Wall clock time and date at job start Fri Apr 10 2020 14:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.50701 * 109.47310 * 89.99973 * 4 3 2 6 6 H 1.07997 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99877 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47093 * 60.00167 * 9 7 5 11 11 H 1.48503 * 109.47145 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47483 * 300.00005 * 9 7 5 13 13 C 1.38556 * 120.00235 * 270.00364 * 3 2 1 14 14 C 1.39559 * 120.52174 * 4.99886 * 13 3 2 15 15 C 1.38274 * 118.32381 * 180.02562 * 14 13 3 16 16 Cl 1.73602 * 120.42095 * 179.97438 * 15 14 13 17 17 N 1.32696 * 119.16681 * 359.97438 * 15 14 13 18 18 C 1.31754 * 120.98806 * 0.02562 * 17 15 14 19 19 C 1.50700 * 119.07822 * 179.97438 * 18 17 15 20 20 C 1.52995 * 117.49871 * 8.75228 * 19 18 17 21 21 C 1.52998 * 117.49796 * 300.09035 * 19 18 17 22 22 N 1.31776 * 121.84296 * 359.71659 * 18 17 15 23 23 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 28 28 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 29 29 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 30 30 H 0.97000 * 119.99433 * 179.97438 * 8 7 5 31 31 H 1.07994 * 120.84034 * 359.97438 * 14 13 3 32 32 H 1.09006 * 115.54523 * 154.41639 * 19 18 17 33 33 H 1.09003 * 117.49906 * 359.97438 * 20 19 18 34 34 H 1.08997 * 117.50250 * 145.02248 * 20 19 18 35 35 H 1.09005 * 117.49338 * 214.97972 * 21 19 18 36 36 H 1.08998 * 117.49895 * 359.97132 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2303 1.0961 7 6 4.1494 2.3904 2.8775 8 7 3.3496 3.1272 3.6172 9 14 5.9134 2.0963 3.4170 10 1 6.8413 2.6188 2.3819 11 1 6.1614 2.7974 4.7024 12 1 6.1403 0.6397 3.5953 13 6 2.2491 2.0345 -1.1999 14 6 1.9227 1.4257 -2.4126 15 6 2.1730 2.1185 -3.5827 16 17 1.7890 1.4126 -5.1216 17 7 2.7105 3.3298 -3.5148 18 6 3.0069 3.8762 -2.3531 19 6 3.6166 5.2541 -2.3261 20 6 3.6701 6.0289 -3.6443 21 6 4.9535 5.4493 -3.0441 22 7 2.7806 3.2536 -1.2140 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.0955 3.1410 1.1385 29 1 1.5818 1.6876 2.0284 30 1 3.6757 3.5176 4.4431 31 1 1.4864 0.4381 -2.4365 32 1 3.4474 5.8252 -1.4131 33 1 3.2647 5.5418 -4.5312 34 1 3.5367 7.1097 -3.5986 35 1 5.6637 6.1491 -2.6036 36 1 5.3922 4.5810 -3.5355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126552178.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:18 Heat of formation + Delta-G solvation = 55.675217 kcal Electronic energy + Delta-G solvation = -19718.114344 eV Core-core repulsion = 16649.623030 eV Total energy + Delta-G solvation = -3068.491313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.04813 -38.87641 -38.04606 -37.27660 -34.92757 -34.17696 -32.27089 -31.63683 -28.67867 -26.27746 -25.45896 -24.43716 -23.20721 -22.98598 -21.15087 -18.95636 -18.74397 -18.29705 -16.88684 -16.63989 -16.38592 -16.27318 -15.79842 -15.53004 -15.05347 -14.83847 -14.42056 -13.88097 -13.44206 -13.31157 -13.13211 -13.06771 -12.76274 -12.56656 -12.48841 -12.35986 -12.22737 -12.14113 -11.94176 -11.62509 -11.55248 -11.33332 -11.31079 -10.61610 -10.34441 -10.16825 -8.87581 -8.16508 -6.33041 -0.07677 0.29869 0.57726 1.37047 1.39616 1.47060 2.02494 2.39104 2.60535 2.94355 3.10298 3.14660 3.50444 3.84862 3.97522 4.01237 4.12197 4.18491 4.27606 4.34573 4.46745 4.59107 4.76487 4.80153 4.93183 4.96435 5.04131 5.11633 5.18948 5.29841 5.35093 5.37110 5.64808 5.81458 6.06980 6.27691 6.48955 6.76193 7.31141 7.37546 8.86420 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.006284 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.381679 B = 4454.568947 C = 5864.440941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.110 3.890 3 N -0.577 5.577 4 C 0.273 3.727 5 C -0.533 4.533 6 H 0.045 0.955 7 C 0.016 3.984 8 N -0.925 5.925 9 Si 0.959 3.041 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.266 1.266 13 C 0.442 3.558 14 C -0.291 4.291 15 C 0.244 3.756 16 Cl -0.006 7.006 17 N -0.574 5.574 18 C 0.395 3.605 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.146 4.146 22 N -0.588 5.588 23 H 0.055 0.945 24 H 0.097 0.903 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.013 0.987 29 H 0.020 0.980 30 H 0.266 0.734 31 H 0.172 0.828 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 -2.291 -14.090 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.012 4.012 3 N -0.284 5.284 4 C 0.152 3.848 5 C -0.571 4.571 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.565 5.565 9 Si 0.784 3.216 10 H -0.204 1.204 11 H -0.203 1.203 12 H -0.191 1.191 13 C 0.197 3.803 14 C -0.322 4.322 15 C 0.075 3.925 16 Cl 0.023 6.977 17 N -0.298 5.298 18 C 0.127 3.873 19 C -0.148 4.148 20 C -0.165 4.165 21 C -0.184 4.184 22 N -0.313 5.313 23 H 0.074 0.926 24 H 0.116 0.884 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.031 0.969 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.189 0.811 32 H 0.139 0.861 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.635 -1.553 -13.786 14.121 hybrid contribution 0.402 -0.929 0.707 1.235 sum -2.232 -2.482 -13.079 13.498 Atomic orbital electron populations 1.22143 0.94317 1.03640 1.01702 1.21752 0.95396 0.80227 1.03826 1.47216 1.64336 1.13807 1.03062 1.18787 0.95035 0.91939 0.79020 1.21543 0.97660 1.31694 1.06246 0.93623 1.25680 1.01660 0.94593 0.96412 1.70024 1.37499 1.34157 1.14792 0.85607 0.79905 0.78692 0.77425 1.20427 1.20343 1.19132 1.18756 0.86605 0.87835 0.87127 1.21879 1.15006 1.05430 0.89844 1.21656 0.92616 0.90268 0.87995 1.98385 1.91517 1.80789 1.27011 1.67460 1.20666 1.12036 1.29613 1.22150 0.88918 0.94815 0.81401 1.20725 1.03887 0.90250 0.99981 1.23074 0.99206 1.00105 0.94077 1.23031 0.90135 1.03380 1.01875 1.67871 1.21030 1.10618 1.31763 0.92557 0.88398 0.93855 0.90172 0.88964 0.96927 0.96246 0.92469 0.81105 0.86077 0.87791 0.85687 0.86090 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 10.24 71.98 0.74 -3.33 16 2 C 0.11 3.43 5.78 86.38 0.50 3.93 16 3 N -0.58 -24.15 2.56 -707.72 -1.81 -25.97 16 4 C 0.27 14.15 5.16 85.63 0.44 14.59 16 5 C -0.53 -29.76 9.39 25.60 0.24 -29.52 16 6 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 7 C 0.02 0.89 5.46 84.65 0.46 1.35 16 8 N -0.92 -54.33 13.29 21.45 0.28 -54.04 16 9 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.44 18.25 7.38 133.14 0.98 19.24 16 14 C -0.29 -9.70 9.02 22.60 0.20 -9.50 16 15 C 0.24 7.94 7.33 84.57 0.62 8.56 16 16 Cl -0.01 -0.14 29.15 -2.72 -0.08 -0.22 16 17 N -0.57 -20.32 9.34 -179.02 -1.67 -21.99 16 18 C 0.40 15.35 7.31 138.77 1.01 16.37 16 19 C -0.13 -4.13 6.23 -11.54 -0.07 -4.20 16 20 C -0.13 -3.02 10.01 30.62 0.31 -2.71 16 21 C -0.15 -3.77 10.24 30.62 0.31 -3.46 16 22 N -0.59 -26.55 9.21 -185.48 -1.71 -28.25 16 23 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 24 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 27 H 0.09 2.39 6.44 -2.39 -0.02 2.38 16 28 H 0.01 0.74 7.48 -2.39 -0.02 0.72 16 29 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 30 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.17 4.55 6.40 -2.91 -0.02 4.53 16 32 H 0.12 4.04 8.14 -2.38 -0.02 4.02 16 33 H 0.10 2.60 7.54 -2.39 -0.02 2.58 16 34 H 0.13 2.25 8.14 -2.39 -0.02 2.24 16 35 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -65.68 325.04 3.87 -61.80 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.08 Total: 11.12 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 5.75 Total: 11.32 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -4.91 Total: -130.26 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -65.68 3.87 -61.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126552178.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.478 kcal (2) G-P(sol) polarization free energy of solvation -65.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds