Wall clock time and date at job start Fri Apr 10 2020 14:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.40316 * 126.64705 * 59.68617 * 4 2 1 6 6 C 1.35165 * 107.12577 * 179.83570 * 5 4 2 7 7 O 1.33913 * 108.78198 * 0.43456 * 6 5 4 8 8 C 1.34939 * 109.37895 * 359.72227 * 7 6 5 9 9 C 1.46469 * 125.99487 * 180.02562 * 8 7 6 10 10 O 1.21619 * 120.00286 * 179.97438 * 9 8 7 11 11 O 1.34905 * 119.99893 * 359.97438 * 9 8 7 12 12 C 1.45198 * 116.99979 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47241 * 179.97438 * 12 11 9 14 14 O 1.21287 * 120.00071 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00079 * 179.97438 * 13 12 11 16 16 C 1.37088 * 119.99957 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00263 * 359.97438 * 16 15 13 18 18 C 1.38958 * 120.00229 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99760 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00281 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47157 * 60.00243 * 20 18 16 22 22 H 1.48500 * 109.47005 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46967 * 300.00103 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.08004 * 126.43142 * 0.02562 * 5 4 2 32 32 H 1.07997 * 125.61003 * 180.12008 * 6 5 4 33 33 H 1.09003 * 109.47324 * 299.99618 * 12 11 9 34 34 H 1.08999 * 109.47282 * 59.99817 * 12 11 9 35 35 H 0.97010 * 120.00012 * 0.02562 * 15 13 12 36 36 H 0.96990 * 120.00460 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7759 -0.3584 -2.5642 6 6 2.4185 -1.2565 -3.3435 7 8 3.0440 -2.1410 -2.5563 8 6 2.8210 -1.8257 -1.2633 9 6 3.3348 -2.5514 -0.0994 10 8 3.0651 -2.1692 1.0232 11 8 4.1073 -3.6438 -0.2726 12 6 4.5806 -4.3132 0.9257 13 6 5.4209 -5.5026 0.5381 14 8 5.6034 -5.7604 -0.6329 15 7 5.9705 -6.2792 1.4926 16 6 6.7354 -7.3609 1.1400 17 1 6.8972 -7.5910 0.0973 18 6 7.3025 -8.1614 2.1241 19 7 7.1053 -7.8817 3.3929 20 14 8.3441 -9.6356 1.6436 21 1 9.5057 -9.1798 0.8386 22 1 8.8297 -10.3192 2.8693 23 1 7.5255 -10.5795 0.8411 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.1797 0.4756 -2.9042 32 1 2.4224 -1.2630 -4.4235 33 1 5.1809 -3.6207 1.5158 34 1 3.7275 -4.6483 1.5157 35 1 5.8249 -6.0728 2.4293 36 1 7.5014 -8.4402 4.0799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792625485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:00 Heat of formation + Delta-G solvation = -135.284186 kcal Electronic energy + Delta-G solvation = -21317.059420 eV Core-core repulsion = 17767.285570 eV Total energy + Delta-G solvation = -3549.773850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.83812 -41.51673 -40.05082 -37.93315 -36.89242 -36.06586 -33.45550 -32.83412 -31.47565 -29.85839 -27.99438 -26.75499 -24.97658 -23.71376 -22.05941 -21.49716 -20.74475 -20.10342 -19.41214 -18.07802 -18.04802 -17.68578 -17.02115 -16.96440 -16.49084 -15.83120 -15.65491 -15.62260 -14.91486 -14.76292 -14.19669 -14.14088 -13.99666 -13.77197 -13.57057 -13.51003 -13.03479 -12.95338 -12.53270 -12.48697 -12.18420 -12.16962 -12.12935 -11.98398 -11.60198 -11.29530 -10.74483 -10.56464 -10.14761 -9.79345 -8.54329 -6.05433 -0.28421 1.10064 1.27312 1.36065 1.42155 1.53630 1.70346 1.83914 1.93392 2.29716 3.02002 3.10794 3.51221 3.62748 3.74488 3.97314 4.09809 4.17515 4.26800 4.27783 4.35574 4.43204 4.70148 4.82031 4.82820 4.97409 5.00720 5.06868 5.20432 5.34583 5.34801 5.37438 5.47600 5.83870 5.87533 6.39450 6.49750 7.00028 7.36046 7.90092 8.62502 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.036153 B = 0.003191 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.304423 B = 8772.276041 C = 9355.515169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.050 4.050 5 C -0.226 4.226 6 C 0.026 3.974 7 O -0.175 6.175 8 C -0.116 4.116 9 C 0.546 3.454 10 O -0.502 6.502 11 O -0.341 6.341 12 C 0.071 3.929 13 C 0.434 3.566 14 O -0.620 6.620 15 N -0.554 5.554 16 C -0.342 4.342 17 H 0.084 0.916 18 C -0.007 4.007 19 N -0.914 5.914 20 Si 0.999 3.001 21 H -0.270 1.270 22 H -0.268 1.268 23 H -0.270 1.270 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.195 0.805 32 H 0.259 0.741 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.401 0.599 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 18.172 -7.603 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.080 4.080 3 C -0.191 4.191 4 C -0.052 4.052 5 C -0.244 4.244 6 C -0.044 4.044 7 O -0.070 6.070 8 C -0.165 4.165 9 C 0.392 3.608 10 O -0.394 6.394 11 O -0.256 6.256 12 C -0.006 4.006 13 C 0.221 3.779 14 O -0.506 6.506 15 N -0.192 5.192 16 C -0.471 4.471 17 H 0.102 0.898 18 C -0.208 4.208 19 N -0.554 5.554 20 Si 0.822 3.178 21 H -0.195 1.195 22 H -0.192 1.192 23 H -0.195 1.195 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.212 0.788 32 H 0.275 0.725 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.236 0.764 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.549 17.728 -7.900 23.112 hybrid contribution 0.575 -0.810 0.594 1.157 sum -11.974 16.918 -7.306 21.976 Atomic orbital electron populations 1.21755 0.92148 1.01716 1.03494 1.20139 0.97471 0.96785 0.93585 1.21754 1.00442 0.93423 1.03490 1.21013 0.93916 0.91975 0.98324 1.22057 1.07354 1.04908 0.90089 1.25592 0.92368 0.87478 0.98931 1.84217 1.59347 1.47996 1.15464 1.20422 1.12107 1.02235 0.81736 1.19655 0.75531 0.78132 0.87436 1.90827 1.57630 1.67073 1.23878 1.86710 1.61635 1.39749 1.37498 1.22631 0.99611 0.93343 0.84970 1.20059 0.85350 0.86309 0.86173 1.90531 1.65709 1.74567 1.19838 1.41703 1.44304 1.24813 1.08331 1.19703 1.27901 1.04835 0.94641 0.89834 1.26142 0.98553 1.01633 0.94464 1.69660 1.44793 1.40834 1.00072 0.84905 0.78046 0.76940 0.77954 1.19482 1.19181 1.19472 0.93922 0.90561 0.90795 0.90055 0.90568 0.90794 0.93926 0.78784 0.72544 0.86999 0.87009 0.76432 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.09 71.98 0.65 -1.46 16 2 C -0.06 -1.27 3.19 -11.54 -0.04 -1.30 16 3 C -0.13 -2.11 9.10 71.98 0.65 -1.46 16 4 C -0.05 -1.17 4.87 -19.74 -0.10 -1.26 16 5 C -0.23 -3.53 10.41 22.07 0.23 -3.30 16 6 C 0.03 0.42 12.08 67.11 0.81 1.23 16 7 O -0.17 -5.00 10.67 -4.90 -0.05 -5.05 16 8 C -0.12 -3.57 7.18 24.04 0.17 -3.40 16 9 C 0.55 19.81 7.93 69.97 0.55 20.37 16 10 O -0.50 -18.17 14.20 19.45 0.28 -17.90 16 11 O -0.34 -14.31 9.77 -51.20 -0.50 -14.81 16 12 C 0.07 2.86 5.96 71.24 0.42 3.29 16 13 C 0.43 22.20 7.86 87.66 0.69 22.89 16 14 O -0.62 -37.02 16.08 15.75 0.25 -36.77 16 15 N -0.55 -29.17 5.29 -306.99 -1.62 -30.79 16 16 C -0.34 -19.58 9.68 84.04 0.81 -18.77 16 17 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 18 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 19 N -0.91 -48.93 13.05 21.67 0.28 -48.65 16 20 Si 1.00 42.47 29.55 68.60 2.03 44.50 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 24 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.08 0.88 8.05 -2.39 -0.02 0.86 16 26 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.08 2.17 5.48 -2.39 -0.01 2.15 16 28 H 0.08 0.88 8.06 -2.39 -0.02 0.86 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.26 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 34 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 35 H 0.40 19.73 7.90 -92.70 -0.73 19.00 16 36 H 0.28 14.06 8.31 -92.72 -0.77 13.29 16 Total: -1.00 -74.69 322.68 6.38 -68.30 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.38 Total: 24.22 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.34 Total: 16.94 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -1.34 Total: -79.44 kcal Atomic # 8 Polarization: -74.50 SS G_CDS: -0.02 Total: -74.52 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -74.69 6.38 -68.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792625485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.981 kcal (2) G-P(sol) polarization free energy of solvation -74.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds