Wall clock time and date at job start Fri Apr 10 2020 14:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46810 * 2 1 4 4 C 1.46500 * 120.00600 * 88.56605 * 3 2 1 5 5 C 1.50692 * 109.47149 * 94.65731 * 4 3 2 6 6 H 1.08001 * 120.00260 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00165 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99720 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00646 * 180.02562 * 7 5 4 10 10 H 1.48511 * 109.46778 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47752 * 119.99834 * 9 7 5 12 12 H 1.48502 * 109.47567 * 240.00450 * 9 7 5 13 13 C 1.34785 * 119.99692 * 268.56008 * 3 2 1 14 14 O 1.21604 * 119.99961 * 5.38074 * 13 3 2 15 15 C 1.47325 * 120.00001 * 185.37375 * 13 3 2 16 16 C 1.36572 * 125.79702 * 185.80507 * 15 13 3 17 17 C 1.40046 * 106.93382 * 179.97438 * 16 15 13 18 18 C 1.36638 * 106.91647 * 0.02562 * 17 16 15 19 19 C 1.47137 * 125.81145 * 179.97438 * 18 17 16 20 20 O 1.21533 * 120.00426 * 359.97438 * 19 18 17 21 21 O 1.34822 * 119.99881 * 179.97438 * 19 18 17 22 22 C 1.45200 * 116.99826 * 179.97438 * 21 19 18 23 23 O 1.34530 * 125.79751 * 5.50583 * 15 13 3 24 24 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46883 * 300.00099 * 1 2 3 26 26 H 1.08995 * 109.47381 * 60.00395 * 1 2 3 27 27 H 1.08998 * 109.47233 * 239.99854 * 2 1 3 28 28 H 1.08995 * 109.47381 * 119.99605 * 2 1 3 29 29 H 1.08998 * 109.47244 * 214.66793 * 4 3 2 30 30 H 1.09009 * 109.46480 * 334.66252 * 4 3 2 31 31 H 0.96999 * 119.99714 * 180.02562 * 8 7 5 32 32 H 1.07999 * 126.53484 * 359.97144 * 16 15 13 33 33 H 1.07998 * 126.54179 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47293 * 299.99505 * 22 21 19 35 35 H 1.09002 * 109.47470 * 60.00263 * 22 21 19 36 36 H 1.09007 * 109.46836 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2325 2.0826 1.2682 5 6 3.6753 1.9450 1.6809 6 1 4.3640 1.3909 1.0603 7 6 4.1163 2.5264 2.8507 8 7 3.2775 3.2007 3.6067 9 14 5.9048 2.3565 3.3620 10 1 6.6357 1.5556 2.3472 11 1 6.5201 3.7040 3.4666 12 1 5.9807 1.6741 4.6787 13 6 2.2705 2.0068 -1.1669 14 8 2.0010 1.4614 -2.2199 15 6 2.8726 3.3514 -1.1668 16 6 3.0750 4.1362 -2.2661 17 6 3.6667 5.3232 -1.8166 18 6 3.8010 5.2121 -0.4613 19 6 4.3774 6.2285 0.4329 20 8 4.7859 7.2782 -0.0235 21 8 4.4524 5.9953 1.7587 22 6 5.0333 7.0422 2.5802 23 8 3.3113 4.0171 -0.0832 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.9886 3.1378 1.1456 30 1 1.5920 1.6485 2.0361 31 1 3.5878 3.6101 4.4295 32 1 2.8261 3.8886 -3.2874 33 1 3.9609 6.1656 -2.4250 34 1 6.0572 7.2311 2.2577 35 1 4.4454 7.9542 2.4761 36 1 5.0330 6.7273 3.6238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129665120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:24 Heat of formation + Delta-G solvation = -93.782907 kcal Electronic energy + Delta-G solvation = -22954.640445 eV Core-core repulsion = 19406.666225 eV Total energy + Delta-G solvation = -3547.974220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.35057 -39.87793 -38.96147 -36.22119 -35.48095 -32.77142 -32.65031 -31.05997 -29.74102 -27.50121 -27.04693 -24.56021 -23.11160 -22.66225 -21.27006 -20.44180 -19.18018 -17.92801 -16.93088 -16.69920 -16.56425 -16.20663 -15.67580 -15.38822 -14.57354 -14.20607 -13.96066 -13.64588 -13.00945 -12.99351 -12.94461 -12.80923 -12.59980 -12.42946 -12.01762 -11.87650 -11.67635 -11.28768 -10.95001 -10.78346 -10.62698 -10.54078 -10.51710 -10.14170 -9.78603 -9.71889 -9.60512 -8.51570 -8.45599 -7.85497 -6.11338 -4.15531 0.96818 2.15074 2.62206 3.16825 3.22702 3.25319 3.31789 3.37184 3.68650 3.80265 4.38416 4.93069 5.12148 5.19967 5.25528 5.32613 5.40280 5.53193 5.70480 5.73408 5.79807 5.80798 5.90907 6.01889 6.16791 6.31700 6.49531 6.50335 6.56392 6.65063 7.09686 7.22648 7.44136 7.79818 7.93914 8.07618 8.09631 8.62699 8.87503 9.49955 10.96515 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.008845 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.706191 B = 3164.885160 C = 4666.164502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.579 5.579 4 C 0.234 3.766 5 C -0.532 4.532 6 H 0.057 0.943 7 C 0.080 3.920 8 N -0.879 5.879 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.591 3.409 14 O -0.549 6.549 15 C -0.003 4.003 16 C -0.167 4.167 17 C -0.132 4.132 18 C -0.048 4.048 19 C 0.554 3.446 20 O -0.503 6.503 21 O -0.316 6.316 22 C 0.039 3.961 23 O -0.073 6.073 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.262 0.738 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 2.916 -3.832 4.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.308 5.308 4 C 0.115 3.885 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.124 4.124 8 N -0.516 5.516 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.210 1.210 13 C 0.378 3.622 14 O -0.430 6.430 15 C -0.059 4.059 16 C -0.187 4.187 17 C -0.151 4.151 18 C -0.102 4.102 19 C 0.399 3.601 20 O -0.394 6.394 21 O -0.231 6.231 22 C -0.055 4.055 23 O 0.036 5.964 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.956 2.917 -3.889 4.954 hybrid contribution 1.214 0.285 0.479 1.336 sum 0.258 3.201 -3.410 4.684 Atomic orbital electron populations 1.22118 0.96394 1.01537 1.02237 1.21362 0.93815 0.82654 1.02939 1.48321 1.60978 1.13772 1.07752 1.19674 0.97649 0.92576 0.78637 1.21293 0.94168 1.34660 1.06967 0.92460 1.24730 0.97181 0.94465 0.96021 1.69908 1.34368 1.33737 1.13622 0.86630 0.85573 0.78001 0.78411 1.19900 1.20674 1.21043 1.16789 0.78609 0.82428 0.84411 1.90759 1.55352 1.65400 1.31531 1.22641 1.02800 0.95124 0.85374 1.21787 1.03844 0.93202 0.99896 1.21795 1.01380 0.99707 0.92249 1.21095 1.08280 0.88027 0.92820 1.19440 0.75147 0.83791 0.81701 1.90860 1.46225 1.25059 1.77259 1.86917 1.73476 1.45080 1.17581 1.23299 0.97934 0.89737 0.94571 1.84933 1.56237 1.22921 1.32276 0.92111 0.92372 0.92598 0.90734 0.89926 0.93680 0.94082 0.92821 0.81852 0.81971 0.92116 0.91912 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.12 2.01 6.08 -4.04 -0.02 1.99 16 3 N -0.58 -12.11 2.47 -176.37 -0.44 -12.54 16 4 C 0.23 5.50 4.75 -5.20 -0.02 5.47 16 5 C -0.53 -13.65 7.84 -34.44 -0.27 -13.92 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 8 N -0.88 -23.36 13.29 55.43 0.74 -22.63 16 9 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.59 12.52 7.61 -12.56 -0.10 12.42 16 14 O -0.55 -11.93 16.48 5.27 0.09 -11.84 16 15 C 0.00 -0.05 6.67 -36.49 -0.24 -0.30 16 16 C -0.17 -2.86 10.60 -39.51 -0.42 -3.28 16 17 C -0.13 -2.18 10.60 -39.48 -0.42 -2.60 16 18 C -0.05 -0.95 7.19 -36.55 -0.26 -1.21 16 19 C 0.55 10.78 7.95 34.34 0.27 11.05 16 20 O -0.50 -9.63 16.65 -19.29 -0.32 -9.95 16 21 O -0.32 -6.33 10.58 -42.25 -0.45 -6.78 16 22 C 0.04 0.58 10.57 101.05 1.07 1.64 16 23 O -0.07 -1.60 6.40 4.14 0.03 -1.57 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.28 7.46 -51.93 -0.39 0.89 16 28 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 29 H 0.05 1.14 5.91 -51.93 -0.31 0.83 16 30 H 0.04 1.00 8.04 -51.92 -0.42 0.58 16 31 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.16 2.40 8.06 -52.49 -0.42 1.97 16 33 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 322.83 15.07 4.87 4.87 Total: -1.00 -29.34 322.83 -5.10 -34.44 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.46 Total: -0.68 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -0.13 Total: 11.16 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.30 Total: -35.17 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.65 Total: -30.14 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.34 -5.10 -34.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129665120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.345 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds