240.00239 * 4 2 1 6 6 N 1.40097 * 119.99748 * 180.02562 * 5 4 2 7 7 C 1.39019 * 119.99905 * 180.02562 * 6 5 4 8 8 C 1.39105 * 119.70224 * 179.97438 * 7 6 5 9 9 C 1.38451 * 119.07628 * 179.71995 * 8 7 6 10 10 Cl 1.73609 * 120.75814 * 180.22848 * 9 8 7 11 11 C 1.39023 * 118.48228 * 0.25433 * 9 8 7 12 12 C 1.38000 * 119.31926 * 0.02562 * 11 9 8 13 13 N 1.31965 * 120.87169 * 359.97438 * 12 11 9 14 14 C 1.53004 * 109.47510 * 240.00242 * 2 1 3 15 15 C 1.50695 * 109.47116 * 59.99480 * 14 2 1 16 16 H 1.08008 * 120.00098 * 0.02562 * 15 14 2 17 17 C 1.37874 * 120.00378 * 180.02562 * 15 14 2 18 18 N 1.31518 * 119.99830 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00396 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46955 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46926 * 120.00261 * 19 17 15 22 22 H 1.48496 * 109.46975 * 239.99950 * 19 17 15 23 23 H 1.08991 * 109.47366 * 299.99926 * 1 2 3 24 24 H 1.09004 * 109.46898 * 60.00161 * 1 2 3 25 25 H 1.08999 * 109.46974 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46746 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47060 * 300.00297 * 3 2 1 28 28 H 1.09004 * 109.46746 * 59.99979 * 3 2 1 29 29 H 1.07998 * 120.00027 * 59.99873 * 4 2 1 30 30 H 0.96997 * 120.00616 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.46262 * 0.02562 * 8 7 6 32 32 H 1.08004 * 120.34508 * 179.97438 * 11 9 8 33 33 H 1.08000 * 119.56532 * 179.97438 * 12 11 9 34 34 H 1.08991 * 109.47542 * 180.02562 * 14 2 1 35 35 H 1.09009 * 109.46723 * 300.00319 * 14 2 1 36 36 H 0.96998 * 120.00170 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7683 -0.0883 2.0731 6 7 3.2357 -0.7489 3.2167 7 6 4.0345 -0.0731 4.1321 8 6 4.4948 -0.7349 5.2658 9 6 5.2943 -0.0512 6.1659 10 17 5.8976 -0.8363 7.5920 11 6 5.6024 1.2785 5.9020 12 6 5.1060 1.8734 4.7600 13 7 4.3460 1.1968 3.9196 14 6 2.0401 -0.7212 -1.2493 15 6 1.5377 -0.0109 -2.4797 16 1 0.9170 0.8675 -2.3806 17 6 1.8704 -0.4821 -3.7320 18 7 2.6258 -1.5519 -3.8527 19 14 1.2482 0.3989 -5.2572 20 1 0.4245 1.5665 -4.8530 21 1 2.4036 0.8647 -6.0656 22 1 0.4226 -0.5340 -6.0654 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.7714 -1.7444 1.4013 30 1 3.0015 -1.6776 3.3702 31 1 4.2362 -1.7692 5.4389 32 1 6.2232 1.8405 6.5840 33 1 5.3425 2.9063 4.5513 34 1 3.1300 -0.7216 -1.2490 35 1 1.6767 -1.7489 -1.2493 36 1 2.8596 -1.8837 -4.7337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777907517.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:44 Heat of formation + Delta-G solvation = 44.563419 kcal Electronic energy + Delta-G solvation = -18733.982551 eV Core-core repulsion = 15665.009394 eV Total energy + Delta-G solvation = -3068.973157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.24584 -39.26674 -37.82082 -37.06667 -34.60603 -33.27097 -33.09075 -29.96011 -28.88096 -27.89024 -25.85224 -24.80141 -24.10960 -22.71045 -19.87493 -18.90728 -18.34453 -18.12757 -17.12303 -16.76011 -16.49863 -15.84163 -15.78463 -15.15455 -14.90384 -14.68461 -14.50348 -13.98750 -13.87281 -13.30699 -13.13692 -12.92284 -12.71018 -12.66237 -12.54188 -12.28517 -12.09727 -12.02082 -11.68503 -11.29680 -11.11643 -10.83429 -10.69089 -10.51364 -10.48108 -10.42957 -8.81178 -8.11341 -6.18034 0.06722 0.11717 0.82774 1.34348 1.44509 1.46594 1.57957 1.63734 2.47917 2.80780 3.23805 3.31837 3.85243 3.88265 3.94193 4.00969 4.28377 4.39812 4.44275 4.55515 4.63315 4.82884 4.99395 5.01049 5.08362 5.18278 5.24596 5.43792 5.47447 5.53557 5.56856 5.59645 5.83122 5.92406 6.03392 6.33808 6.87818 6.96238 7.43176 7.49364 9.01178 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.037554 B = 0.002862 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.406574 B = 9781.227854 C = 9841.071023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.006 4.006 3 C -0.105 4.105 4 C 0.086 3.914 5 N -0.250 5.250 6 N -0.578 5.578 7 C 0.413 3.587 8 C -0.227 4.227 9 C 0.041 3.959 10 Cl -0.043 7.043 11 C -0.214 4.214 12 C 0.151 3.849 13 N -0.543 5.543 14 C 0.048 3.952 15 C -0.512 4.512 16 H 0.072 0.928 17 C -0.002 4.002 18 N -0.938 5.938 19 Si 0.955 3.045 20 H -0.258 1.258 21 H -0.287 1.287 22 H -0.282 1.282 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.030 0.970 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.118 0.882 30 H 0.404 0.596 31 H 0.159 0.841 32 H 0.171 0.829 33 H 0.191 0.809 34 H -0.019 1.019 35 H 0.001 0.999 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 2.818 21.724 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.009 4.009 3 C -0.162 4.162 4 C -0.130 4.130 5 N -0.052 5.052 6 N -0.302 5.302 7 C 0.178 3.822 8 C -0.253 4.253 9 C 0.006 3.994 10 Cl -0.014 7.014 11 C -0.236 4.236 12 C -0.007 4.007 13 N -0.259 5.259 14 C 0.010 3.990 15 C -0.550 4.550 16 H 0.090 0.910 17 C -0.199 4.199 18 N -0.579 5.579 19 Si 0.781 3.219 20 H -0.182 1.182 21 H -0.213 1.213 22 H -0.208 1.208 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.135 0.865 30 H 0.245 0.755 31 H 0.176 0.824 32 H 0.188 0.812 33 H 0.207 0.793 34 H 0.000 1.000 35 H 0.019 0.981 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.221 3.934 21.220 21.821 hybrid contribution 0.009 -1.806 -0.300 1.831 sum 3.230 2.128 20.920 21.275 Atomic orbital electron populations 1.21640 0.92196 1.02003 1.01662 1.19533 0.96544 0.95264 0.89560 1.21449 0.99491 0.94852 1.00405 1.26315 0.93941 0.98387 0.94309 1.74355 1.10499 1.25226 0.95123 1.45478 1.52489 1.12661 1.19554 1.18041 0.88761 0.88843 0.86510 1.21230 1.05758 1.03082 0.95275 1.20997 0.95560 0.93585 0.89234 1.98395 1.86120 1.80337 1.36579 1.22144 1.06264 0.93918 1.01302 1.23090 0.89195 1.00496 0.87962 1.67338 1.17702 1.07413 1.33472 1.18950 0.94033 0.94687 0.91374 1.21616 1.30337 1.12034 0.91017 0.91017 1.25877 0.95653 0.95853 1.02495 1.70109 1.38850 1.24931 1.24004 0.85531 0.78028 0.78928 0.79393 1.18179 1.21313 1.20775 0.92271 0.91883 0.92497 0.95103 0.92814 0.92900 0.86460 0.75452 0.82352 0.81193 0.79264 1.00023 0.98084 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.20 71.98 0.59 -3.39 16 2 C -0.01 -0.25 0.75 -52.92 -0.04 -0.29 16 3 C -0.10 -4.13 7.45 71.98 0.54 -3.59 16 4 C 0.09 2.97 9.56 88.66 0.85 3.82 16 5 N -0.25 -8.80 9.74 -50.46 -0.49 -9.29 16 6 N -0.58 -16.68 6.41 -55.40 -0.36 -17.04 16 7 C 0.41 11.47 7.59 133.03 1.01 12.48 16 8 C -0.23 -4.85 9.76 22.53 0.22 -4.63 16 9 C 0.04 0.78 6.37 22.51 0.14 0.93 16 10 Cl -0.04 -0.69 29.02 -2.72 -0.08 -0.77 16 11 C -0.21 -3.68 9.93 22.40 0.22 -3.46 16 12 C 0.15 3.19 11.17 84.62 0.95 4.14 16 13 N -0.54 -16.16 9.91 -193.25 -1.92 -18.07 16 14 C 0.05 2.39 4.02 29.85 0.12 2.51 16 15 C -0.51 -27.26 7.65 25.60 0.20 -27.07 16 16 H 0.07 3.62 5.68 -2.91 -0.02 3.61 16 17 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 18 N -0.94 -56.07 13.29 21.45 0.28 -55.79 16 19 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 2.28 6.62 -2.38 -0.02 2.27 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.03 1.30 8.06 -2.39 -0.02 1.28 16 27 H 0.05 2.17 6.62 -2.38 -0.02 2.15 16 28 H 0.05 1.90 8.06 -2.38 -0.02 1.89 16 29 H 0.12 3.47 8.00 -2.91 -0.02 3.45 16 30 H 0.40 9.07 8.63 -213.33 -1.84 7.23 16 31 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.19 2.80 8.06 -2.91 -0.02 2.77 16 34 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 35 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -66.69 323.86 3.98 -62.72 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -0.75 Total: 11.00 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 5.25 Total: -18.19 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -2.48 Total: -100.19 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -66.69 3.98 -62.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777907517.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.279 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds