Wall clock time and date at job start Fri Apr 10 2020 14:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50700 * 120.00077 * 2 1 4 4 C 1.53003 * 109.46801 * 294.99633 * 3 2 1 5 5 C 1.53006 * 109.47017 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.46978 * 180.02562 * 5 4 3 7 7 H 1.07992 * 120.00235 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99520 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00202 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99563 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47143 * 60.00536 * 10 8 6 12 12 H 1.48506 * 109.47049 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47379 * 299.99844 * 10 8 6 14 14 N 1.28018 * 120.00068 * 179.97438 * 2 1 3 15 15 N 1.40097 * 119.99748 * 0.02562 * 14 2 1 16 16 C 1.39019 * 119.99905 * 180.02562 * 15 14 2 17 17 C 1.39105 * 119.70224 * 179.97438 * 16 15 14 18 18 C 1.38451 * 119.07628 * 179.71995 * 17 16 15 19 19 Cl 1.73609 * 120.75814 * 180.22848 * 18 17 16 20 20 C 1.39023 * 118.48228 * 0.25433 * 18 17 16 21 21 C 1.38000 * 119.31926 * 0.02562 * 20 18 17 22 22 N 1.31965 * 120.87169 * 359.97438 * 21 20 18 23 23 H 1.08993 * 109.46992 * 270.00380 * 1 2 3 24 24 H 1.08998 * 109.47006 * 30.00443 * 1 2 3 25 25 H 1.09001 * 109.46839 * 149.99797 * 1 2 3 26 26 H 1.09001 * 109.47417 * 54.99578 * 3 2 1 27 27 H 1.08997 * 109.47410 * 174.99727 * 3 2 1 28 28 H 1.08996 * 109.47465 * 299.99906 * 4 3 2 29 29 H 1.08999 * 109.47303 * 60.00367 * 4 3 2 30 30 H 1.08996 * 109.46897 * 300.00218 * 5 4 3 31 31 H 1.08999 * 109.46814 * 60.00031 * 5 4 3 32 32 H 0.97002 * 119.99846 * 180.02562 * 9 8 6 33 33 H 0.96997 * 120.00616 * 359.97438 * 15 14 2 34 34 H 1.08002 * 120.46262 * 0.02562 * 17 16 15 35 35 H 1.08004 * 120.34508 * 179.97438 * 20 18 17 36 36 H 1.08000 * 119.56532 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0515 -1.3074 5 6 2.7531 3.3763 -1.3078 6 6 2.4838 4.1117 -2.5952 7 1 1.8323 3.6775 -3.3390 8 6 3.0702 5.3385 -2.8239 9 7 3.8649 5.8665 -1.9188 10 14 2.7369 6.2498 -4.4202 11 1 1.2817 6.5196 -4.5416 12 1 3.4798 7.5357 -4.4205 13 1 3.1839 5.4191 -5.5671 14 7 2.1471 -1.1087 0.0005 15 7 1.4466 -2.3219 0.0005 16 6 2.1417 -3.5259 0.0016 17 6 1.4399 -4.7269 0.0021 18 6 2.1452 -5.9183 -0.0027 19 17 1.3136 -7.4423 -0.0082 20 6 3.5344 -5.8663 -0.0025 21 6 4.1647 -4.6387 0.0030 22 7 3.4664 -3.5190 0.0075 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.9317 1.9146 0.8418 27 1 3.3288 1.1079 0.0896 28 1 2.3164 1.4421 -2.1492 29 1 0.9194 2.2488 -1.3970 30 1 2.4247 3.9858 -0.4660 31 1 3.8213 3.1786 -1.2184 32 1 4.2771 6.7297 -2.0796 33 1 0.4766 -2.3220 0.0005 34 1 0.3599 -4.7300 0.0013 35 1 4.1145 -6.7773 -0.0058 36 1 5.2438 -4.5937 0.0036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841634692.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:57 Heat of formation + Delta-G solvation = 37.631686 kcal Electronic energy + Delta-G solvation = -18173.128273 eV Core-core repulsion = 15103.854533 eV Total energy + Delta-G solvation = -3069.273740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28082 -39.19860 -37.76287 -36.48261 -34.98175 -33.38079 -33.11331 -30.88424 -29.09369 -28.75257 -25.58407 -24.72195 -23.69283 -22.10909 -20.40443 -19.19368 -18.41178 -17.61145 -17.23903 -16.77615 -16.50941 -15.92947 -15.80384 -15.50428 -14.98621 -14.79013 -14.69358 -14.15518 -13.70860 -13.54449 -13.31244 -13.21666 -12.88801 -12.81245 -12.58359 -12.42160 -12.40647 -12.09465 -11.48031 -11.37075 -11.21222 -10.95157 -10.69797 -10.52439 -10.50796 -10.46339 -8.79271 -8.16378 -6.26979 0.05015 0.09515 0.82018 1.26722 1.41907 1.44722 1.52466 1.62615 2.43641 2.78938 3.16723 3.29305 3.69000 3.83440 3.90126 3.98419 4.16730 4.28129 4.41729 4.52372 4.59039 4.63883 4.68104 4.81897 4.98040 4.98629 5.11107 5.24557 5.30473 5.33777 5.52043 5.57352 5.81918 5.90910 6.01502 6.29224 6.86438 6.90295 7.41701 7.42344 8.95072 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.033944 B = 0.002438 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.688700 B =11481.154652 C =11645.133642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.102 3.898 3 C -0.055 4.055 4 C -0.086 4.086 5 C 0.023 3.977 6 C -0.543 4.543 7 H 0.060 0.940 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.264 1.264 12 H -0.284 1.284 13 H -0.270 1.270 14 N -0.269 5.269 15 N -0.571 5.571 16 C 0.410 3.590 17 C -0.225 4.225 18 C 0.041 3.959 19 Cl -0.043 7.043 20 C -0.214 4.214 21 C 0.150 3.850 22 N -0.545 5.545 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.001 0.999 31 H -0.012 1.012 32 H 0.263 0.737 33 H 0.406 0.594 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 -25.543 5.838 27.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.091 4.091 3 C -0.094 4.094 4 C -0.125 4.125 5 C -0.014 4.014 6 C -0.581 4.581 7 H 0.078 0.922 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.195 1.195 14 N -0.074 5.074 15 N -0.297 5.297 16 C 0.176 3.824 17 C -0.252 4.252 18 C 0.006 3.994 19 Cl -0.014 7.014 20 C -0.236 4.236 21 C -0.008 4.008 22 N -0.262 5.262 23 H 0.119 0.881 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.020 0.980 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.250 0.750 34 H 0.179 0.821 35 H 0.187 0.813 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.124 -25.156 5.888 26.551 hybrid contribution -1.469 0.144 -0.710 1.637 sum -7.593 -25.011 5.178 26.646 Atomic orbital electron populations 1.21391 0.90608 1.04682 1.04756 1.25210 0.95989 0.92984 0.94951 1.20412 0.99357 0.90064 0.99588 1.21354 1.00536 0.95526 0.95041 1.19021 0.94301 0.92504 0.95615 1.21686 1.28414 1.03936 1.04019 0.92213 1.25967 0.94901 0.98658 1.00386 1.70088 1.32233 1.18524 1.36481 0.85544 0.78740 0.77557 0.79467 1.18911 1.20943 1.19529 1.74467 1.25874 0.91793 1.15218 1.45325 1.06898 0.99932 1.77580 1.18087 0.88597 0.84198 0.91532 1.21228 1.02264 0.89281 1.12394 1.21002 0.93084 0.87216 0.98085 1.98398 1.78247 1.28305 1.96417 1.22143 0.92679 1.01111 1.07712 1.23067 1.01356 0.85599 0.90778 1.67342 1.06823 1.33254 1.18752 0.88094 0.88885 0.90693 0.88554 0.92010 0.94212 0.91333 0.98039 0.99368 0.92826 0.74991 0.82147 0.81286 0.79436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.46 71.24 0.67 -2.36 16 2 C 0.10 2.89 6.55 46.53 0.30 3.20 16 3 C -0.05 -1.81 5.60 29.85 0.17 -1.64 16 4 C -0.09 -3.40 5.03 30.60 0.15 -3.25 16 5 C 0.02 1.19 4.97 29.85 0.15 1.34 16 6 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 7 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 8 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 9 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 10 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 14 N -0.27 -8.46 10.96 -41.20 -0.45 -8.91 16 15 N -0.57 -14.50 6.25 -55.40 -0.35 -14.85 16 16 C 0.41 10.43 7.59 133.03 1.01 11.44 16 17 C -0.23 -4.29 9.76 22.53 0.22 -4.07 16 18 C 0.04 0.71 6.37 22.51 0.14 0.86 16 19 Cl -0.04 -0.61 29.02 -2.72 -0.08 -0.69 16 20 C -0.21 -3.41 9.93 22.40 0.22 -3.19 16 21 C 0.15 2.99 11.17 84.62 0.95 3.94 16 22 N -0.55 -15.32 9.91 -193.25 -1.92 -17.24 16 23 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.09 1.84 6.91 -2.39 -0.02 1.82 16 25 H 0.07 1.22 6.31 -2.39 -0.02 1.20 16 26 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 27 H 0.06 2.26 8.11 -2.39 -0.02 2.24 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 2.47 7.01 -2.39 -0.02 2.45 16 30 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 31 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 32 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.41 7.59 6.38 -213.33 -1.36 6.23 16 34 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -70.85 326.95 3.94 -66.91 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -0.27 Total: 9.08 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 4.68 Total: -23.93 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -2.43 Total: -97.69 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -70.85 3.94 -66.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841634692.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.542 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds