Wall clock time and date at job start Fri Apr 10 2020 14:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.46808 * 2 1 4 4 C 1.46501 * 120.00060 * 270.00353 * 3 2 1 5 5 C 1.50699 * 109.46742 * 269.99561 * 4 3 2 6 6 H 1.07997 * 120.00405 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00296 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99467 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00532 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47082 * 90.00237 * 9 7 5 11 11 H 1.48495 * 109.47200 * 210.00426 * 9 7 5 12 12 H 1.48500 * 109.47169 * 330.00358 * 9 7 5 13 13 C 1.34776 * 120.00079 * 89.99741 * 3 2 1 14 14 O 1.21283 * 120.00109 * 179.97438 * 13 3 2 15 15 C 1.50709 * 119.99950 * 0.02562 * 13 3 2 16 16 O 1.45200 * 109.46889 * 179.97438 * 15 13 3 17 17 C 1.34895 * 116.99402 * 179.97438 * 16 15 13 18 18 O 1.21622 * 120.00358 * 359.97438 * 17 16 15 19 19 C 1.46470 * 119.99835 * 179.97438 * 17 16 15 20 20 C 1.36644 * 125.99901 * 180.02562 * 19 17 16 21 21 C 1.40309 * 106.70356 * 180.02562 * 20 19 17 22 22 C 1.35164 * 107.12857 * 359.97438 * 21 20 19 23 23 O 1.33914 * 108.78284 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47501 * 299.99762 * 1 2 3 25 25 H 1.08998 * 109.47509 * 60.00289 * 1 2 3 26 26 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47062 * 240.00394 * 2 1 3 28 28 H 1.08994 * 109.47068 * 119.99551 * 2 1 3 29 29 H 1.08994 * 109.47495 * 29.99529 * 4 3 2 30 30 H 1.08998 * 109.47248 * 149.99903 * 4 3 2 31 31 H 0.97004 * 119.99510 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.46691 * 59.99376 * 15 13 3 33 33 H 1.09003 * 109.46594 * 299.99510 * 15 13 3 34 34 H 1.08003 * 126.64401 * 0.02562 * 20 19 17 35 35 H 1.08004 * 126.43398 * 180.02562 * 21 20 19 36 36 H 1.07999 * 125.61053 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2623 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7037 6 1 4.3425 1.2305 -1.0962 7 6 4.1490 2.3898 -2.8779 8 7 3.3488 3.1259 -3.6180 9 14 5.9130 2.0959 -3.4175 10 1 5.9759 0.8748 -4.2602 11 1 6.3920 3.2630 -4.2007 12 1 6.7733 1.9162 -2.2206 13 6 2.2428 2.0166 1.1672 14 8 2.6474 3.1600 1.1672 15 6 1.9921 1.3060 2.4724 16 8 2.3070 2.1955 3.5760 17 6 2.1351 1.7093 4.8225 18 8 1.7325 0.5728 4.9818 19 6 2.4334 2.5502 5.9841 20 6 2.3048 2.1846 7.2944 21 6 2.6965 3.2918 8.0622 22 6 3.0433 4.2723 7.1989 23 8 2.8844 3.8215 5.9480 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.5816 1.6878 -2.0284 30 1 2.0953 3.1411 -1.1384 31 1 3.6749 3.5164 -4.4440 32 1 2.6227 0.4188 2.5298 33 1 0.9442 1.0115 2.5302 34 1 1.9671 1.2288 7.6668 35 1 2.7177 3.3493 9.1405 36 1 3.3921 5.2570 7.4729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060797201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:39 Heat of formation + Delta-G solvation = -119.108509 kcal Electronic energy + Delta-G solvation = -21487.973345 eV Core-core repulsion = 17938.900925 eV Total energy + Delta-G solvation = -3549.072420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.75163 -41.66859 -40.52981 -37.77718 -37.01328 -34.94989 -34.16636 -31.86716 -31.51320 -30.41526 -28.42134 -25.42649 -24.64112 -24.01444 -22.81284 -21.72896 -20.36041 -19.72596 -18.66309 -18.43493 -18.09418 -17.84808 -17.27521 -17.06041 -16.78697 -16.19882 -15.90060 -14.95578 -14.74340 -14.57814 -14.31951 -14.01147 -13.96475 -13.92183 -13.63896 -13.60112 -13.29496 -13.09020 -12.69031 -12.51797 -12.26097 -12.19937 -12.10527 -11.84083 -11.73709 -11.12782 -10.77750 -10.65052 -9.84701 -9.56847 -8.24246 -6.38854 -0.28724 1.00252 1.27063 1.36354 1.39641 1.49497 1.58048 1.74263 1.84897 2.33266 2.45673 3.05832 3.38248 3.55896 3.84792 3.87200 3.92746 4.01714 4.14202 4.37646 4.47464 4.58830 4.79887 4.85900 4.87797 4.94194 4.99928 5.02742 5.18799 5.33683 5.36321 5.52856 5.77247 5.80471 6.02942 6.37541 6.58977 6.70179 7.18749 7.34825 8.83318 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.003819 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.393334 B = 7329.928467 C = 8147.120646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.498 3.502 14 O -0.579 6.579 15 C 0.061 3.939 16 O -0.345 6.345 17 C 0.551 3.449 18 O -0.503 6.503 19 C -0.112 4.112 20 C -0.089 4.089 21 C -0.229 4.229 22 C 0.020 3.980 23 O -0.177 6.177 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.031 0.969 30 H -0.002 1.002 31 H 0.268 0.732 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.180 0.820 35 H 0.198 0.802 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 -5.108 22.077 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.285 3.715 14 O -0.459 6.459 15 C -0.015 4.015 16 O -0.261 6.261 17 C 0.397 3.603 18 O -0.394 6.394 19 C -0.161 4.161 20 C -0.109 4.109 21 C -0.248 4.248 22 C -0.050 4.050 23 O -0.073 6.073 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.049 0.951 30 H 0.017 0.983 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.197 0.803 35 H 0.215 0.785 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -3.928 -4.627 21.597 22.434 hybrid contribution 0.731 0.110 -0.780 1.075 sum -3.197 -4.518 20.817 21.540 Atomic orbital electron populations 1.22183 0.94262 1.03870 1.01851 1.21898 0.95619 0.80838 1.04555 1.48207 1.63505 1.15320 1.05547 1.18795 0.95641 0.91631 0.79717 1.21713 0.97849 1.32300 1.06678 0.92733 1.25860 1.02471 0.94370 0.96375 1.70053 1.37803 1.34037 1.14780 0.85394 0.78844 0.78266 0.78176 1.18640 1.20600 1.19904 1.20524 0.78428 0.86643 0.85871 1.90690 1.47155 1.20298 1.87747 1.22958 1.05213 0.91905 0.81414 1.86721 1.78942 1.45507 1.14906 1.19547 0.74305 0.84651 0.81752 1.90900 1.44156 1.17955 1.86383 1.20698 1.16228 0.85728 0.93429 1.22397 0.97316 1.02018 0.89177 1.22321 1.07213 0.92167 1.03068 1.25638 0.98270 1.02095 0.78978 1.84228 1.64552 1.25606 1.32890 0.92412 0.93712 0.88242 0.89868 0.88235 0.95089 0.98341 0.92325 0.85830 0.85392 0.80268 0.78524 0.72895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 10.24 71.98 0.74 -3.28 16 2 C 0.09 2.79 5.93 86.38 0.51 3.31 16 3 N -0.59 -25.55 2.46 -826.17 -2.03 -27.58 16 4 C 0.26 14.31 5.16 85.63 0.44 14.75 16 5 C -0.55 -31.83 9.39 25.60 0.24 -31.59 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.49 5.46 84.65 0.46 0.95 16 8 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 9 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 13 C 0.50 22.05 7.75 87.66 0.68 22.73 16 14 O -0.58 -32.26 16.08 15.76 0.25 -32.01 16 15 C 0.06 2.01 4.51 71.24 0.32 2.33 16 16 O -0.35 -12.56 9.77 -51.09 -0.50 -13.06 16 17 C 0.55 17.05 7.93 69.97 0.55 17.60 16 18 O -0.50 -15.46 16.66 19.44 0.32 -15.13 16 19 C -0.11 -2.94 7.18 24.04 0.17 -2.77 16 20 C -0.09 -1.66 10.62 22.40 0.24 -1.42 16 21 C -0.23 -2.85 10.87 22.07 0.24 -2.61 16 22 C 0.02 0.28 12.08 67.11 0.81 1.09 16 23 O -0.18 -4.55 10.67 -4.95 -0.05 -4.60 16 24 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 27 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 28 H 0.10 2.33 6.44 -2.39 -0.02 2.31 16 29 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 30 H 0.00 -0.10 7.42 -2.39 -0.02 -0.11 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.12 3.40 7.40 -2.39 -0.02 3.38 16 33 H 0.13 3.37 7.18 -2.39 -0.02 3.36 16 34 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.26 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -82.12 325.28 6.81 -75.31 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.09 Total: 4.76 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 5.41 Total: 21.10 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -1.74 Total: -83.66 kcal Atomic # 8 Polarization: -64.82 SS G_CDS: 0.03 Total: -64.80 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -82.12 6.81 -75.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060797201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.797 kcal (2) G-P(sol) polarization free energy of solvation -82.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds