Wall clock time and date at job start Fri Apr 10 2020 14:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.40316 * 126.64705 * 59.68617 * 4 2 1 6 6 C 1.35165 * 107.12577 * 179.83570 * 5 4 2 7 7 O 1.33913 * 108.78198 * 0.43456 * 6 5 4 8 8 C 1.34939 * 109.37895 * 359.72227 * 7 6 5 9 9 C 1.46469 * 125.99487 * 180.02562 * 8 7 6 10 10 O 1.21619 * 120.00286 * 179.97438 * 9 8 7 11 11 O 1.34905 * 119.99893 * 359.97438 * 9 8 7 12 12 C 1.45198 * 116.99979 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47241 * 179.97438 * 12 11 9 14 14 O 1.21287 * 120.00071 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00079 * 179.97438 * 13 12 11 16 16 C 1.37088 * 119.99957 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00263 * 359.97438 * 16 15 13 18 18 C 1.38958 * 120.00229 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99760 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00281 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47157 * 60.00243 * 20 18 16 22 22 H 1.48500 * 109.47005 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46967 * 300.00103 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.08004 * 126.43142 * 0.02562 * 5 4 2 32 32 H 1.07997 * 125.61003 * 180.12008 * 6 5 4 33 33 H 1.09003 * 109.47324 * 299.99618 * 12 11 9 34 34 H 1.08999 * 109.47282 * 59.99817 * 12 11 9 35 35 H 0.97010 * 120.00012 * 0.02562 * 15 13 12 36 36 H 0.96990 * 120.00460 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7759 -0.3584 -2.5642 6 6 2.4185 -1.2565 -3.3435 7 8 3.0440 -2.1410 -2.5563 8 6 2.8210 -1.8257 -1.2633 9 6 3.3348 -2.5514 -0.0994 10 8 3.0651 -2.1692 1.0232 11 8 4.1073 -3.6438 -0.2726 12 6 4.5806 -4.3132 0.9257 13 6 5.4209 -5.5026 0.5381 14 8 5.6034 -5.7604 -0.6329 15 7 5.9705 -6.2792 1.4926 16 6 6.7354 -7.3609 1.1400 17 1 6.8972 -7.5910 0.0973 18 6 7.3025 -8.1614 2.1241 19 7 7.1053 -7.8817 3.3929 20 14 8.3441 -9.6356 1.6436 21 1 9.5057 -9.1798 0.8386 22 1 8.8297 -10.3192 2.8693 23 1 7.5255 -10.5795 0.8411 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.1797 0.4756 -2.9042 32 1 2.4224 -1.2630 -4.4235 33 1 5.1809 -3.6207 1.5158 34 1 3.7275 -4.6483 1.5157 35 1 5.8249 -6.0728 2.4293 36 1 7.5014 -8.4402 4.0799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792625485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:00 Heat of formation + Delta-G solvation = -113.996864 kcal Electronic energy + Delta-G solvation = -21316.136332 eV Core-core repulsion = 17767.285570 eV Total energy + Delta-G solvation = -3548.850763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.90765 -40.10322 -38.13755 -36.71051 -35.78291 -33.99260 -32.00726 -31.38432 -30.37953 -28.28104 -27.30491 -24.89775 -23.73125 -22.85738 -20.99907 -19.83370 -19.52643 -18.24109 -18.05613 -16.77895 -16.72433 -16.15440 -15.80255 -15.60573 -14.81709 -14.52899 -14.07975 -13.98480 -13.94932 -13.49348 -13.38767 -12.99016 -12.73467 -12.40958 -12.34354 -12.07503 -11.61519 -11.50046 -11.42485 -11.30742 -11.10761 -10.48025 -10.46992 -10.31075 -10.24907 -9.91768 -9.58763 -8.86285 -8.51754 -8.07389 -6.49008 -3.91003 0.77894 2.10835 2.31772 2.85542 2.99059 3.16475 3.23611 3.28848 3.74555 4.12312 4.35965 4.48179 4.62189 4.95259 5.02236 5.02673 5.15570 5.16581 5.32172 5.39881 5.44774 5.48858 5.64126 5.68097 5.69985 5.76473 5.88704 6.02834 6.07466 6.10368 6.19090 6.52124 6.75132 7.48704 7.72993 7.95211 8.49542 9.07980 9.39944 9.90206 10.68212 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.036153 B = 0.003191 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.304423 B = 8772.276041 C = 9355.515169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C -0.138 4.138 4 C -0.068 4.068 5 C -0.226 4.226 6 C 0.007 3.993 7 O -0.143 6.143 8 C -0.061 4.061 9 C 0.548 3.452 10 O -0.491 6.491 11 O -0.314 6.314 12 C 0.060 3.940 13 C 0.438 3.562 14 O -0.574 6.574 15 N -0.552 5.552 16 C -0.303 4.303 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.898 5.898 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.110 0.890 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.157 0.843 32 H 0.213 0.787 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.395 0.605 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.827 16.714 -6.808 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.196 4.196 4 C -0.070 4.070 5 C -0.245 4.245 6 C -0.064 4.064 7 O -0.037 6.037 8 C -0.111 4.111 9 C 0.393 3.607 10 O -0.382 6.382 11 O -0.228 6.228 12 C -0.017 4.017 13 C 0.223 3.777 14 O -0.458 6.458 15 N -0.189 5.189 16 C -0.432 4.432 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.538 5.538 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.197 1.197 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.175 0.825 32 H 0.229 0.771 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.229 0.771 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.496 16.244 -7.148 21.146 hybrid contribution 0.330 -0.466 0.413 0.705 sum -11.166 15.778 -6.734 20.469 Atomic orbital electron populations 1.21774 0.93949 1.02067 1.01789 1.20062 0.96022 0.95998 0.95243 1.21773 1.01320 0.94696 1.01788 1.20592 0.96255 0.93680 0.96440 1.21637 1.07093 1.03907 0.91847 1.24506 0.95147 0.89450 0.97299 1.84244 1.57927 1.46174 1.15358 1.20559 1.08541 1.00200 0.81803 1.19267 0.76165 0.78935 0.86309 1.90850 1.57116 1.66935 1.23293 1.86727 1.60475 1.38323 1.37256 1.22843 0.99324 0.94837 0.84696 1.19281 0.85838 0.85589 0.87029 1.90574 1.64091 1.73120 1.17975 1.41680 1.44406 1.24968 1.07877 1.19685 1.25572 1.02889 0.95071 0.87656 1.25309 0.98191 0.99508 0.94697 1.69603 1.44772 1.40020 0.99413 0.85853 0.79829 0.80462 0.77722 1.19750 1.20864 1.19744 0.92549 0.92693 0.92041 0.87221 0.92694 0.92042 0.92550 0.82525 0.77099 0.89175 0.89184 0.77126 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.09 37.16 0.34 -0.90 16 2 C -0.06 -0.60 3.19 -91.77 -0.29 -0.89 16 3 C -0.14 -1.24 9.10 37.16 0.34 -0.90 16 4 C -0.07 -0.83 4.87 -104.42 -0.51 -1.34 16 5 C -0.23 -2.14 10.41 -39.89 -0.42 -2.55 16 6 C 0.01 0.06 12.08 29.64 0.36 0.42 16 7 O -0.14 -2.06 10.67 4.74 0.05 -2.01 16 8 C -0.06 -0.92 7.18 -36.85 -0.26 -1.19 16 9 C 0.55 9.56 7.93 34.05 0.27 9.83 16 10 O -0.49 -8.58 14.20 -19.36 -0.27 -8.85 16 11 O -0.31 -6.31 9.77 -48.38 -0.47 -6.79 16 12 C 0.06 1.18 5.96 36.01 0.21 1.39 16 13 C 0.44 10.79 7.86 -10.98 -0.09 10.70 16 14 O -0.57 -16.39 16.08 -14.11 -0.23 -16.61 16 15 N -0.55 -14.09 5.29 -10.96 -0.06 -14.15 16 16 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 17 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 18 C 0.03 0.67 5.50 -17.46 -0.10 0.58 16 19 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 20 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.42 8.05 -51.93 -0.42 0.00 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.11 1.44 5.48 -51.93 -0.28 1.15 16 28 H 0.05 0.42 8.06 -51.93 -0.42 0.00 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.16 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.21 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 35 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 322.68 15.07 4.86 4.86 Total: -1.00 -33.03 322.68 -5.04 -38.07 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.34 Total: 6.53 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.29 Total: 6.57 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.67 Total: -37.59 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.92 Total: -34.26 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.03 -5.04 -38.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792625485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.926 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds