Wall clock time and date at job start Fri Apr 10 2020 14:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50690 * 119.99831 * 2 1 4 4 C 1.52998 * 109.47709 * 295.00569 * 3 2 1 5 5 C 1.52996 * 109.47354 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47495 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99351 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00261 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00057 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00057 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46924 * 89.99940 * 10 8 6 12 12 H 1.48495 * 109.47386 * 210.00231 * 10 8 6 13 13 H 1.48504 * 109.47193 * 330.00187 * 10 8 6 14 14 N 1.28016 * 119.99606 * 180.02562 * 2 1 3 15 15 N 1.40100 * 120.00557 * 359.97438 * 14 2 1 16 16 C 1.39155 * 120.00035 * 179.97438 * 15 14 2 17 17 C 1.39571 * 120.86476 * 359.97438 * 16 15 14 18 18 C 1.37839 * 119.09453 * 180.02562 * 17 16 15 19 19 N 1.32024 * 120.86782 * 0.02562 * 18 17 16 20 20 C 1.32082 * 121.89730 * 359.66038 * 19 18 17 21 21 Cl 1.73606 * 119.59265 * 180.31539 * 20 19 18 22 22 C 1.38081 * 120.81608 * 0.63273 * 20 19 18 23 23 H 1.09004 * 109.47006 * 269.99579 * 1 2 3 24 24 H 1.08992 * 109.47323 * 29.99198 * 1 2 3 25 25 H 1.09000 * 109.47442 * 149.99476 * 1 2 3 26 26 H 1.09004 * 109.47241 * 55.01120 * 3 2 1 27 27 H 1.09001 * 109.47073 * 175.00170 * 3 2 1 28 28 H 1.08998 * 109.46747 * 300.00023 * 4 3 2 29 29 H 1.09001 * 109.47178 * 59.99665 * 4 3 2 30 30 H 1.09006 * 109.47034 * 300.00031 * 5 4 3 31 31 H 1.09001 * 109.47288 * 59.99687 * 5 4 3 32 32 H 0.97003 * 120.00029 * 180.02562 * 9 8 6 33 33 H 0.96998 * 119.99753 * 0.02562 * 15 14 2 34 34 H 1.08005 * 120.45511 * 359.97438 * 17 16 15 35 35 H 1.08007 * 119.56192 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.48016 * 179.68545 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 1.9875 2.0517 -1.3072 5 6 2.7530 3.3764 -1.3074 6 6 2.4836 4.1121 -2.5947 7 1 1.8319 3.6780 -3.3385 8 6 3.0690 5.3394 -2.8229 9 7 3.8630 5.8677 -1.9174 10 14 2.7357 6.2510 -4.4189 11 1 1.5484 7.1268 -4.2500 12 1 3.9162 7.0799 -4.7714 13 1 2.4773 5.2708 -5.5042 14 7 2.1471 -1.1087 -0.0005 15 7 1.4466 -2.3220 -0.0005 16 6 2.1424 -3.5271 -0.0016 17 6 3.5379 -3.5482 -0.0032 18 6 4.1900 -4.7626 -0.0048 19 7 3.5119 -5.8954 -0.0053 20 6 2.1913 -5.9184 0.0024 21 17 1.3604 -7.4427 0.0096 22 6 1.4634 -4.7451 -0.0019 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 1.9318 1.9144 0.8419 27 1 3.3287 1.1078 0.0895 28 1 2.3162 1.4424 -2.1491 29 1 0.9192 2.2489 -1.3968 30 1 2.4246 3.9859 -0.4654 31 1 3.8212 3.1788 -1.2181 32 1 4.2746 6.7313 -2.0777 33 1 0.4766 -2.3220 -0.0005 34 1 4.0993 -2.6255 -0.0041 35 1 5.2697 -4.7877 -0.0065 36 1 0.3837 -4.7702 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853396447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:10 Heat of formation + Delta-G solvation = 49.373185 kcal Electronic energy + Delta-G solvation = -18174.934769 eV Core-core repulsion = 15106.170179 eV Total energy + Delta-G solvation = -3068.764590 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41593 -38.37233 -36.85176 -35.43365 -33.70898 -32.04688 -31.19181 -30.06096 -28.37282 -27.24721 -24.00530 -23.80290 -22.67245 -20.50362 -19.45571 -18.32841 -16.90455 -16.25532 -15.96955 -15.89684 -15.22777 -14.95233 -14.57243 -14.31130 -14.10900 -13.98275 -13.61317 -12.84906 -12.50018 -12.14357 -12.09236 -11.86768 -11.76880 -11.53382 -11.47610 -10.92563 -10.86229 -10.60467 -10.28700 -10.16168 -9.81238 -9.76552 -9.42689 -9.22808 -9.13887 -8.39411 -8.00107 -6.04555 -4.07141 0.79125 1.02608 1.55437 2.17119 2.44929 3.28634 3.35509 3.38498 3.55771 4.29999 4.41560 4.54664 4.57355 4.70286 4.85014 4.94793 5.20573 5.26264 5.28428 5.31698 5.52312 5.71580 5.75237 5.79551 5.88831 6.11768 6.25144 6.38484 6.61461 6.72488 6.85019 7.01058 7.61402 7.63612 7.74536 7.94782 8.05477 8.36671 8.99742 9.57303 11.06658 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.033907 B = 0.002430 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.601969 B =11519.754621 C =11693.605318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 C -0.065 4.065 4 C -0.103 4.103 5 C 0.021 3.979 6 C -0.522 4.522 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.264 5.264 15 N -0.582 5.582 16 C 0.280 3.720 17 C -0.213 4.213 18 C 0.148 3.852 19 N -0.519 5.519 20 C 0.213 3.787 21 Cl -0.038 7.038 22 C -0.233 4.233 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.389 0.611 34 H 0.152 0.848 35 H 0.166 0.834 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 -20.030 6.395 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.072 4.072 3 C -0.105 4.105 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.560 4.560 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.069 5.069 15 N -0.301 5.301 16 C 0.168 3.832 17 C -0.237 4.237 18 C -0.007 4.007 19 N -0.234 5.234 20 C 0.048 3.952 21 Cl -0.010 7.010 22 C -0.260 4.260 23 H 0.101 0.899 24 H 0.113 0.887 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.230 0.770 34 H 0.170 0.830 35 H 0.183 0.817 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.780 -21.197 6.430 22.661 hybrid contribution -2.001 1.432 -0.903 2.621 sum -6.782 -19.766 5.527 21.615 Atomic orbital electron populations 1.21391 0.93161 1.04169 1.03435 1.25383 0.94583 0.94024 0.93181 1.20712 0.99895 0.88601 1.01256 1.21642 1.00763 0.98410 0.93367 1.19105 0.95371 0.89914 0.97189 1.21226 1.28477 1.03371 1.02944 0.92739 1.25015 0.95141 0.97572 0.96700 1.69954 1.31180 1.17940 1.34304 0.86610 0.77768 0.79825 0.83897 1.20668 1.21193 1.19910 1.74272 1.24771 0.90972 1.16855 1.45447 1.06706 1.00816 1.77132 1.17553 0.91769 0.83685 0.90230 1.21884 0.92879 1.00937 1.07998 1.22465 1.00102 0.85795 0.92315 1.67043 1.06993 1.31494 1.17825 1.21092 0.89843 0.86531 0.97707 1.98396 1.75596 1.30498 1.96477 1.21072 1.01191 0.89782 1.13959 0.89908 0.88702 0.92103 0.89586 0.90053 0.93096 0.92945 0.96377 0.96342 0.92953 0.76963 0.83035 0.81672 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.46 36.01 0.34 -1.23 16 2 C 0.12 1.54 6.55 -78.91 -0.52 1.02 16 3 C -0.06 -0.95 5.60 -27.89 -0.16 -1.11 16 4 C -0.10 -1.89 5.03 -26.73 -0.13 -2.02 16 5 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 6 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 7 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 10 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 N -0.26 -3.53 10.31 35.60 0.37 -3.17 16 15 N -0.58 -6.65 6.27 32.54 0.20 -6.45 16 16 C 0.28 3.25 6.77 -83.59 -0.57 2.68 16 17 C -0.21 -2.46 9.58 -39.23 -0.38 -2.83 16 18 C 0.15 1.59 11.17 -17.61 -0.20 1.39 16 19 N -0.52 -6.42 10.34 -10.46 -0.11 -6.53 16 20 C 0.21 2.46 7.27 -17.50 -0.13 2.33 16 21 Cl -0.04 -0.39 29.10 -51.86 -1.51 -1.90 16 22 C -0.23 -2.44 9.76 -39.19 -0.38 -2.82 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.09 0.94 6.91 -51.93 -0.36 0.58 16 25 H 0.06 0.51 6.31 -51.93 -0.33 0.19 16 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.91 7.01 -51.93 -0.36 0.54 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.39 3.58 6.42 -182.60 -1.17 2.41 16 34 H 0.15 1.78 7.46 -52.48 -0.39 1.39 16 35 H 0.17 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -30.51 326.00 -8.62 -39.13 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.54 Total: -1.44 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.66 Total: -15.24 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 1.20 Total: -41.59 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.90 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.51 -8.62 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853396447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.502 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds