Wall clock time and date at job start Fri Apr 10 2020 14:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47412 * 2 1 4 4 C 1.53001 * 109.46967 * 239.99715 * 2 1 3 5 5 C 1.50696 * 109.46913 * 120.00102 * 2 1 3 6 6 N 1.29307 * 120.00057 * 359.97438 * 5 2 1 7 7 N 1.37256 * 120.00069 * 179.97438 * 5 2 1 8 8 C 1.38705 * 120.00200 * 179.97438 * 7 5 2 9 9 N 1.32716 * 119.43022 * 0.02562 * 8 7 5 10 10 C 1.31443 * 121.75150 * 179.97438 * 9 8 7 11 11 C 1.40811 * 120.38550 * 0.02562 * 10 9 8 12 12 C 1.41180 * 120.57465 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00309 * 335.71616 * 12 11 10 14 14 C 1.39885 * 120.00257 * 155.71236 * 12 11 10 15 15 N 1.30895 * 119.99996 * 343.28010 * 14 12 11 16 16 Si 1.86800 * 120.00311 * 163.27639 * 14 12 11 17 17 H 1.48500 * 109.47196 * 90.00055 * 16 14 12 18 18 H 1.48498 * 109.47428 * 210.00067 * 16 14 12 19 19 H 1.48505 * 109.46992 * 330.00175 * 16 14 12 20 20 C 1.41269 * 118.85507 * 359.97438 * 11 10 9 21 21 C 1.36709 * 118.39281 * 359.97438 * 20 11 10 22 22 Cl 1.73602 * 120.26151 * 179.97438 * 21 20 11 23 23 H 1.09000 * 109.47452 * 300.00581 * 1 2 3 24 24 H 1.09005 * 109.46982 * 59.99751 * 1 2 3 25 25 H 1.09001 * 109.47446 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46643 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46817 * 299.99808 * 3 2 1 28 28 H 1.09000 * 109.46646 * 59.99717 * 3 2 1 29 29 H 1.09001 * 109.47322 * 300.00425 * 4 2 1 30 30 H 1.09005 * 109.46834 * 60.00443 * 4 2 1 31 31 H 1.09001 * 109.46969 * 180.02562 * 4 2 1 32 32 H 0.97000 * 120.00076 * 359.97438 * 6 5 2 33 33 H 0.96996 * 120.00022 * 0.02562 * 7 5 2 34 34 H 1.08004 * 119.80629 * 180.27284 * 10 9 8 35 35 H 0.96993 * 119.99861 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.80418 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2304 6 7 1.1920 -1.2014 2.0818 7 7 3.3817 -0.8363 1.4474 8 6 3.8440 -1.4897 2.5802 9 7 2.9716 -1.9894 3.4466 10 6 3.3592 -2.6174 4.5343 11 6 4.7299 -2.7786 4.8135 12 6 5.1506 -3.4529 5.9803 13 1 4.4977 -3.5050 6.8391 14 6 6.4131 -4.0536 6.0243 15 7 7.0680 -4.2825 4.9143 16 14 7.1647 -4.5291 7.6670 17 1 6.7662 -5.9178 8.0102 18 1 8.6446 -4.4468 7.5767 19 1 6.6806 -3.6006 8.7201 20 6 5.6768 -2.2549 3.9054 21 6 5.2201 -1.6115 2.7889 22 17 6.3412 -0.9488 1.6410 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4423 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7490 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 0.2383 -1.1121 1.9287 33 1 4.0121 -0.4677 0.8090 34 1 2.6220 -3.0155 5.2158 35 1 7.9432 -4.6994 4.9447 36 1 6.7360 -2.3602 4.0886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155181225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:52 Heat of formation + Delta-G solvation = 46.143150 kcal Electronic energy + Delta-G solvation = -19683.031424 eV Core-core repulsion = 16614.126770 eV Total energy + Delta-G solvation = -3068.904655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.33653 -38.03407 -35.63645 -34.88019 -33.48061 -31.72395 -30.44065 -29.23875 -27.31463 -27.11308 -25.25720 -22.87904 -21.84753 -20.85845 -18.74176 -17.44187 -17.17686 -15.74827 -15.21595 -15.04306 -14.44955 -14.31287 -14.01795 -13.75450 -13.47545 -13.09925 -12.49082 -12.44046 -12.21730 -11.81002 -11.78060 -11.64359 -11.53513 -11.39324 -11.19695 -11.01411 -10.93450 -10.81397 -10.58692 -10.41843 -9.89551 -9.39153 -8.62561 -8.54343 -8.12629 -7.57860 -7.00334 -6.76355 -4.37961 2.40135 2.83552 3.03558 3.05122 3.10514 3.12370 3.48254 3.79570 3.87178 4.58586 4.66997 4.77834 4.92069 5.30874 5.48447 5.54014 5.59674 5.66933 5.76333 5.78040 5.86957 6.00044 6.05409 6.11719 6.18782 6.23371 6.59356 6.68073 6.98656 7.06492 7.18083 7.60087 7.68529 7.98729 8.20084 8.41356 8.65701 8.67443 9.22056 9.70213 10.06704 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.029167 B = 0.004694 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.774135 B = 5963.965128 C = 6663.897011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.137 4.137 5 C 0.396 3.604 6 N -0.700 5.700 7 N -0.633 5.633 8 C 0.240 3.760 9 N -0.411 5.411 10 C 0.002 3.998 11 C 0.051 3.949 12 C -0.446 4.446 13 H 0.085 0.915 14 C 0.073 3.927 15 N -0.792 5.792 16 Si 0.912 3.088 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.259 1.259 20 C -0.106 4.106 21 C -0.082 4.082 22 Cl -0.118 7.118 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.324 0.676 33 H 0.408 0.592 34 H 0.134 0.866 35 H 0.284 0.716 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 6.843 -8.469 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.195 4.195 4 C -0.195 4.195 5 C 0.110 3.890 6 N -0.327 5.327 7 N -0.266 5.266 8 C 0.010 3.990 9 N -0.122 5.122 10 C -0.160 4.160 11 C 0.045 3.955 12 C -0.476 4.476 13 H 0.103 0.897 14 C -0.145 4.145 15 N -0.417 5.417 16 Si 0.736 3.264 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.133 4.133 21 C -0.114 4.114 22 Cl -0.090 7.090 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.245 0.755 34 H 0.152 0.848 35 H 0.095 0.905 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.986 6.323 -7.857 11.250 hybrid contribution 1.238 0.193 -0.322 1.294 sum -3.747 6.516 -8.179 11.109 Atomic orbital electron populations 1.21898 0.93486 1.02355 1.02354 1.20598 0.96393 0.96279 0.94857 1.21825 1.01336 0.94354 1.01994 1.21829 1.01355 1.00429 0.95930 1.21123 0.86258 0.91796 0.89788 1.69577 1.06109 1.26395 1.30598 1.41182 1.03500 1.58758 1.23190 1.17407 0.86009 1.04240 0.91372 1.67297 1.34604 1.08270 1.02066 1.22616 0.93798 1.04112 0.95456 1.18473 0.91438 0.92076 0.93477 1.19430 0.99912 1.28797 0.99460 0.89715 1.25957 0.96724 0.93708 0.98135 1.69795 1.13058 1.30589 1.28288 0.86245 0.78432 0.79692 0.82057 1.19371 1.20049 1.18320 1.21240 1.01496 0.97574 0.92986 1.21068 0.87562 1.07401 0.95324 1.98243 1.63523 1.85623 1.61625 0.92058 0.91712 0.92046 0.92299 0.92209 0.92286 0.92267 0.92203 0.92289 0.85886 0.75498 0.84826 0.90537 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 7.22 37.16 0.27 -1.26 16 2 C -0.08 -0.94 0.89 -155.66 -0.14 -1.08 16 3 C -0.14 -1.50 8.38 37.16 0.31 -1.19 16 4 C -0.14 -1.53 8.38 37.16 0.31 -1.22 16 5 C 0.40 6.88 6.44 -154.34 -0.99 5.89 16 6 N -0.70 -13.67 11.19 32.94 0.37 -13.30 16 7 N -0.63 -12.03 5.20 -9.31 -0.05 -12.07 16 8 C 0.24 5.55 7.44 -154.82 -1.15 4.40 16 9 N -0.41 -10.16 7.63 -11.70 -0.09 -10.25 16 10 C 0.00 0.06 10.97 -16.75 -0.18 -0.13 16 11 C 0.05 1.32 5.59 -106.66 -0.60 0.72 16 12 C -0.45 -11.24 9.07 -37.85 -0.34 -11.59 16 13 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 14 C 0.07 1.75 5.19 -17.33 -0.09 1.66 16 15 N -0.79 -19.68 10.91 55.54 0.61 -19.07 16 16 Si 0.91 17.93 29.59 -169.99 -5.03 12.90 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 20 C -0.11 -2.68 8.52 -38.98 -0.33 -3.01 16 21 C -0.08 -1.88 6.32 -39.58 -0.25 -2.13 16 22 Cl -0.12 -2.26 27.56 -51.86 -1.43 -3.69 16 23 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 26 H 0.06 0.65 7.60 -51.93 -0.39 0.26 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.66 7.59 -51.93 -0.39 0.27 16 32 H 0.32 5.48 6.30 -40.82 -0.26 5.22 16 33 H 0.41 6.82 6.25 -40.82 -0.26 6.57 16 34 H 0.13 3.12 8.06 -52.48 -0.42 2.70 16 35 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 36 H 0.14 3.61 6.20 -52.49 -0.33 3.29 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -28.08 312.06 -8.62 -36.69 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -4.51 Total: 13.04 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -3.19 Total: -8.95 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.84 Total: -54.69 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.43 Total: -3.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.08 -8.62 -36.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155181225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.835 kcal (2) G-P(sol) polarization free energy of solvation -28.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds