Wall clock time and date at job start Fri Apr 10 2020 14:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.50701 * 109.47310 * 89.99973 * 4 3 2 6 6 H 1.07997 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99877 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47093 * 60.00167 * 9 7 5 11 11 H 1.48503 * 109.47145 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47483 * 300.00005 * 9 7 5 13 13 C 1.38556 * 120.00235 * 270.00364 * 3 2 1 14 14 C 1.39559 * 120.52174 * 4.99886 * 13 3 2 15 15 C 1.38274 * 118.32381 * 180.02562 * 14 13 3 16 16 Cl 1.73602 * 120.42095 * 179.97438 * 15 14 13 17 17 N 1.32696 * 119.16681 * 359.97438 * 15 14 13 18 18 C 1.31754 * 120.98806 * 0.02562 * 17 15 14 19 19 C 1.50700 * 119.07822 * 179.97438 * 18 17 15 20 20 C 1.52995 * 117.49871 * 8.75228 * 19 18 17 21 21 C 1.52998 * 117.49796 * 300.09035 * 19 18 17 22 22 N 1.31776 * 121.84296 * 359.71659 * 18 17 15 23 23 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 28 28 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 29 29 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 30 30 H 0.97000 * 119.99433 * 179.97438 * 8 7 5 31 31 H 1.07994 * 120.84034 * 359.97438 * 14 13 3 32 32 H 1.09006 * 115.54523 * 154.41639 * 19 18 17 33 33 H 1.09003 * 117.49906 * 359.97438 * 20 19 18 34 34 H 1.08997 * 117.50250 * 145.02248 * 20 19 18 35 35 H 1.09005 * 117.49338 * 214.97972 * 21 19 18 36 36 H 1.08998 * 117.49895 * 359.97132 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2303 1.0961 7 6 4.1494 2.3904 2.8775 8 7 3.3496 3.1272 3.6172 9 14 5.9134 2.0963 3.4170 10 1 6.8413 2.6188 2.3819 11 1 6.1614 2.7974 4.7024 12 1 6.1403 0.6397 3.5953 13 6 2.2491 2.0345 -1.1999 14 6 1.9227 1.4257 -2.4126 15 6 2.1730 2.1185 -3.5827 16 17 1.7890 1.4126 -5.1216 17 7 2.7105 3.3298 -3.5148 18 6 3.0069 3.8762 -2.3531 19 6 3.6166 5.2541 -2.3261 20 6 3.6701 6.0289 -3.6443 21 6 4.9535 5.4493 -3.0441 22 7 2.7806 3.2536 -1.2140 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.0955 3.1410 1.1385 29 1 1.5818 1.6876 2.0284 30 1 3.6757 3.5176 4.4431 31 1 1.4864 0.4381 -2.4365 32 1 3.4474 5.8252 -1.4131 33 1 3.2647 5.5418 -4.5312 34 1 3.5367 7.1097 -3.5986 35 1 5.6637 6.1491 -2.6036 36 1 5.3922 4.5810 -3.5355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126552178.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:19 Heat of formation + Delta-G solvation = 70.566127 kcal Electronic energy + Delta-G solvation = -19717.468625 eV Core-core repulsion = 16649.623030 eV Total energy + Delta-G solvation = -3067.845595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62288 -37.48610 -36.79875 -36.00014 -32.90212 -32.74875 -30.91949 -30.05197 -26.87196 -24.93780 -23.73784 -22.99705 -22.15196 -21.54204 -19.75675 -17.55569 -17.06165 -16.40211 -15.62043 -14.99913 -14.91067 -14.75803 -14.44637 -14.12026 -13.76093 -13.33145 -12.94676 -12.15465 -12.12108 -11.90647 -11.82773 -11.37361 -11.30751 -11.24808 -11.10154 -10.76044 -10.71526 -10.67436 -10.36496 -10.23283 -10.15863 -9.99959 -9.56039 -8.97961 -8.68956 -8.48050 -7.27690 -6.08871 -4.14527 1.30690 1.75938 1.88607 3.28070 3.32692 3.35125 3.49055 3.86846 4.25918 4.39474 4.44385 4.85438 5.10533 5.20407 5.23788 5.25596 5.30029 5.40002 5.51611 5.58824 5.71531 5.80445 5.82557 5.94577 5.99745 6.13653 6.31963 6.40942 6.42440 6.50892 6.88441 7.28569 7.39464 7.75352 7.95131 8.04910 8.15665 8.75873 8.89493 9.49926 10.97906 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.006284 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.381679 B = 4454.568947 C = 5864.440941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.116 3.884 3 N -0.565 5.565 4 C 0.251 3.749 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.278 1.278 13 C 0.462 3.538 14 C -0.301 4.301 15 C 0.252 3.748 16 Cl -0.041 7.041 17 N -0.576 5.576 18 C 0.406 3.594 19 C -0.093 4.093 20 C -0.156 4.156 21 C -0.155 4.155 22 N -0.542 5.542 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 -1.519 -12.357 12.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.008 4.008 3 N -0.271 5.271 4 C 0.133 3.867 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.138 4.138 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.203 1.203 13 C 0.216 3.784 14 C -0.332 4.332 15 C 0.083 3.917 16 Cl -0.013 7.013 17 N -0.300 5.300 18 C 0.137 3.863 19 C -0.113 4.113 20 C -0.193 4.193 21 C -0.194 4.194 22 N -0.265 5.265 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.161 0.839 32 H 0.149 0.851 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.063 -0.757 -12.009 12.417 hybrid contribution 0.578 -1.165 0.299 1.335 sum -2.485 -1.922 -11.710 12.124 Atomic orbital electron populations 1.22224 0.96374 1.01705 1.02574 1.21486 0.93757 0.82501 1.03070 1.47311 1.63137 1.12352 1.04336 1.19412 0.96448 0.93641 0.77230 1.21327 0.96668 1.32013 1.06260 0.92667 1.24884 0.97724 0.94868 0.96306 1.69914 1.35695 1.33298 1.14377 0.86587 0.84884 0.78263 0.77858 1.20191 1.21143 1.20331 1.18429 0.86024 0.87657 0.86277 1.21742 1.15753 1.04584 0.91093 1.21314 0.93387 0.90534 0.86508 1.98375 1.91912 1.81467 1.29501 1.67326 1.20773 1.11575 1.30287 1.21635 0.89167 0.93874 0.81664 1.20596 1.01353 0.90917 0.98467 1.23002 1.00850 0.98982 0.96504 1.22939 0.90317 1.03294 1.02803 1.67882 1.19416 1.09284 1.29935 0.92752 0.91852 0.91954 0.89322 0.91406 0.93283 0.94880 0.92629 0.83865 0.85123 0.87329 0.88536 0.88146 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.12 1.84 5.78 -4.04 -0.02 1.82 16 3 N -0.57 -11.59 2.56 -175.05 -0.45 -12.04 16 4 C 0.25 6.22 5.16 -5.19 -0.03 6.20 16 5 C -0.52 -14.22 9.39 -34.44 -0.32 -14.55 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 9 Si 0.90 21.38 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.46 9.43 7.38 -154.78 -1.14 8.29 16 14 C -0.30 -5.19 9.02 -39.08 -0.35 -5.54 16 15 C 0.25 4.28 7.33 -17.16 -0.13 4.16 16 16 Cl -0.04 -0.57 29.15 -51.86 -1.51 -2.08 16 17 N -0.58 -10.40 9.34 -7.94 -0.07 -10.47 16 18 C 0.41 7.77 7.31 -157.24 -1.15 6.62 16 19 C -0.09 -1.50 6.23 -91.78 -0.57 -2.07 16 20 C -0.16 -1.99 10.01 -26.69 -0.27 -2.25 16 21 C -0.16 -2.10 10.24 -26.69 -0.27 -2.37 16 22 N -0.54 -11.83 9.21 -9.98 -0.09 -11.92 16 23 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.09 1.44 8.07 -51.93 -0.42 1.03 16 27 H 0.07 0.95 6.44 -51.93 -0.33 0.62 16 28 H 0.05 1.35 7.48 -51.93 -0.39 0.96 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.14 2.10 6.40 -52.49 -0.34 1.76 16 32 H 0.13 2.09 8.14 -51.93 -0.42 1.67 16 33 H 0.11 1.46 7.54 -51.93 -0.39 1.07 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -29.60 325.04 -10.28 -39.88 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.79 Total: 0.16 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -3.97 Total: 0.09 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.12 Total: -59.30 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.51 Total: -2.08 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.60 -10.28 -39.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126552178.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.443 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds