Wall clock time and date at job start Fri Apr 10 2020 14:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.46808 * 2 1 4 4 C 1.46501 * 120.00060 * 270.00353 * 3 2 1 5 5 C 1.50699 * 109.46742 * 269.99561 * 4 3 2 6 6 H 1.07997 * 120.00405 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00296 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99467 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00532 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47082 * 90.00237 * 9 7 5 11 11 H 1.48495 * 109.47200 * 210.00426 * 9 7 5 12 12 H 1.48500 * 109.47169 * 330.00358 * 9 7 5 13 13 C 1.34776 * 120.00079 * 89.99741 * 3 2 1 14 14 O 1.21283 * 120.00109 * 179.97438 * 13 3 2 15 15 C 1.50709 * 119.99950 * 0.02562 * 13 3 2 16 16 O 1.45200 * 109.46889 * 179.97438 * 15 13 3 17 17 C 1.34895 * 116.99402 * 179.97438 * 16 15 13 18 18 O 1.21622 * 120.00358 * 359.97438 * 17 16 15 19 19 C 1.46470 * 119.99835 * 179.97438 * 17 16 15 20 20 C 1.36644 * 125.99901 * 180.02562 * 19 17 16 21 21 C 1.40309 * 106.70356 * 180.02562 * 20 19 17 22 22 C 1.35164 * 107.12857 * 359.97438 * 21 20 19 23 23 O 1.33914 * 108.78284 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47501 * 299.99762 * 1 2 3 25 25 H 1.08998 * 109.47509 * 60.00289 * 1 2 3 26 26 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47062 * 240.00394 * 2 1 3 28 28 H 1.08994 * 109.47068 * 119.99551 * 2 1 3 29 29 H 1.08994 * 109.47495 * 29.99529 * 4 3 2 30 30 H 1.08998 * 109.47248 * 149.99903 * 4 3 2 31 31 H 0.97004 * 119.99510 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.46691 * 59.99376 * 15 13 3 33 33 H 1.09003 * 109.46594 * 299.99510 * 15 13 3 34 34 H 1.08003 * 126.64401 * 0.02562 * 20 19 17 35 35 H 1.08004 * 126.43398 * 180.02562 * 21 20 19 36 36 H 1.07999 * 125.61053 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2623 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7037 6 1 4.3425 1.2305 -1.0962 7 6 4.1490 2.3898 -2.8779 8 7 3.3488 3.1259 -3.6180 9 14 5.9130 2.0959 -3.4175 10 1 5.9759 0.8748 -4.2602 11 1 6.3920 3.2630 -4.2007 12 1 6.7733 1.9162 -2.2206 13 6 2.2428 2.0166 1.1672 14 8 2.6474 3.1600 1.1672 15 6 1.9921 1.3060 2.4724 16 8 2.3070 2.1955 3.5760 17 6 2.1351 1.7093 4.8225 18 8 1.7325 0.5728 4.9818 19 6 2.4334 2.5502 5.9841 20 6 2.3048 2.1846 7.2944 21 6 2.6965 3.2918 8.0622 22 6 3.0433 4.2723 7.1989 23 8 2.8844 3.8215 5.9480 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.5816 1.6878 -2.0284 30 1 2.0953 3.1411 -1.1384 31 1 3.6749 3.5164 -4.4440 32 1 2.6227 0.4188 2.5298 33 1 0.9442 1.0115 2.5302 34 1 1.9671 1.2288 7.6668 35 1 2.7177 3.3493 9.1405 36 1 3.3921 5.2570 7.4729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060797201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:40 Heat of formation + Delta-G solvation = -96.062609 kcal Electronic energy + Delta-G solvation = -21486.974000 eV Core-core repulsion = 17938.900925 eV Total energy + Delta-G solvation = -3548.073075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.95454 -40.39887 -38.92302 -36.51482 -35.31700 -33.39306 -32.84698 -30.70201 -30.16925 -29.01736 -26.61104 -24.18088 -23.07828 -22.49438 -22.05989 -20.74784 -18.96705 -18.50899 -17.26111 -17.00327 -16.58093 -16.40524 -15.99974 -15.89484 -15.28793 -14.47245 -14.30299 -13.71086 -13.46577 -13.32701 -13.30041 -12.99108 -12.95060 -12.62630 -12.15893 -12.06426 -11.65136 -11.24304 -11.05398 -10.95301 -10.89957 -10.64721 -10.53913 -10.38887 -10.14978 -9.66570 -9.07780 -9.01567 -8.44998 -7.76348 -6.06096 -4.10960 0.62908 1.99283 2.08386 2.69717 2.77099 3.23635 3.30066 3.36954 3.42075 3.85251 4.42606 4.48095 4.54162 4.72625 4.83456 5.07619 5.17539 5.25251 5.28636 5.34963 5.41493 5.54222 5.57742 5.72284 5.95046 5.98123 6.13166 6.18654 6.44138 6.55453 6.98517 7.39092 7.44824 7.52984 7.89990 8.19932 8.28241 8.83694 8.98490 9.54095 11.02086 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.003819 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.393334 B = 7329.928467 C = 8147.120646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.517 6.517 15 C 0.049 3.951 16 O -0.317 6.317 17 C 0.551 3.449 18 O -0.491 6.491 19 C -0.060 4.060 20 C -0.109 4.109 21 C -0.232 4.232 22 C 0.009 3.991 23 O -0.144 6.144 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 -3.703 19.778 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.392 6.392 15 C -0.028 4.028 16 O -0.231 6.231 17 C 0.395 3.605 18 O -0.381 6.381 19 C -0.110 4.110 20 C -0.128 4.128 21 C -0.251 4.251 22 C -0.062 4.062 23 O -0.038 6.038 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.182 0.818 35 H 0.178 0.822 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.331 -3.157 19.281 20.012 hybrid contribution 0.893 -0.388 -0.195 0.993 sum -3.438 -3.545 19.086 19.715 Atomic orbital electron populations 1.22238 0.96510 1.01716 1.02443 1.21518 0.93777 0.83923 1.03074 1.48208 1.63845 1.13415 1.07066 1.19334 0.96483 0.93725 0.77509 1.21433 0.96877 1.32104 1.06360 0.92365 1.24935 0.97940 0.94839 0.96356 1.69935 1.35731 1.33319 1.14317 0.86477 0.84564 0.77679 0.78599 1.20623 1.21056 1.19864 1.19664 0.79851 0.87175 0.84232 1.90732 1.44320 1.17471 1.86665 1.23080 1.02982 0.92588 0.84137 1.86732 1.78176 1.44470 1.13741 1.19245 0.74735 0.84304 0.82197 1.90936 1.43206 1.17589 1.86398 1.20747 1.12070 0.84871 0.93321 1.21996 0.99753 1.00901 0.90180 1.21869 1.08218 0.93553 1.01457 1.24623 1.00622 1.00557 0.80419 1.84252 1.63634 1.25453 1.30413 0.93121 0.91765 0.91865 0.89364 0.91717 0.94587 0.93688 0.92668 0.88286 0.88368 0.81770 0.82182 0.76928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.10 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.59 -12.45 2.46 -175.07 -0.43 -12.88 16 4 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 5 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.51 10.88 7.75 -10.98 -0.09 10.80 16 14 O -0.52 -13.59 16.08 -14.11 -0.23 -13.82 16 15 C 0.05 0.82 4.51 36.01 0.16 0.98 16 16 O -0.32 -5.65 9.77 -48.35 -0.47 -6.13 16 17 C 0.55 8.52 7.93 34.05 0.27 8.79 16 18 O -0.49 -7.77 16.66 -19.36 -0.32 -8.10 16 19 C -0.06 -0.80 7.18 -36.84 -0.26 -1.06 16 20 C -0.11 -1.12 10.62 -39.38 -0.42 -1.53 16 21 C -0.23 -1.83 10.87 -39.90 -0.43 -2.27 16 22 C 0.01 0.07 12.08 29.64 0.36 0.43 16 23 O -0.14 -1.87 10.67 4.72 0.05 -1.82 16 24 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 28 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 29 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.10 1.45 7.40 -51.93 -0.38 1.06 16 33 H 0.10 1.38 7.18 -51.93 -0.37 1.01 16 34 H 0.16 1.41 8.06 -52.48 -0.42 0.98 16 35 H 0.16 0.77 8.06 -52.48 -0.42 0.34 16 36 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -35.38 325.28 -5.64 -41.02 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.35 Total: -2.89 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -0.50 Total: 8.61 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.31 Total: -38.63 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.97 Total: -29.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.38 -5.64 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060797201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.045 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds