Wall clock time and date at job start Fri Apr 10 2020 14:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47293 * 2 1 4 4 H 1.08996 * 109.47467 * 303.57060 * 3 2 1 5 5 C 1.50701 * 109.47186 * 183.56315 * 3 2 1 6 6 H 1.07997 * 120.00389 * 275.05819 * 5 3 2 7 7 C 1.37881 * 119.99442 * 95.05879 * 5 3 2 8 8 N 1.31521 * 119.99384 * 184.84709 * 7 5 3 9 9 Si 1.86800 * 120.00251 * 4.84354 * 7 5 3 10 10 H 1.48501 * 109.46894 * 84.87812 * 9 7 5 11 11 H 1.48495 * 109.46948 * 204.87484 * 9 7 5 12 12 H 1.48502 * 109.46931 * 324.87541 * 9 7 5 13 13 N 1.46900 * 109.46675 * 63.56778 * 3 2 1 14 14 C 1.47150 * 110.99927 * 179.97438 * 13 3 2 15 15 C 1.52961 * 108.62814 * 165.32357 * 14 13 3 16 16 C 1.50541 * 109.82792 * 50.37765 * 15 14 13 17 17 N 1.32643 * 119.27660 * 163.16605 * 16 15 14 18 18 C 1.31824 * 120.85187 * 179.84989 * 17 16 15 19 19 Cl 1.73604 * 119.15619 * 179.97438 * 18 17 16 20 20 N 1.31941 * 121.69409 * 359.97438 * 18 17 16 21 21 C 1.32267 * 120.72172 * 0.22608 * 20 18 17 22 22 C 1.37955 * 121.65160 * 343.12237 * 16 15 14 23 23 C 1.46731 * 111.00110 * 56.86731 * 13 3 2 24 24 H 1.09000 * 109.46578 * 299.99312 * 1 2 3 25 25 H 1.09000 * 109.46814 * 59.99509 * 1 2 3 26 26 H 1.09005 * 109.47228 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46627 * 240.00216 * 2 1 3 28 28 H 1.08993 * 109.47046 * 120.00756 * 2 1 3 29 29 H 0.97003 * 119.99037 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.61291 * 45.57707 * 14 13 3 31 31 H 1.09009 * 109.75388 * 285.14501 * 14 13 3 32 32 H 1.09006 * 109.41170 * 290.27607 * 15 14 13 33 33 H 1.08997 * 109.41526 * 170.49038 * 15 14 13 34 34 H 1.08008 * 120.42897 * 180.02562 * 21 20 18 35 35 H 1.08997 * 109.31960 * 55.41701 * 23 13 3 36 36 H 1.08995 * 109.32037 * 295.96424 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6255 1.9745 -0.8562 5 6 3.5445 1.4433 -0.0883 6 1 4.1381 1.3419 0.8081 7 6 4.1630 1.5737 -1.3137 8 7 5.4717 1.4790 -1.4030 9 14 3.1421 1.8846 -2.8469 10 1 2.8807 3.3403 -2.9807 11 1 3.8825 1.4029 -4.0406 12 1 1.8517 1.1578 -2.7381 13 7 1.6220 2.1095 1.2402 14 6 2.0964 3.5020 1.2758 15 6 1.3430 4.2469 2.3791 16 6 1.4065 3.4605 3.6612 17 7 1.1191 4.0638 4.8070 18 6 1.1620 3.4042 5.9476 19 17 0.7781 4.2375 7.4214 20 7 1.4892 2.1270 5.9979 21 6 1.7918 1.4630 4.8947 22 6 1.7557 2.1260 3.6754 23 6 2.1007 1.3774 2.4183 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.9068 1.5711 -2.2651 30 1 1.9034 3.9789 0.3148 31 1 3.1659 3.5217 1.4857 32 1 0.3015 4.3747 2.0838 33 1 1.7980 5.2255 2.5314 34 1 2.0586 0.4175 4.9413 35 1 3.1823 1.2588 2.3542 36 1 1.6337 0.3930 2.4454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:34 Heat of formation + Delta-G solvation = 24.247107 kcal Electronic energy + Delta-G solvation = -20141.264358 eV Core-core repulsion = 17071.410219 eV Total energy + Delta-G solvation = -3069.854138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.44977 -39.60085 -37.95858 -36.09435 -34.97944 -34.01092 -32.67940 -31.44796 -29.09275 -26.63345 -25.68507 -24.38667 -24.17504 -21.96428 -20.66810 -19.21232 -18.85652 -18.30282 -17.10167 -16.68924 -16.32378 -15.65365 -15.48396 -15.20916 -14.83597 -14.69698 -14.33299 -14.19393 -13.82658 -13.53015 -13.32116 -12.91054 -12.77383 -12.72470 -12.54086 -12.43357 -12.30172 -11.89264 -11.75076 -11.69243 -11.51772 -11.39753 -11.19068 -10.66213 -10.42596 -10.16134 -8.97488 -8.27513 -6.32150 -0.37472 -0.13644 0.30734 1.36693 1.40906 1.49096 2.35947 2.44954 2.83467 3.03340 3.26386 3.39519 3.46735 3.76609 3.81813 4.23553 4.38434 4.45170 4.58801 4.65212 4.69976 4.72759 4.77406 4.81888 4.97198 5.02498 5.11941 5.24105 5.30815 5.36438 5.51063 5.56346 5.69450 5.70963 6.16909 6.36219 6.39653 6.69325 6.77221 7.37322 8.88338 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.029377 B = 0.004602 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.889626 B = 6083.221314 C = 6302.167501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.181 3.819 4 H 0.044 0.956 5 C -0.534 4.534 6 H 0.040 0.960 7 C 0.023 3.977 8 N -0.946 5.946 9 Si 0.928 3.072 10 H -0.267 1.267 11 H -0.296 1.296 12 H -0.240 1.240 13 N -0.517 5.517 14 C 0.064 3.936 15 C -0.058 4.058 16 C 0.194 3.806 17 N -0.521 5.521 18 C 0.339 3.661 19 Cl 0.027 6.973 20 N -0.520 5.520 21 C 0.170 3.830 22 C -0.171 4.171 23 C 0.104 3.896 24 H 0.063 0.937 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.263 0.737 30 H 0.082 0.918 31 H 0.023 0.977 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.211 0.789 35 H 0.046 0.954 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.149 1.803 9.466 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.151 4.151 3 C 0.074 3.926 4 H 0.062 0.938 5 C -0.573 4.573 6 H 0.058 0.942 7 C -0.176 4.176 8 N -0.585 5.585 9 Si 0.753 3.247 10 H -0.192 1.192 11 H -0.222 1.222 12 H -0.164 1.164 13 N -0.240 5.240 14 C -0.066 4.066 15 C -0.096 4.096 16 C 0.051 3.949 17 N -0.238 5.238 18 C 0.045 3.955 19 Cl 0.055 6.945 20 N -0.237 5.237 21 C 0.004 3.996 22 C -0.175 4.175 23 C -0.026 4.026 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.042 0.958 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.227 0.773 35 H 0.064 0.936 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.806 2.379 10.336 15.870 hybrid contribution 1.507 -0.173 -1.411 2.072 sum -10.298 2.207 8.924 13.805 Atomic orbital electron populations 1.21675 0.94996 1.00906 1.01755 1.21715 0.95785 0.96874 1.00729 1.19710 0.91480 0.92554 0.88878 0.93825 1.21761 0.92430 1.49626 0.93504 0.94174 1.25791 0.95413 0.94280 1.02081 1.70072 1.10704 1.51719 1.26044 0.86018 0.80166 0.79581 0.78929 1.19236 1.22233 1.16359 1.62875 1.57121 1.01794 1.02173 1.21908 0.96345 0.89852 0.98447 1.20601 1.03685 0.97857 0.87432 1.21577 0.88836 0.91315 0.93221 1.67816 1.17760 1.40385 0.97873 1.23095 0.95858 0.87593 0.88973 1.98409 1.91630 1.76046 1.28389 1.67944 1.14629 1.07899 1.33228 1.23659 0.89483 1.01468 0.84990 1.21518 1.01503 0.96011 0.98508 1.20740 0.98741 0.97222 0.85854 0.91818 0.93946 0.92616 0.94083 0.92306 0.92792 0.89995 0.95849 0.87066 0.87931 0.77262 0.93595 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.79 71.98 0.70 -3.19 16 2 C -0.11 -3.99 5.05 30.59 0.15 -3.83 16 3 C 0.18 7.22 1.45 44.17 0.06 7.28 16 4 H 0.04 1.79 5.25 -2.39 -0.01 1.78 16 5 C -0.53 -26.59 7.43 25.60 0.19 -26.40 16 6 H 0.04 2.25 6.38 -2.91 -0.02 2.23 16 7 C 0.02 1.22 5.47 84.65 0.46 1.68 16 8 N -0.95 -55.45 13.96 21.45 0.30 -55.15 16 9 Si 0.93 40.58 26.99 68.60 1.85 42.43 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.24 -9.60 6.82 99.48 0.68 -8.92 16 13 N -0.52 -17.72 4.10 -880.51 -3.61 -21.33 16 14 C 0.06 2.13 4.94 86.24 0.43 2.56 16 15 C -0.06 -1.58 6.22 29.79 0.19 -1.40 16 16 C 0.19 5.83 6.67 42.32 0.28 6.11 16 17 N -0.52 -15.95 10.32 -179.35 -1.85 -17.80 16 18 C 0.34 9.95 8.18 180.83 1.48 11.43 16 19 Cl 0.03 0.67 29.27 -2.72 -0.08 0.60 16 20 N -0.52 -14.78 10.41 -190.62 -1.98 -16.77 16 21 C 0.17 4.33 10.97 84.77 0.93 5.26 16 22 C -0.17 -4.95 5.79 -19.91 -0.12 -5.07 16 23 C 0.10 3.27 4.53 85.47 0.39 3.65 16 24 H 0.06 1.76 7.71 -2.39 -0.02 1.74 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.04 1.56 8.14 -2.38 -0.02 1.55 16 28 H 0.06 1.99 6.24 -2.39 -0.01 1.98 16 29 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.08 2.71 8.00 -2.39 -0.02 2.70 16 31 H 0.02 0.91 7.59 -2.38 -0.02 0.89 16 32 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.21 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.05 1.74 6.15 -2.39 -0.01 1.72 16 36 H 0.11 2.99 6.39 -2.39 -0.02 2.98 16 Total: -1.00 -59.77 303.36 0.85 -58.92 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.07 Total: 11.01 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 5.15 Total: -1.91 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -7.15 Total: -111.04 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.85 Total: 42.43 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -0.08 Total: 0.60 kcal Total: -59.77 0.85 -58.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.170 kcal (2) G-P(sol) polarization free energy of solvation -59.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds