Wall clock time and date at job start Fri Apr 10 2020 14:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21610 * 119.99823 * 0.02562 * 14 13 3 16 16 C 1.47327 * 120.00045 * 180.02562 * 14 13 3 17 17 C 1.36578 * 125.79898 * 180.02562 * 16 14 13 18 18 C 1.40042 * 106.93589 * 179.97438 * 17 16 14 19 19 C 1.36635 * 106.91600 * 359.97438 * 18 17 16 20 20 C 1.47141 * 125.81242 * 180.02562 * 19 18 17 21 21 O 1.21540 * 120.00135 * 359.97438 * 20 19 18 22 22 O 1.34814 * 120.00242 * 179.97438 * 20 19 18 23 23 C 1.45199 * 117.00212 * 179.97438 * 22 20 19 24 24 O 1.34530 * 125.79700 * 359.69475 * 16 14 13 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.08003 * 126.53139 * 0.02562 * 17 16 14 33 33 H 1.07997 * 126.53898 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.47292 * 180.02562 * 23 22 20 35 35 H 1.09000 * 109.47606 * 300.00403 * 23 22 20 36 36 H 1.09010 * 109.46909 * 60.00159 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3417 2.6318 0.4320 16 6 0.0456 3.3234 2.6257 17 6 -1.1520 3.9323 2.8714 18 6 -1.0994 4.4219 4.1824 19 6 0.1284 4.0903 4.6817 20 6 0.6227 4.4050 6.0314 21 8 -0.0844 5.0128 6.8111 22 8 1.8597 4.0192 6.4033 23 6 2.2812 4.3643 7.7492 24 8 0.8068 3.4223 3.7306 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 -1.9818 4.0190 2.1855 33 1 -1.8804 4.9590 4.6999 34 1 3.2932 3.9965 7.9186 35 1 2.2639 5.4475 7.8689 36 1 1.6029 3.9081 8.4705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183971675.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:50 Heat of formation + Delta-G solvation = -106.590378 kcal Electronic energy + Delta-G solvation = -21708.341922 eV Core-core repulsion = 18159.812328 eV Total energy + Delta-G solvation = -3548.529593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.88190 -40.44721 -39.01434 -36.82428 -35.29770 -33.30512 -32.49032 -31.32170 -30.40034 -28.09406 -27.08294 -24.66724 -23.13814 -22.16465 -21.24402 -20.39298 -19.53340 -18.83710 -17.90704 -17.20139 -17.04370 -16.12843 -16.02882 -15.48582 -14.60516 -14.49064 -14.31856 -13.70832 -13.52489 -13.34002 -13.15670 -13.12821 -12.71664 -12.46647 -12.17684 -11.62560 -11.32282 -11.19563 -11.13535 -11.03040 -10.90791 -10.39697 -10.29116 -10.24750 -9.77275 -9.54349 -9.13833 -8.92197 -8.58223 -8.02580 -6.18608 -4.28290 0.44946 1.78335 1.99468 2.63793 2.72617 3.21340 3.29568 3.32363 3.55868 3.77097 4.30646 4.53838 4.66495 4.81189 4.90104 5.06135 5.13772 5.22165 5.32633 5.53064 5.69005 5.90854 6.07588 6.31925 6.37377 6.53008 6.56520 6.95551 7.09241 7.16164 7.27906 7.34081 7.52275 7.63543 7.79269 8.07679 8.43041 8.61610 8.85626 9.38671 10.86880 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.004367 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.038451 B = 6410.702814 C = 7547.488527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.686 5.686 14 C 0.579 3.421 15 O -0.516 6.516 16 C -0.001 4.001 17 C -0.159 4.159 18 C -0.110 4.110 19 C -0.055 4.055 20 C 0.556 3.444 21 O -0.488 6.488 22 O -0.344 6.344 23 C 0.036 3.964 24 O -0.138 6.138 25 H 0.036 0.964 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.103 0.897 30 H 0.265 0.735 31 H 0.396 0.604 32 H 0.172 0.828 33 H 0.169 0.831 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 5.881 14.918 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.333 5.333 14 C 0.361 3.639 15 O -0.395 6.395 16 C -0.056 4.056 17 C -0.179 4.179 18 C -0.130 4.130 19 C -0.107 4.107 20 C 0.401 3.599 21 O -0.377 6.377 22 O -0.260 6.260 23 C -0.057 4.057 24 O -0.033 6.033 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.189 0.811 33 H 0.187 0.813 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.665 5.790 14.335 16.149 hybrid contribution 1.140 0.104 0.491 1.246 sum -3.525 5.894 14.826 16.339 Atomic orbital electron populations 1.21866 0.98283 0.98436 1.01148 1.21960 0.92665 0.99443 1.02701 1.18985 0.94760 0.89399 0.80216 0.92744 1.21237 0.90360 1.39337 1.06527 0.91802 1.24871 0.98776 0.94629 0.95261 1.69890 1.35168 1.37462 1.09330 0.86370 0.84612 0.77829 0.78183 1.19674 1.20817 1.20825 1.46592 1.13640 1.53792 1.19235 1.16743 0.83902 0.79677 0.83550 1.90864 1.51774 1.60145 1.36713 1.23432 0.91776 1.02961 0.87442 1.21955 0.98506 1.00852 0.96586 1.21951 0.95867 1.00431 0.94767 1.20866 0.93764 1.06807 0.89230 1.19307 0.80161 0.75971 0.84510 1.90920 1.57377 1.38267 1.51165 1.86682 1.31693 1.72775 1.34869 1.23387 1.01166 1.01753 0.79408 1.84179 1.41299 1.57903 1.19881 0.94467 0.95483 0.92956 0.94722 0.87904 0.92493 0.77035 0.81059 0.81309 0.87501 0.91504 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.50 2.24 -69.08 -0.15 6.34 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 6 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.31 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.69 -14.07 5.02 -56.04 -0.28 -14.35 16 14 C 0.58 11.32 6.38 -12.57 -0.08 11.24 16 15 O -0.52 -11.34 13.99 5.27 0.07 -11.27 16 16 C 0.00 -0.01 7.14 -36.49 -0.26 -0.27 16 17 C -0.16 -2.16 10.59 -39.50 -0.42 -2.58 16 18 C -0.11 -1.35 10.60 -39.48 -0.42 -1.77 16 19 C -0.05 -0.75 7.19 -36.55 -0.26 -1.02 16 20 C 0.56 7.27 7.95 34.34 0.27 7.55 16 21 O -0.49 -6.78 16.65 -19.29 -0.32 -7.10 16 22 O -0.34 -4.13 10.58 -42.22 -0.45 -4.58 16 23 C 0.04 0.28 10.57 101.05 1.07 1.35 16 24 O -0.14 -2.12 10.41 4.13 0.04 -2.08 16 25 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.36 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.40 7.38 8.30 -40.82 -0.34 7.04 16 32 H 0.17 2.07 8.06 -52.48 -0.42 1.65 16 33 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -29.32 317.62 -5.26 -34.59 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.24 Total: 5.57 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.48 Total: 2.59 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.34 Total: -37.66 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.65 Total: -25.03 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.32 -5.26 -34.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183971675.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.005 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds