Wall clock time and date at job start Fri Apr 10 2020 14:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47293 * 2 1 4 4 H 1.08996 * 109.47467 * 303.57060 * 3 2 1 5 5 C 1.50701 * 109.47186 * 183.56315 * 3 2 1 6 6 H 1.07997 * 120.00389 * 275.05819 * 5 3 2 7 7 C 1.37881 * 119.99442 * 95.05879 * 5 3 2 8 8 N 1.31521 * 119.99384 * 184.84709 * 7 5 3 9 9 Si 1.86800 * 120.00251 * 4.84354 * 7 5 3 10 10 H 1.48501 * 109.46894 * 84.87812 * 9 7 5 11 11 H 1.48495 * 109.46948 * 204.87484 * 9 7 5 12 12 H 1.48502 * 109.46931 * 324.87541 * 9 7 5 13 13 N 1.46900 * 109.46675 * 63.56778 * 3 2 1 14 14 C 1.47150 * 110.99927 * 179.97438 * 13 3 2 15 15 C 1.52961 * 108.62814 * 165.32357 * 14 13 3 16 16 C 1.50541 * 109.82792 * 50.37765 * 15 14 13 17 17 N 1.32643 * 119.27660 * 163.16605 * 16 15 14 18 18 C 1.31824 * 120.85187 * 179.84989 * 17 16 15 19 19 Cl 1.73604 * 119.15619 * 179.97438 * 18 17 16 20 20 N 1.31941 * 121.69409 * 359.97438 * 18 17 16 21 21 C 1.32267 * 120.72172 * 0.22608 * 20 18 17 22 22 C 1.37955 * 121.65160 * 343.12237 * 16 15 14 23 23 C 1.46731 * 111.00110 * 56.86731 * 13 3 2 24 24 H 1.09000 * 109.46578 * 299.99312 * 1 2 3 25 25 H 1.09000 * 109.46814 * 59.99509 * 1 2 3 26 26 H 1.09005 * 109.47228 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46627 * 240.00216 * 2 1 3 28 28 H 1.08993 * 109.47046 * 120.00756 * 2 1 3 29 29 H 0.97003 * 119.99037 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.61291 * 45.57707 * 14 13 3 31 31 H 1.09009 * 109.75388 * 285.14501 * 14 13 3 32 32 H 1.09006 * 109.41170 * 290.27607 * 15 14 13 33 33 H 1.08997 * 109.41526 * 170.49038 * 15 14 13 34 34 H 1.08008 * 120.42897 * 180.02562 * 21 20 18 35 35 H 1.08997 * 109.31960 * 55.41701 * 23 13 3 36 36 H 1.08995 * 109.32037 * 295.96424 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6255 1.9745 -0.8562 5 6 3.5445 1.4433 -0.0883 6 1 4.1381 1.3419 0.8081 7 6 4.1630 1.5737 -1.3137 8 7 5.4717 1.4790 -1.4030 9 14 3.1421 1.8846 -2.8469 10 1 2.8807 3.3403 -2.9807 11 1 3.8825 1.4029 -4.0406 12 1 1.8517 1.1578 -2.7381 13 7 1.6220 2.1095 1.2402 14 6 2.0964 3.5020 1.2758 15 6 1.3430 4.2469 2.3791 16 6 1.4065 3.4605 3.6612 17 7 1.1191 4.0638 4.8070 18 6 1.1620 3.4042 5.9476 19 17 0.7781 4.2375 7.4214 20 7 1.4892 2.1270 5.9979 21 6 1.7918 1.4630 4.8947 22 6 1.7557 2.1260 3.6754 23 6 2.1007 1.3774 2.4183 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.9068 1.5711 -2.2651 30 1 1.9034 3.9789 0.3148 31 1 3.1659 3.5217 1.4857 32 1 0.3015 4.3747 2.0838 33 1 1.7980 5.2255 2.5314 34 1 2.0586 0.4175 4.9413 35 1 3.1823 1.2588 2.3542 36 1 1.6337 0.3930 2.4454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:34 Heat of formation + Delta-G solvation = 41.180650 kcal Electronic energy + Delta-G solvation = -20140.530064 eV Core-core repulsion = 17071.410219 eV Total energy + Delta-G solvation = -3069.119845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.25295 -38.17462 -36.83442 -34.76277 -33.61141 -32.17436 -31.39116 -30.15389 -27.45325 -25.25540 -24.33433 -23.12544 -22.67484 -20.60996 -19.13229 -17.74018 -17.32188 -17.06004 -15.67218 -15.40753 -14.64245 -14.30013 -14.05142 -14.01416 -13.52010 -13.15737 -12.95516 -12.69523 -12.37900 -12.08395 -11.86579 -11.60250 -11.56778 -11.42562 -11.04187 -11.00519 -10.91942 -10.55376 -10.30080 -10.10420 -10.01975 -9.81300 -9.51270 -9.21761 -8.94158 -8.71257 -7.41179 -6.26230 -4.29348 0.82104 1.02420 1.43696 3.16208 3.26694 3.27837 3.63231 4.01334 4.25663 4.50775 4.55825 4.64666 5.00257 5.04636 5.09569 5.48630 5.69465 5.76471 5.88840 5.91300 5.98298 6.04024 6.12603 6.15794 6.31381 6.36479 6.53247 6.60440 6.65718 6.79625 6.87879 7.04405 7.07785 7.39517 7.78620 7.86945 7.94872 8.27926 8.75371 9.36946 10.86153 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.029377 B = 0.004602 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.889626 B = 6083.221314 C = 6302.167501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.179 3.821 4 H 0.047 0.953 5 C -0.550 4.550 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.892 5.892 9 Si 0.872 3.128 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.261 1.261 13 N -0.525 5.525 14 C 0.062 3.938 15 C -0.068 4.068 16 C 0.205 3.795 17 N -0.509 5.509 18 C 0.348 3.652 19 Cl 0.009 6.991 20 N -0.511 5.511 21 C 0.159 3.841 22 C -0.160 4.160 23 C 0.095 3.905 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.033 0.967 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.265 0.735 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.178 0.822 35 H 0.074 0.926 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 1.955 8.942 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C 0.072 3.928 4 H 0.065 0.935 5 C -0.589 4.589 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.249 5.249 14 C -0.067 4.067 15 C -0.107 4.107 16 C 0.060 3.940 17 N -0.226 5.226 18 C 0.054 3.946 19 Cl 0.037 6.963 20 N -0.228 5.228 21 C -0.007 4.007 22 C -0.165 4.165 23 C -0.034 4.034 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.195 0.805 35 H 0.092 0.908 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.357 2.523 9.790 13.776 hybrid contribution 0.722 -0.226 -1.407 1.597 sum -8.635 2.297 8.383 12.252 Atomic orbital electron populations 1.21784 0.97687 0.99373 1.01511 1.21803 0.93483 0.98741 1.01117 1.19785 0.94463 0.90923 0.87625 0.93471 1.21500 0.90210 1.52035 0.95112 0.90646 1.25015 0.94663 0.93893 0.98820 1.69921 1.08688 1.48735 1.25503 0.86933 0.80990 0.79238 0.82932 1.20005 1.21462 1.18560 1.62885 1.57761 1.01563 1.02672 1.21921 0.97695 0.89781 0.97291 1.20689 1.03140 0.97962 0.88875 1.21386 0.88799 0.90949 0.92827 1.67786 1.16981 1.40203 0.97670 1.22744 0.96319 0.87200 0.88384 1.98405 1.91864 1.76381 1.29646 1.67818 1.14131 1.07938 1.32922 1.23146 0.91342 1.00253 0.85945 1.21604 1.00332 0.95994 0.98531 1.20845 1.00341 0.96379 0.85880 0.92374 0.93914 0.94753 0.92598 0.92827 0.92468 0.90044 0.92861 0.88699 0.89230 0.80505 0.90815 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.79 37.16 0.36 -1.97 16 2 C -0.11 -2.10 5.05 -26.73 -0.13 -2.24 16 3 C 0.18 3.64 1.45 -68.86 -0.10 3.54 16 4 H 0.05 1.01 5.25 -51.93 -0.27 0.74 16 5 C -0.55 -13.41 7.43 -34.44 -0.26 -13.67 16 6 H 0.08 2.02 6.38 -52.49 -0.34 1.69 16 7 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -25.22 13.96 55.43 0.77 -24.45 16 9 Si 0.87 19.71 26.99 -169.99 -4.59 15.12 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.63 6.82 56.52 0.39 -5.25 16 13 N -0.53 -9.30 4.10 -229.66 -0.94 -10.24 16 14 C 0.06 1.06 4.94 -3.71 -0.02 1.04 16 15 C -0.07 -0.99 6.22 -27.98 -0.17 -1.16 16 16 C 0.20 3.23 6.67 -82.42 -0.55 2.68 16 17 N -0.51 -8.22 10.32 -8.04 -0.08 -8.31 16 18 C 0.35 5.41 8.18 -92.00 -0.75 4.66 16 19 Cl 0.01 0.12 29.27 -51.86 -1.52 -1.40 16 20 N -0.51 -7.80 10.41 -11.60 -0.12 -7.92 16 21 C 0.16 2.20 10.97 -17.14 -0.19 2.01 16 22 C -0.16 -2.44 5.79 -104.69 -0.61 -3.04 16 23 C 0.09 1.54 4.53 -5.25 -0.02 1.51 16 24 H 0.06 0.91 7.71 -51.93 -0.40 0.51 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.95 6.24 -51.93 -0.32 0.63 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 30 H 0.08 1.38 8.00 -51.93 -0.42 0.97 16 31 H 0.05 1.01 7.59 -51.92 -0.39 0.62 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.18 1.86 8.06 -52.48 -0.42 1.43 16 35 H 0.07 1.36 6.15 -51.93 -0.32 1.04 16 36 H 0.09 1.36 6.39 -51.93 -0.33 1.03 16 LS Contribution 303.36 15.07 4.57 4.57 Total: -1.00 -27.47 303.36 -8.92 -36.39 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -4.48 Total: 0.88 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.54 Total: -4.66 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.37 Total: -50.91 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.59 Total: 15.12 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -1.52 Total: -1.40 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.47 -8.92 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.572 kcal (2) G-P(sol) polarization free energy of solvation -27.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds