Wall clock time and date at job start Fri Apr 10 2020 14:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46810 * 2 1 4 4 C 1.46500 * 120.00600 * 88.56605 * 3 2 1 5 5 C 1.50692 * 109.47149 * 94.65731 * 4 3 2 6 6 H 1.08001 * 120.00260 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00165 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99720 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00646 * 180.02562 * 7 5 4 10 10 H 1.48511 * 109.46778 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47752 * 119.99834 * 9 7 5 12 12 H 1.48502 * 109.47567 * 240.00450 * 9 7 5 13 13 C 1.34785 * 119.99692 * 268.56008 * 3 2 1 14 14 O 1.21604 * 119.99961 * 5.38074 * 13 3 2 15 15 C 1.47325 * 120.00001 * 185.37375 * 13 3 2 16 16 C 1.36572 * 125.79702 * 185.80507 * 15 13 3 17 17 C 1.40046 * 106.93382 * 179.97438 * 16 15 13 18 18 C 1.36638 * 106.91647 * 0.02562 * 17 16 15 19 19 C 1.47137 * 125.81145 * 179.97438 * 18 17 16 20 20 O 1.21533 * 120.00426 * 359.97438 * 19 18 17 21 21 O 1.34822 * 119.99881 * 179.97438 * 19 18 17 22 22 C 1.45200 * 116.99826 * 179.97438 * 21 19 18 23 23 O 1.34530 * 125.79751 * 5.50583 * 15 13 3 24 24 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46883 * 300.00099 * 1 2 3 26 26 H 1.08995 * 109.47381 * 60.00395 * 1 2 3 27 27 H 1.08998 * 109.47233 * 239.99854 * 2 1 3 28 28 H 1.08995 * 109.47381 * 119.99605 * 2 1 3 29 29 H 1.08998 * 109.47244 * 214.66793 * 4 3 2 30 30 H 1.09009 * 109.46480 * 334.66252 * 4 3 2 31 31 H 0.96999 * 119.99714 * 180.02562 * 8 7 5 32 32 H 1.07999 * 126.53484 * 359.97144 * 16 15 13 33 33 H 1.07998 * 126.54179 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47293 * 299.99505 * 22 21 19 35 35 H 1.09002 * 109.47470 * 60.00263 * 22 21 19 36 36 H 1.09007 * 109.46836 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2325 2.0826 1.2682 5 6 3.6753 1.9450 1.6809 6 1 4.3640 1.3909 1.0603 7 6 4.1163 2.5264 2.8507 8 7 3.2775 3.2007 3.6067 9 14 5.9048 2.3565 3.3620 10 1 6.6357 1.5556 2.3472 11 1 6.5201 3.7040 3.4666 12 1 5.9807 1.6741 4.6787 13 6 2.2705 2.0068 -1.1669 14 8 2.0010 1.4614 -2.2199 15 6 2.8726 3.3514 -1.1668 16 6 3.0750 4.1362 -2.2661 17 6 3.6667 5.3232 -1.8166 18 6 3.8010 5.2121 -0.4613 19 6 4.3774 6.2285 0.4329 20 8 4.7859 7.2782 -0.0235 21 8 4.4524 5.9953 1.7587 22 6 5.0333 7.0422 2.5802 23 8 3.3113 4.0171 -0.0832 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.9886 3.1378 1.1456 30 1 1.5920 1.6485 2.0361 31 1 3.5878 3.6101 4.4295 32 1 2.8261 3.8886 -3.2874 33 1 3.9609 6.1656 -2.4250 34 1 6.0572 7.2311 2.2577 35 1 4.4454 7.9542 2.4761 36 1 5.0330 6.7273 3.6238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129665120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:24 Heat of formation + Delta-G solvation = -110.393285 kcal Electronic energy + Delta-G solvation = -22955.360725 eV Core-core repulsion = 19406.666225 eV Total energy + Delta-G solvation = -3548.694500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.83115 -41.33348 -40.57538 -37.66856 -37.14026 -34.64869 -34.11714 -32.56032 -31.19340 -29.02158 -28.66041 -26.00726 -24.96207 -24.08542 -22.70337 -21.91249 -20.71162 -19.40039 -18.70736 -18.31519 -18.07183 -17.79382 -17.27337 -16.92095 -16.40454 -15.78315 -15.47619 -15.03077 -14.48363 -14.36536 -14.31576 -14.27725 -14.14432 -14.07961 -13.53671 -13.15739 -13.11083 -13.04978 -12.68920 -12.56885 -12.15807 -12.07413 -11.86452 -11.81515 -11.67787 -11.27716 -11.12318 -10.47374 -10.00311 -9.52733 -8.09917 -6.19427 -0.53208 0.71148 1.22457 1.39193 1.42519 1.50400 1.72714 1.81882 2.09896 2.25969 2.47972 3.24069 3.41235 3.78661 3.79661 4.17066 4.18100 4.28256 4.37690 4.39539 4.45039 4.54212 4.61961 4.73420 4.78539 4.97147 5.03997 5.10295 5.17898 5.22931 5.34955 5.57904 5.74196 5.85729 6.11713 6.37023 6.50696 6.83374 7.03707 7.48617 8.97569 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.008845 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.706191 B = 3164.885160 C = 4666.164502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.108 3.892 3 N -0.585 5.585 4 C 0.254 3.746 5 C -0.537 4.537 6 H 0.042 0.958 7 C 0.047 3.953 8 N -0.900 5.900 9 Si 0.931 3.069 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.277 1.277 13 C 0.587 3.413 14 O -0.559 6.559 15 C -0.038 4.038 16 C -0.144 4.144 17 C -0.107 4.107 18 C -0.074 4.074 19 C 0.554 3.446 20 O -0.504 6.504 21 O -0.346 6.346 22 C 0.030 3.970 23 O -0.104 6.104 24 H 0.092 0.908 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.028 0.972 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.192 0.808 33 H 0.198 0.802 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.525 3.286 -4.600 5.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 N -0.314 5.314 4 C 0.133 3.867 5 C -0.575 4.575 6 H 0.060 0.940 7 C -0.155 4.155 8 N -0.538 5.538 9 Si 0.758 3.242 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.203 1.203 13 C 0.375 3.625 14 O -0.442 6.442 15 C -0.093 4.093 16 C -0.164 4.164 17 C -0.126 4.126 18 C -0.127 4.127 19 C 0.400 3.600 20 O -0.396 6.396 21 O -0.261 6.261 22 C -0.063 4.063 23 O 0.003 5.997 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.209 0.791 33 H 0.215 0.785 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.576 3.278 -4.656 5.724 hybrid contribution 1.099 0.200 0.695 1.315 sum 0.523 3.478 -3.961 5.298 Atomic orbital electron populations 1.22031 0.94277 1.03423 1.01468 1.21598 0.95576 0.81032 1.03201 1.48347 1.61255 1.14886 1.06892 1.19231 0.96286 0.91761 0.79393 1.21335 0.94866 1.34434 1.06858 0.94001 1.25240 0.99967 0.94231 0.96069 1.69970 1.35624 1.34233 1.13956 0.85928 0.82137 0.78124 0.78038 1.20524 1.19921 1.20295 1.16952 0.78425 0.82890 0.84246 1.90734 1.56017 1.65916 1.31501 1.22781 1.04734 0.95559 0.86273 1.22165 1.01676 0.92331 1.00223 1.22197 0.99207 1.00112 0.91126 1.21522 1.09199 0.87770 0.94230 1.19449 0.75099 0.83790 0.81698 1.90839 1.46517 1.24988 1.77265 1.86884 1.73956 1.47126 1.18150 1.23607 0.98692 0.89475 0.94510 1.84863 1.57381 1.24029 1.33377 0.88894 0.92972 0.93412 0.90364 0.89701 0.95457 0.95226 0.92555 0.79071 0.78506 0.90945 0.90241 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 10.24 71.98 0.74 -3.71 16 2 C 0.11 3.73 6.08 86.38 0.53 4.25 16 3 N -0.59 -24.70 2.47 -830.16 -2.05 -26.75 16 4 C 0.25 12.20 4.75 85.63 0.41 12.60 16 5 C -0.54 -27.93 7.84 25.60 0.20 -27.73 16 6 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 7 C 0.05 2.46 5.46 84.65 0.46 2.92 16 8 N -0.90 -48.13 13.29 21.45 0.28 -47.85 16 9 Si 0.93 41.95 29.54 68.60 2.03 43.97 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.59 24.87 7.61 86.63 0.66 25.53 16 14 O -0.56 -23.93 16.48 -4.04 -0.07 -23.99 16 15 C -0.04 -1.53 6.67 24.27 0.16 -1.37 16 16 C -0.14 -4.63 10.60 22.32 0.24 -4.39 16 17 C -0.11 -3.30 10.60 22.33 0.24 -3.06 16 18 C -0.07 -2.86 7.19 24.23 0.17 -2.69 16 19 C 0.55 21.19 7.95 70.16 0.56 21.75 16 20 O -0.50 -18.58 16.65 19.73 0.33 -18.25 16 21 O -0.35 -13.78 10.58 -55.98 -0.59 -14.37 16 22 C 0.03 0.86 10.57 113.37 1.20 2.06 16 23 O -0.10 -4.60 6.40 -7.11 -0.05 -4.65 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 2.64 7.46 -2.39 -0.02 2.62 16 28 H 0.08 2.86 8.08 -2.39 -0.02 2.84 16 29 H 0.03 1.43 5.91 -2.39 -0.01 1.42 16 30 H 0.03 1.48 8.04 -2.38 -0.02 1.46 16 31 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 32 H 0.19 4.99 8.06 -2.91 -0.02 4.96 16 33 H 0.20 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 Total: -1.00 -62.39 322.83 6.54 -55.86 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.09 Total: 9.86 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: 5.56 Total: 26.17 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -1.76 Total: -74.59 kcal Atomic # 8 Polarization: -60.89 SS G_CDS: -0.38 Total: -61.26 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -62.39 6.54 -55.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129665120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.537 kcal (2) G-P(sol) polarization free energy of solvation -62.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds