Wall clock time and date at job start Fri Apr 10 2020 14:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.46870 * 2 1 4 4 C 1.35725 * 116.99679 * 180.02562 * 3 2 1 5 5 C 1.41855 * 126.78262 * 180.30032 * 4 3 2 6 6 C 1.36729 * 103.80548 * 180.15324 * 5 4 3 7 7 C 1.47404 * 126.88560 * 179.87909 * 6 5 4 8 8 O 1.21504 * 120.00107 * 5.42305 * 7 6 5 9 9 O 1.34781 * 120.00026 * 185.42788 * 7 6 5 10 10 C 1.45200 * 117.00021 * 184.67663 * 9 7 6 11 11 C 1.52994 * 109.46928 * 183.15454 * 10 9 7 12 12 C 1.50700 * 115.54977 * 294.98668 * 11 10 9 13 13 H 1.08005 * 119.99695 * 114.83388 * 12 11 10 14 14 C 1.37876 * 120.00315 * 294.56232 * 12 11 10 15 15 N 1.31520 * 119.99975 * 174.20883 * 14 12 11 16 16 Si 1.86796 * 119.99895 * 354.20641 * 14 12 11 17 17 H 1.48504 * 109.47192 * 92.52431 * 16 14 12 18 18 H 1.48498 * 109.47137 * 212.52593 * 16 14 12 19 19 H 1.48502 * 109.47136 * 332.52448 * 16 14 12 20 20 C 1.53000 * 117.50028 * 80.66047 * 11 10 9 21 21 C 1.53000 * 117.50103 * 149.32256 * 11 10 9 22 22 O 1.34680 * 106.22583 * 359.62230 * 6 5 4 23 23 N 1.20871 * 111.63063 * 0.25389 * 22 6 5 24 24 H 1.08999 * 109.47542 * 60.00041 * 1 2 3 25 25 H 1.09002 * 109.47373 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47218 * 300.00174 * 1 2 3 27 27 H 1.09002 * 109.47218 * 239.99825 * 2 1 3 28 28 H 1.08995 * 109.46973 * 119.99509 * 2 1 3 29 29 H 1.08004 * 128.09783 * 0.07565 * 5 4 3 30 30 H 1.08999 * 109.47097 * 63.15358 * 10 9 7 31 31 H 1.09004 * 109.46859 * 303.15188 * 10 9 7 32 32 H 0.96991 * 119.99541 * 179.97438 * 15 14 12 33 33 H 1.09003 * 117.50069 * 214.99821 * 20 11 10 34 34 H 1.09000 * 117.49784 * 0.02562 * 20 11 10 35 35 H 1.09010 * 117.49632 * 359.97324 * 21 11 10 36 36 H 1.08995 * 117.50284 * 144.97079 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3518 1.5252 -0.0005 5 6 4.0451 2.7628 0.0053 6 6 5.3629 2.3986 -0.0017 7 6 6.5298 3.2993 -0.0022 8 8 6.3710 4.4993 0.1035 9 8 7.7728 2.7918 -0.1199 10 6 8.8793 3.7253 -0.0080 11 6 10.1971 2.9850 -0.2449 12 6 10.5489 1.9396 0.7820 13 1 10.5949 0.8984 0.4987 14 6 10.8176 2.3129 2.0818 15 7 11.0125 1.3945 3.0028 16 14 10.9049 4.1231 2.5345 17 1 9.5708 4.5824 2.9976 18 1 11.8989 4.3142 3.6211 19 1 11.3145 4.9117 1.3448 20 6 10.6062 2.7170 -1.6946 21 6 11.3479 3.7741 -0.8725 22 8 5.3812 1.0519 -0.0021 23 7 4.2638 0.5911 -0.0015 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.6292 3.7595 0.0122 30 1 8.8839 4.1655 0.9891 31 1 8.7664 4.5134 -0.7526 32 1 11.2019 1.6572 3.9171 33 1 11.1299 1.7847 -1.9057 34 1 9.9367 3.0686 -2.4796 35 1 11.1659 4.8207 -1.1171 36 1 12.3593 3.5374 -0.5424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849791305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:46 Heat of formation + Delta-G solvation = -21.982451 kcal Electronic energy + Delta-G solvation = -21557.149041 eV Core-core repulsion = 18012.288323 eV Total energy + Delta-G solvation = -3544.860718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.06197 -40.05520 -39.19980 -37.25049 -35.68474 -33.65998 -32.18401 -32.15722 -31.37992 -27.69913 -25.60578 -24.62198 -23.55209 -23.21353 -21.66270 -20.93492 -19.31051 -18.87921 -18.05861 -17.13787 -17.01869 -16.31702 -16.22986 -15.91507 -15.62018 -14.77522 -14.72557 -14.00889 -13.70096 -13.38651 -13.22000 -13.03285 -12.71498 -12.58785 -12.35539 -12.15697 -11.47687 -11.43555 -11.11640 -11.01050 -10.78361 -10.62533 -10.30403 -10.15262 -10.00064 -9.59364 -9.47701 -9.12111 -8.72973 -8.53421 -6.14231 -4.15331 0.57414 1.94038 2.27224 2.40286 2.78239 3.21942 3.29683 3.34935 3.37723 3.94491 4.36119 4.50602 4.58399 4.65325 4.72283 4.89586 5.00130 5.03166 5.19854 5.29516 5.41432 5.48284 5.51752 5.65183 5.77966 5.85661 6.05225 6.20419 6.42598 6.55440 6.65879 6.73910 6.92323 7.05531 7.64854 7.74060 8.00799 8.46469 8.90622 9.47293 10.97599 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.025778 B = 0.003930 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.917835 B = 7123.569755 C = 7331.751244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.281 6.281 4 C 0.203 3.797 5 C -0.154 4.154 6 C -0.025 4.025 7 C 0.547 3.453 8 O -0.488 6.488 9 O -0.307 6.307 10 C 0.105 3.895 11 C -0.010 4.010 12 C -0.480 4.480 13 H 0.082 0.918 14 C 0.079 3.921 15 N -0.891 5.891 16 Si 0.858 3.142 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.248 1.248 20 C -0.174 4.174 21 C -0.179 4.179 22 O 0.145 5.855 23 N -0.385 5.385 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.192 0.808 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.266 0.734 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.152 1.369 -6.898 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.188 6.188 4 C 0.006 3.994 5 C -0.176 4.176 6 C -0.090 4.090 7 C 0.388 3.612 8 O -0.377 6.377 9 O -0.221 6.221 10 C 0.032 3.968 11 C -0.011 4.011 12 C -0.517 4.517 13 H 0.100 0.900 14 C -0.124 4.124 15 N -0.528 5.528 16 Si 0.684 3.316 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.172 1.172 20 C -0.211 4.211 21 C -0.217 4.217 22 O 0.075 5.925 23 N -0.106 5.106 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.210 0.790 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.407 0.560 -6.676 17.722 hybrid contribution -0.146 1.621 0.520 1.709 sum -16.552 2.181 -6.156 17.794 Atomic orbital electron populations 1.21794 0.92136 1.03233 1.03640 1.22863 0.95872 0.80480 1.02705 1.86201 1.12823 1.30374 1.89442 1.21726 0.85944 0.90271 1.01463 1.22109 0.89535 0.99478 1.06452 1.22800 0.94079 0.84472 1.07613 1.19170 0.82995 0.85003 0.74056 1.90899 1.86491 1.14302 1.45980 1.86742 1.13068 1.42180 1.80076 1.23205 0.83270 0.89467 1.00894 1.19320 0.88774 0.98843 0.94193 1.20241 1.46694 0.93169 0.91567 0.90023 1.24936 0.94250 0.97082 0.96114 1.69889 1.47694 1.33061 1.02165 0.87171 0.78177 0.86855 0.79348 1.20422 1.21331 1.17159 1.22809 1.03829 1.00213 0.94275 1.23099 0.98199 0.94950 1.05438 1.85139 1.22119 1.18080 1.67115 1.74065 0.90512 1.22257 1.23758 0.91370 0.89914 0.91329 0.91400 0.91350 0.79032 0.91530 0.92390 0.92453 0.89177 0.90696 0.90969 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.52 6.38 37.16 0.24 0.76 16 3 O -0.28 -3.41 10.21 -18.88 -0.19 -3.60 16 4 C 0.20 2.81 8.00 -16.72 -0.13 2.68 16 5 C -0.15 -2.07 10.97 -38.75 -0.43 -2.50 16 6 C -0.02 -0.40 7.36 -36.40 -0.27 -0.66 16 7 C 0.55 10.05 7.95 34.46 0.27 10.33 16 8 O -0.49 -9.35 16.65 -19.27 -0.32 -9.67 16 9 O -0.31 -6.43 10.17 -41.42 -0.42 -6.85 16 10 C 0.10 2.23 4.99 37.15 0.19 2.42 16 11 C -0.01 -0.23 1.06 -155.66 -0.17 -0.40 16 12 C -0.48 -13.08 9.33 -34.44 -0.32 -13.40 16 13 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 14 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 15 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 16 Si 0.86 20.66 25.00 -169.99 -4.25 16.41 16 17 H -0.28 -6.70 6.99 56.52 0.40 -6.30 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.25 -5.49 5.73 56.52 0.32 -5.17 16 20 C -0.17 -3.38 9.96 -26.69 -0.27 -3.65 16 21 C -0.18 -3.56 8.02 -26.69 -0.21 -3.78 16 22 O 0.14 2.43 11.22 15.45 0.17 2.60 16 23 N -0.38 -5.96 11.50 30.48 0.35 -5.61 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.19 2.08 8.06 -52.48 -0.42 1.66 16 30 H 0.07 1.50 5.05 -51.93 -0.26 1.24 16 31 H 0.06 1.09 7.98 -51.93 -0.41 0.67 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 36 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -30.42 319.04 -4.44 -34.86 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.55 Total: -0.37 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.81 Total: -6.68 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 1.12 Total: -31.50 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.76 Total: -17.52 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.25 Total: 16.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.42 -4.44 -34.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849791305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.877 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds