Wall clock time and date at job start Fri Apr 10 2020 14:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50700 * 120.00077 * 2 1 4 4 C 1.53003 * 109.46801 * 294.99633 * 3 2 1 5 5 C 1.53006 * 109.47017 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.46978 * 180.02562 * 5 4 3 7 7 H 1.07992 * 120.00235 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99520 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00202 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99563 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47143 * 60.00536 * 10 8 6 12 12 H 1.48506 * 109.47049 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47379 * 299.99844 * 10 8 6 14 14 N 1.28018 * 120.00068 * 179.97438 * 2 1 3 15 15 N 1.40097 * 119.99748 * 0.02562 * 14 2 1 16 16 C 1.39019 * 119.99905 * 180.02562 * 15 14 2 17 17 C 1.39105 * 119.70224 * 179.97438 * 16 15 14 18 18 C 1.38451 * 119.07628 * 179.71995 * 17 16 15 19 19 Cl 1.73609 * 120.75814 * 180.22848 * 18 17 16 20 20 C 1.39023 * 118.48228 * 0.25433 * 18 17 16 21 21 C 1.38000 * 119.31926 * 0.02562 * 20 18 17 22 22 N 1.31965 * 120.87169 * 359.97438 * 21 20 18 23 23 H 1.08993 * 109.46992 * 270.00380 * 1 2 3 24 24 H 1.08998 * 109.47006 * 30.00443 * 1 2 3 25 25 H 1.09001 * 109.46839 * 149.99797 * 1 2 3 26 26 H 1.09001 * 109.47417 * 54.99578 * 3 2 1 27 27 H 1.08997 * 109.47410 * 174.99727 * 3 2 1 28 28 H 1.08996 * 109.47465 * 299.99906 * 4 3 2 29 29 H 1.08999 * 109.47303 * 60.00367 * 4 3 2 30 30 H 1.08996 * 109.46897 * 300.00218 * 5 4 3 31 31 H 1.08999 * 109.46814 * 60.00031 * 5 4 3 32 32 H 0.97002 * 119.99846 * 180.02562 * 9 8 6 33 33 H 0.96997 * 120.00616 * 359.97438 * 15 14 2 34 34 H 1.08002 * 120.46262 * 0.02562 * 17 16 15 35 35 H 1.08004 * 120.34508 * 179.97438 * 20 18 17 36 36 H 1.08000 * 119.56532 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0515 -1.3074 5 6 2.7531 3.3763 -1.3078 6 6 2.4838 4.1117 -2.5952 7 1 1.8323 3.6775 -3.3390 8 6 3.0702 5.3385 -2.8239 9 7 3.8649 5.8665 -1.9188 10 14 2.7369 6.2498 -4.4202 11 1 1.2817 6.5196 -4.5416 12 1 3.4798 7.5357 -4.4205 13 1 3.1839 5.4191 -5.5671 14 7 2.1471 -1.1087 0.0005 15 7 1.4466 -2.3219 0.0005 16 6 2.1417 -3.5259 0.0016 17 6 1.4399 -4.7269 0.0021 18 6 2.1452 -5.9183 -0.0027 19 17 1.3136 -7.4423 -0.0082 20 6 3.5344 -5.8663 -0.0025 21 6 4.1647 -4.6387 0.0030 22 7 3.4664 -3.5190 0.0075 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.9317 1.9146 0.8418 27 1 3.3288 1.1079 0.0896 28 1 2.3164 1.4421 -2.1492 29 1 0.9194 2.2488 -1.3970 30 1 2.4247 3.9858 -0.4660 31 1 3.8213 3.1786 -1.2184 32 1 4.2771 6.7297 -2.0796 33 1 0.4766 -2.3220 0.0005 34 1 0.3599 -4.7300 0.0013 35 1 4.1145 -6.7773 -0.0058 36 1 5.2438 -4.5937 0.0036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841634692.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:57 Heat of formation + Delta-G solvation = 55.891955 kcal Electronic energy + Delta-G solvation = -18172.336448 eV Core-core repulsion = 15103.854533 eV Total energy + Delta-G solvation = -3068.481915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.44646 -38.13719 -37.03499 -35.05708 -33.38287 -32.30244 -31.76531 -29.74926 -28.16941 -27.12975 -24.02574 -23.77150 -22.63334 -20.39578 -19.29260 -18.29656 -16.77293 -16.47775 -16.14695 -15.83528 -15.01436 -14.93696 -14.50580 -14.13111 -13.96758 -13.84766 -13.54415 -12.81829 -12.61104 -12.38721 -12.06962 -11.84616 -11.73922 -11.42355 -11.35134 -10.80928 -10.75370 -10.56021 -10.03099 -9.84644 -9.74793 -9.66498 -9.60742 -9.31537 -9.07147 -8.32930 -7.86770 -5.98290 -4.00585 0.82989 0.92270 1.56552 2.32295 2.52506 3.34297 3.38829 3.41189 3.62340 4.12563 4.47113 4.60633 4.64941 4.73025 4.74216 5.02482 5.22630 5.28242 5.36981 5.37548 5.46634 5.70874 5.85156 5.86861 6.02051 6.05834 6.26819 6.47602 6.72198 6.84714 6.90609 7.11258 7.68995 7.74451 7.83910 8.01827 8.35405 8.43963 9.06235 9.63237 11.12953 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.033944 B = 0.002438 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.688700 B =11481.154652 C =11645.133642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.106 3.894 3 C -0.063 4.063 4 C -0.102 4.102 5 C 0.021 3.979 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.236 5.236 15 N -0.574 5.574 16 C 0.437 3.563 17 C -0.233 4.233 18 C 0.049 3.951 19 Cl -0.057 7.057 20 C -0.227 4.227 21 C 0.163 3.837 22 N -0.502 5.502 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.393 0.607 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.011 -23.889 6.400 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.088 4.088 3 C -0.102 4.102 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.040 5.040 15 N -0.297 5.297 16 C 0.201 3.799 17 C -0.259 4.259 18 C 0.015 3.985 19 Cl -0.028 7.028 20 C -0.250 4.250 21 C 0.003 3.997 22 N -0.217 5.217 23 H 0.099 0.901 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.235 0.765 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.629 -23.468 6.449 24.774 hybrid contribution -1.991 -0.223 -0.923 2.205 sum -6.620 -23.691 5.526 25.212 Atomic orbital electron populations 1.21366 0.93477 1.03926 1.03210 1.25423 0.94328 0.94359 0.94683 1.20657 0.99991 0.88621 1.00953 1.21631 1.00591 0.98344 0.93567 1.19101 0.95427 0.89974 0.97073 1.21205 1.28411 1.03374 1.02952 0.92807 1.25019 0.95198 0.97570 0.96657 1.69950 1.31161 1.18023 1.34297 0.86675 0.78298 0.79035 0.84079 1.20293 1.21301 1.20270 1.74634 1.23845 0.90535 1.15020 1.45469 1.06360 1.00823 1.77038 1.17795 0.88443 0.83568 0.90064 1.21077 1.01258 0.90040 1.13547 1.20834 0.92617 0.86752 0.98334 1.98390 1.78490 1.29446 1.96521 1.21846 0.92622 1.00640 1.09938 1.22641 1.00320 0.85818 0.90901 1.67406 1.05758 1.31170 1.17397 0.90135 0.88866 0.92314 0.89850 0.90054 0.93148 0.93063 0.96409 0.96333 0.92948 0.76497 0.84200 0.83989 0.81565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.46 36.01 0.34 -1.39 16 2 C 0.11 1.53 6.55 -78.91 -0.52 1.01 16 3 C -0.06 -1.02 5.60 -27.88 -0.16 -1.18 16 4 C -0.10 -2.01 5.03 -26.73 -0.13 -2.15 16 5 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 6 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 10 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 N -0.24 -3.73 10.96 35.60 0.39 -3.34 16 15 N -0.57 -7.50 6.25 31.14 0.19 -7.31 16 16 C 0.44 5.70 7.59 -154.95 -1.18 4.52 16 17 C -0.23 -2.40 9.76 -39.18 -0.38 -2.79 16 18 C 0.05 0.48 6.37 -39.21 -0.25 0.23 16 19 Cl -0.06 -0.48 29.02 -51.86 -1.50 -1.99 16 20 C -0.23 -2.05 9.93 -39.38 -0.39 -2.44 16 21 C 0.16 1.70 11.17 -17.58 -0.20 1.51 16 22 N -0.50 -7.09 9.91 -12.43 -0.12 -7.21 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 1.02 6.91 -51.93 -0.36 0.66 16 25 H 0.06 0.55 6.31 -51.93 -0.33 0.22 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.94 7.01 -51.93 -0.36 0.58 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.39 3.97 6.38 -182.60 -1.16 2.80 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 36 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -32.31 326.95 -9.37 -41.68 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.56 Total: -1.62 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -3.41 Total: -15.67 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 1.20 Total: -43.91 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.31 -9.37 -41.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841634692.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.575 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds