Wall clock time and date at job start Fri Apr 10 2020 14:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21610 * 119.99823 * 0.02562 * 14 13 3 16 16 C 1.47327 * 120.00045 * 180.02562 * 14 13 3 17 17 C 1.36578 * 125.79898 * 180.02562 * 16 14 13 18 18 C 1.40042 * 106.93589 * 179.97438 * 17 16 14 19 19 C 1.36635 * 106.91600 * 359.97438 * 18 17 16 20 20 C 1.47141 * 125.81242 * 180.02562 * 19 18 17 21 21 O 1.21540 * 120.00135 * 359.97438 * 20 19 18 22 22 O 1.34814 * 120.00242 * 179.97438 * 20 19 18 23 23 C 1.45199 * 117.00212 * 179.97438 * 22 20 19 24 24 O 1.34530 * 125.79700 * 359.69475 * 16 14 13 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.08003 * 126.53139 * 0.02562 * 17 16 14 33 33 H 1.07997 * 126.53898 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.47292 * 180.02562 * 23 22 20 35 35 H 1.09000 * 109.47606 * 300.00403 * 23 22 20 36 36 H 1.09010 * 109.46909 * 60.00159 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3417 2.6318 0.4320 16 6 0.0456 3.3234 2.6257 17 6 -1.1520 3.9323 2.8714 18 6 -1.0994 4.4219 4.1824 19 6 0.1284 4.0903 4.6817 20 6 0.6227 4.4050 6.0314 21 8 -0.0844 5.0128 6.8111 22 8 1.8597 4.0192 6.4033 23 6 2.2812 4.3643 7.7492 24 8 0.8068 3.4223 3.7306 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 -1.9818 4.0190 2.1855 33 1 -1.8804 4.9590 4.6999 34 1 3.2932 3.9965 7.9186 35 1 2.2639 5.4475 7.8689 36 1 1.6029 3.9081 8.4705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183971675.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:50 Heat of formation + Delta-G solvation = -125.213856 kcal Electronic energy + Delta-G solvation = -21709.149496 eV Core-core repulsion = 18159.812328 eV Total energy + Delta-G solvation = -3549.337168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.01514 -41.42066 -40.62530 -37.76877 -37.09351 -34.58893 -34.17364 -33.02790 -31.65753 -29.23361 -28.58845 -25.97372 -24.83207 -23.38964 -22.44256 -21.79041 -21.23020 -20.06083 -19.24307 -18.21909 -18.09565 -17.83628 -17.31125 -17.10808 -16.30110 -16.08623 -15.44181 -15.07930 -14.68448 -14.43331 -14.35948 -14.27264 -14.20939 -13.88259 -13.51672 -13.18436 -13.13933 -12.91193 -12.70951 -12.19835 -12.15639 -12.09052 -11.93204 -11.61849 -11.30694 -11.22679 -11.07533 -10.55693 -10.13728 -9.74951 -8.17351 -6.34319 -0.68428 0.65132 0.96835 1.44898 1.46732 1.57874 1.61918 1.67705 2.08623 2.29068 2.49646 3.12726 3.48028 3.63777 3.82537 4.20426 4.28784 4.32023 4.33241 4.49738 4.56806 4.68035 4.71715 4.74723 5.02219 5.03473 5.05570 5.23902 5.37560 5.41939 5.45644 5.58268 5.76394 5.85913 6.13246 6.37965 6.69082 6.75173 7.16508 7.38594 8.88233 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.004367 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.038451 B = 6410.702814 C = 7547.488527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.275 3.725 4 H 0.012 0.988 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.283 1.283 13 N -0.688 5.688 14 C 0.583 3.417 15 O -0.547 6.547 16 C -0.031 4.031 17 C -0.136 4.136 18 C -0.097 4.097 19 C -0.057 4.057 20 C 0.559 3.441 21 O -0.497 6.497 22 O -0.357 6.357 23 C 0.027 3.973 24 O -0.148 6.148 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.266 0.734 31 H 0.405 0.595 32 H 0.188 0.812 33 H 0.201 0.799 34 H 0.132 0.868 35 H 0.073 0.927 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 6.501 16.965 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.173 3.827 4 H 0.030 0.970 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.209 1.209 13 N -0.336 5.336 14 C 0.368 3.632 15 O -0.427 6.427 16 C -0.086 4.086 17 C -0.156 4.156 18 C -0.116 4.116 19 C -0.109 4.109 20 C 0.404 3.596 21 O -0.387 6.387 22 O -0.273 6.273 23 C -0.065 4.065 24 O -0.044 6.044 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.240 0.760 32 H 0.205 0.795 33 H 0.218 0.782 34 H 0.150 0.850 35 H 0.092 0.908 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.519 6.419 16.418 18.199 hybrid contribution 1.070 -0.021 -0.026 1.070 sum -3.450 6.397 16.392 17.931 Atomic orbital electron populations 1.21715 0.96711 0.99603 1.00414 1.21811 0.94011 0.98699 1.01646 1.18586 0.94078 0.89518 0.80525 0.97038 1.21553 0.91212 1.39312 1.06844 0.91276 1.25693 1.03165 0.94226 0.94915 1.70023 1.36960 1.38112 1.09814 0.85343 0.79251 0.77868 0.78157 1.18774 1.20365 1.20868 1.46344 1.14589 1.54315 1.18329 1.16981 0.82935 0.78853 0.84476 1.90839 1.52403 1.61174 1.38334 1.22725 0.93132 1.05683 0.87029 1.22247 0.97569 0.98551 0.97261 1.22291 0.95918 0.99567 0.93862 1.21290 0.94248 1.06075 0.89277 1.19205 0.80506 0.75769 0.84110 1.90916 1.57732 1.38755 1.51283 1.86671 1.30967 1.72598 1.37021 1.23750 1.02655 1.02522 0.77570 1.84136 1.41653 1.58636 1.19936 0.93989 0.93255 0.94821 0.94067 0.90438 0.92435 0.75979 0.79501 0.78165 0.84964 0.90838 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.51 71.98 0.61 -4.88 16 2 C -0.12 -5.88 5.45 30.59 0.17 -5.72 16 3 C 0.28 13.79 2.24 44.24 0.10 13.89 16 4 H 0.01 0.68 7.58 -2.39 -0.02 0.67 16 5 C -0.55 -28.73 8.73 25.60 0.22 -28.50 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.09 5.29 84.66 0.45 1.54 16 8 N -0.91 -50.64 11.29 21.45 0.24 -50.40 16 9 Si 0.97 41.43 29.54 68.60 2.03 43.45 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 N -0.69 -28.75 5.02 -449.48 -2.26 -31.01 16 14 C 0.58 23.04 6.38 86.64 0.55 23.59 16 15 O -0.55 -24.53 13.99 -4.06 -0.06 -24.58 16 16 C -0.03 -0.98 7.14 24.27 0.17 -0.81 16 17 C -0.14 -3.43 10.59 22.32 0.24 -3.19 16 18 C -0.10 -2.09 10.60 22.33 0.24 -1.85 16 19 C -0.06 -1.46 7.19 24.23 0.17 -1.28 16 20 C 0.56 13.50 7.95 70.16 0.56 14.06 16 21 O -0.50 -12.63 16.65 19.71 0.33 -12.30 16 22 O -0.36 -7.90 10.58 -55.90 -0.59 -8.50 16 23 C 0.03 0.36 10.57 113.37 1.20 1.56 16 24 O -0.15 -4.40 10.41 -7.16 -0.07 -4.47 16 25 H 0.04 1.75 5.64 -2.39 -0.01 1.73 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.03 1.55 7.84 -2.38 -0.02 1.53 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 4.14 5.95 -2.39 -0.01 4.12 16 30 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.41 15.24 8.30 -92.71 -0.77 14.47 16 32 H 0.19 4.08 8.06 -2.91 -0.02 4.06 16 33 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.88 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -63.77 317.62 4.65 -59.12 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.35 Total: 20.28 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 4.68 Total: 8.40 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -2.01 Total: -81.40 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.39 Total: -49.85 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -63.77 4.65 -59.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183971675.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.090 kcal (2) G-P(sol) polarization free energy of solvation -63.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds