Wall clock time and date at job start Fri Apr 10 2020 14:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46688 * 2 1 4 4 C 1.50704 * 109.46793 * 179.97438 * 3 2 1 5 5 C 1.36484 * 126.50527 * 269.99915 * 4 3 2 6 6 C 1.46587 * 125.84890 * 0.03234 * 5 4 3 7 7 O 1.21637 * 120.00204 * 0.02562 * 6 5 4 8 8 O 1.34878 * 119.99641 * 180.02562 * 6 5 4 9 9 C 1.34857 * 116.99886 * 180.02562 * 8 6 5 10 10 H 1.07999 * 119.99565 * 359.97438 * 9 8 6 11 11 C 1.38781 * 120.00022 * 179.97438 * 9 8 6 12 12 N 1.31439 * 120.00108 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00006 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47278 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46950 * 120.00025 * 13 11 9 16 16 H 1.48501 * 109.47057 * 239.99701 * 13 11 9 17 17 N 1.37839 * 108.29578 * 179.76649 * 5 4 3 18 18 H 0.96996 * 125.38669 * 180.26389 * 17 5 4 19 19 C 1.34225 * 109.22278 * 0.39311 * 17 5 4 20 20 C 1.50703 * 125.79313 * 179.87301 * 19 17 5 21 21 C 1.38332 * 108.41465 * 359.60540 * 19 17 5 22 22 C 1.47256 * 126.46765 * 180.23832 * 21 19 17 23 23 O 1.21526 * 119.99558 * 90.02558 * 22 21 19 24 24 O 1.34764 * 120.00152 * 270.03126 * 22 21 19 25 25 H 1.09002 * 109.46979 * 60.00319 * 1 2 3 26 26 H 1.09002 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47847 * 300.00075 * 1 2 3 28 28 H 1.08999 * 109.47000 * 239.99739 * 2 1 3 29 29 H 1.08998 * 109.46520 * 119.99525 * 2 1 3 30 30 H 1.08999 * 109.47613 * 60.00114 * 3 2 1 31 31 H 1.09002 * 109.47150 * 299.99576 * 3 2 1 32 32 H 0.96998 * 119.99918 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.47152 * 269.69083 * 20 19 17 34 34 H 1.09001 * 109.46980 * 149.69183 * 20 19 17 35 35 H 1.09004 * 109.47113 * 29.69164 * 20 19 17 36 36 H 0.96693 * 116.99895 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3584 1.4427 1.0980 6 6 3.9135 1.4423 2.4947 7 8 2.7252 1.4412 2.7545 8 8 4.8218 1.4431 3.4918 9 6 4.3459 1.4421 4.7536 10 1 3.2801 1.4411 4.9286 11 6 5.2255 1.4422 5.8270 12 7 6.5225 1.4429 5.6139 13 14 4.5662 1.4416 7.5748 14 1 3.0815 1.4403 7.5439 15 1 5.0470 0.2291 8.2847 16 1 5.0459 2.6541 8.2853 17 7 5.6680 1.4374 0.6679 18 1 6.4484 1.4327 1.2438 19 6 5.6923 1.4425 -0.6742 20 6 6.9305 1.4419 -1.5333 21 6 4.3880 1.4423 -1.1349 22 6 3.9571 1.4421 -2.5430 23 8 3.7790 0.3895 -3.1237 24 8 3.7604 2.6091 -3.1877 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 7.1372 1.4426 6.3642 33 1 7.2291 2.4694 -1.7410 34 1 6.7216 0.9276 -2.4713 35 1 7.7363 0.9282 -1.0089 36 1 3.4782 2.5583 -4.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596046762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:58 Heat of formation + Delta-G solvation = -172.582896 kcal Electronic energy + Delta-G solvation = -22106.827417 eV Core-core repulsion = 18555.436173 eV Total energy + Delta-G solvation = -3551.391244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.83924 -40.92175 -40.43775 -37.43627 -36.96468 -36.12046 -34.34311 -32.83649 -32.54997 -28.83733 -28.15541 -26.90460 -25.21646 -23.21644 -22.41313 -21.14963 -20.33020 -19.96528 -19.49793 -18.88629 -17.44308 -17.00459 -16.81918 -16.64738 -16.20989 -15.84361 -15.67403 -15.60096 -14.94939 -14.57581 -14.22558 -14.16167 -13.95044 -13.64203 -13.48249 -13.23959 -13.10939 -12.79649 -12.51482 -12.44188 -12.24628 -12.19857 -12.16591 -12.05596 -11.83928 -11.65494 -11.06987 -10.73490 -10.04726 -9.31499 -8.59727 -6.35641 0.27648 1.05141 1.06458 1.33787 1.38704 1.51581 1.85874 2.04253 2.13548 2.34014 2.78260 2.97163 3.60394 3.86845 3.90439 4.14419 4.22216 4.32912 4.48128 4.54548 4.63635 4.67970 4.71897 4.85127 4.96871 4.99246 5.01875 5.13008 5.16679 5.34426 5.40124 5.44826 5.55527 5.69869 5.77830 6.26605 6.55808 6.86527 7.04472 7.66177 8.61075 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.005014 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.306053 B = 5582.638670 C = 6702.058113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.058 4.058 4 C -0.037 4.037 5 C -0.041 4.041 6 C 0.466 3.534 7 O -0.556 6.556 8 O -0.240 6.240 9 C -0.415 4.415 10 H 0.084 0.916 11 C -0.001 4.001 12 N -0.900 5.900 13 Si 1.017 2.983 14 H -0.265 1.265 15 H -0.261 1.261 16 H -0.259 1.259 17 N -0.506 5.506 18 H 0.436 0.564 19 C 0.127 3.873 20 C -0.094 4.094 21 C -0.243 4.243 22 C 0.585 3.415 23 O -0.533 6.533 24 O -0.500 6.500 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.280 0.720 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 1.536 -15.402 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.096 4.096 4 C -0.044 4.044 5 C -0.150 4.150 6 C 0.315 3.685 7 O -0.453 6.453 8 O -0.149 6.149 9 C -0.490 4.490 10 H 0.102 0.898 11 C -0.201 4.201 12 N -0.537 5.537 13 Si 0.836 3.164 14 H -0.189 1.189 15 H -0.185 1.185 16 H -0.184 1.184 17 N -0.101 5.101 18 H 0.276 0.724 19 C 0.003 3.997 20 C -0.151 4.151 21 C -0.250 4.250 22 C 0.428 3.572 23 O -0.423 6.423 24 O -0.314 6.314 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -0.572 1.280 -14.796 14.863 hybrid contribution -0.052 -0.098 0.780 0.788 sum -0.624 1.183 -14.017 14.080 Atomic orbital electron populations 1.21703 0.93773 1.02339 1.02138 1.21332 0.97325 0.95217 1.00715 1.20258 0.87952 0.98356 1.03016 1.19635 0.96019 0.99790 0.88949 1.18767 0.84692 1.21444 0.90134 1.20193 0.84820 0.77927 0.85575 1.90637 1.18211 1.52043 1.84373 1.83911 1.38075 1.77154 1.15743 1.21482 0.94183 1.54526 0.78855 0.89799 1.26488 0.95126 0.94642 1.03883 1.70037 1.02634 1.46706 1.34303 0.84573 0.78569 0.79230 0.74066 1.18868 1.18507 1.18382 1.41693 1.07635 1.53907 1.06901 0.72353 1.21286 0.96506 0.99242 0.82713 1.20762 0.90787 1.05654 0.97938 1.18268 0.93060 1.23505 0.90155 1.19563 0.71458 0.80938 0.85215 1.90881 1.48795 1.34076 1.68505 1.84679 1.79819 1.33754 1.33099 0.91171 0.91704 0.93259 0.92092 0.94534 0.90958 0.89754 0.91094 0.87259 0.88768 0.88484 0.70706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.13 16 2 C -0.11 -3.61 5.92 30.59 0.18 -3.43 16 3 C -0.06 -2.04 4.97 29.85 0.15 -1.89 16 4 C -0.04 -1.38 5.47 -19.52 -0.11 -1.48 16 5 C -0.04 -1.73 7.02 39.97 0.28 -1.45 16 6 C 0.47 24.38 7.87 70.00 0.55 24.93 16 7 O -0.56 -30.79 13.94 19.39 0.27 -30.52 16 8 O -0.24 -13.97 9.75 9.82 0.10 -13.87 16 9 C -0.41 -24.86 9.65 67.95 0.66 -24.21 16 10 H 0.08 5.13 6.86 -2.91 -0.02 5.11 16 11 C 0.00 -0.05 5.49 84.88 0.47 0.42 16 12 N -0.90 -51.41 13.67 21.63 0.30 -51.12 16 13 Si 1.02 42.75 29.55 68.60 2.03 44.78 16 14 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 15 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 16 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 17 N -0.51 -17.07 6.01 -171.67 -1.03 -18.10 16 18 H 0.44 13.76 8.96 -92.71 -0.83 12.93 16 19 C 0.13 3.51 7.21 42.22 0.30 3.82 16 20 C -0.09 -1.57 10.24 71.24 0.73 -0.84 16 21 C -0.24 -7.61 6.01 -20.13 -0.12 -7.73 16 22 C 0.59 15.74 7.51 70.19 0.53 16.26 16 23 O -0.53 -16.55 17.89 19.75 0.35 -16.20 16 24 O -0.50 -9.61 13.44 -56.75 -0.76 -10.37 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 2.89 6.41 -2.39 -0.02 2.87 16 31 H 0.08 2.50 8.05 -2.39 -0.02 2.48 16 32 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.44 7.93 -2.39 -0.02 1.42 16 35 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.43 3.53 9.11 -74.06 -0.67 2.86 16 Total: -1.00 -76.83 325.47 5.21 -71.62 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.36 Total: 22.50 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 4.33 Total: 1.27 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -0.74 Total: -69.21 kcal Atomic # 8 Polarization: -70.91 SS G_CDS: -0.04 Total: -70.96 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -76.83 5.21 -71.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596046762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.960 kcal (2) G-P(sol) polarization free energy of solvation -76.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds