Wall clock time and date at job start Fri Apr 10 2020 14:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50690 * 119.99831 * 2 1 4 4 C 1.52998 * 109.47709 * 295.00569 * 3 2 1 5 5 C 1.52996 * 109.47354 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47495 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99351 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00261 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00057 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00057 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46924 * 89.99940 * 10 8 6 12 12 H 1.48495 * 109.47386 * 210.00231 * 10 8 6 13 13 H 1.48504 * 109.47193 * 330.00187 * 10 8 6 14 14 N 1.28016 * 119.99606 * 180.02562 * 2 1 3 15 15 N 1.40100 * 120.00557 * 359.97438 * 14 2 1 16 16 C 1.39155 * 120.00035 * 179.97438 * 15 14 2 17 17 C 1.39571 * 120.86476 * 359.97438 * 16 15 14 18 18 C 1.37839 * 119.09453 * 180.02562 * 17 16 15 19 19 N 1.32024 * 120.86782 * 0.02562 * 18 17 16 20 20 C 1.32082 * 121.89730 * 359.66038 * 19 18 17 21 21 Cl 1.73606 * 119.59265 * 180.31539 * 20 19 18 22 22 C 1.38081 * 120.81608 * 0.63273 * 20 19 18 23 23 H 1.09004 * 109.47006 * 269.99579 * 1 2 3 24 24 H 1.08992 * 109.47323 * 29.99198 * 1 2 3 25 25 H 1.09000 * 109.47442 * 149.99476 * 1 2 3 26 26 H 1.09004 * 109.47241 * 55.01120 * 3 2 1 27 27 H 1.09001 * 109.47073 * 175.00170 * 3 2 1 28 28 H 1.08998 * 109.46747 * 300.00023 * 4 3 2 29 29 H 1.09001 * 109.47178 * 59.99665 * 4 3 2 30 30 H 1.09006 * 109.47034 * 300.00031 * 5 4 3 31 31 H 1.09001 * 109.47288 * 59.99687 * 5 4 3 32 32 H 0.97003 * 120.00029 * 180.02562 * 9 8 6 33 33 H 0.96998 * 119.99753 * 0.02562 * 15 14 2 34 34 H 1.08005 * 120.45511 * 359.97438 * 17 16 15 35 35 H 1.08007 * 119.56192 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.48016 * 179.68545 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 1.9875 2.0517 -1.3072 5 6 2.7530 3.3764 -1.3074 6 6 2.4836 4.1121 -2.5947 7 1 1.8319 3.6780 -3.3385 8 6 3.0690 5.3394 -2.8229 9 7 3.8630 5.8677 -1.9174 10 14 2.7357 6.2510 -4.4189 11 1 1.5484 7.1268 -4.2500 12 1 3.9162 7.0799 -4.7714 13 1 2.4773 5.2708 -5.5042 14 7 2.1471 -1.1087 -0.0005 15 7 1.4466 -2.3220 -0.0005 16 6 2.1424 -3.5271 -0.0016 17 6 3.5379 -3.5482 -0.0032 18 6 4.1900 -4.7626 -0.0048 19 7 3.5119 -5.8954 -0.0053 20 6 2.1913 -5.9184 0.0024 21 17 1.3604 -7.4427 0.0096 22 6 1.4634 -4.7451 -0.0019 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 1.9318 1.9144 0.8419 27 1 3.3287 1.1078 0.0895 28 1 2.3162 1.4424 -2.1491 29 1 0.9192 2.2489 -1.3968 30 1 2.4246 3.9859 -0.4654 31 1 3.8212 3.1788 -1.2181 32 1 4.2746 6.7313 -2.0777 33 1 0.4766 -2.3220 -0.0005 34 1 4.0993 -2.6255 -0.0041 35 1 5.2697 -4.7877 -0.0065 36 1 0.3837 -4.7702 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853396447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:09 Heat of formation + Delta-G solvation = 32.145351 kcal Electronic energy + Delta-G solvation = -18175.681824 eV Core-core repulsion = 15106.170179 eV Total energy + Delta-G solvation = -3069.511645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26895 -39.34309 -37.67902 -36.67618 -35.26617 -33.65364 -32.04593 -31.20557 -29.20935 -28.82063 -25.60225 -24.69094 -23.73205 -22.12005 -20.48516 -19.22548 -18.42681 -17.69159 -16.90621 -16.73224 -16.51635 -16.11536 -15.83844 -15.55430 -15.13622 -14.92473 -14.74315 -14.17822 -13.77014 -13.56965 -13.26076 -12.96286 -12.85185 -12.69098 -12.58908 -12.45646 -12.40108 -12.33227 -11.52126 -11.39266 -11.30853 -11.06794 -10.96993 -10.66554 -10.51289 -10.05531 -8.90852 -8.17078 -6.27147 -0.04879 0.14366 0.72049 1.21124 1.42039 1.42911 1.53455 1.56709 2.43185 2.70388 3.16617 3.51803 3.60631 3.70474 3.89367 4.00633 4.15750 4.26171 4.39028 4.49440 4.58655 4.63457 4.66448 4.78395 4.96828 5.01817 5.10047 5.24282 5.31876 5.38040 5.51434 5.57579 5.81993 5.91250 6.00728 6.29046 6.79095 6.90713 7.15799 7.41930 8.94380 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.033907 B = 0.002430 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.601969 B =11519.754621 C =11693.605318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 C -0.057 4.057 4 C -0.087 4.087 5 C 0.022 3.978 6 C -0.541 4.541 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.266 1.266 14 N -0.284 5.284 15 N -0.576 5.576 16 C 0.267 3.733 17 C -0.224 4.224 18 C 0.149 3.851 19 N -0.539 5.539 20 C 0.199 3.801 21 Cl -0.029 7.029 22 C -0.224 4.224 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.001 0.999 31 H -0.009 1.009 32 H 0.263 0.737 33 H 0.402 0.598 34 H 0.146 0.854 35 H 0.190 0.810 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 -20.874 5.943 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.074 4.074 3 C -0.097 4.097 4 C -0.126 4.126 5 C -0.015 4.015 6 C -0.579 4.579 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.190 1.190 14 N -0.089 5.089 15 N -0.297 5.297 16 C 0.155 3.845 17 C -0.248 4.248 18 C -0.006 4.006 19 N -0.254 5.254 20 C 0.035 3.965 21 Cl -0.001 7.001 22 C -0.251 4.251 23 H 0.120 0.880 24 H 0.112 0.888 25 H 0.094 0.906 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.019 0.981 31 H 0.009 0.991 32 H 0.071 0.929 33 H 0.244 0.756 34 H 0.164 0.836 35 H 0.207 0.793 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.325 -22.060 5.977 23.714 hybrid contribution -1.494 1.633 -0.730 2.331 sum -7.819 -20.427 5.246 22.493 Atomic orbital electron populations 1.21428 0.90679 1.04816 1.04897 1.25164 0.96005 0.92809 0.93395 1.20461 0.99697 0.89868 0.99625 1.21363 1.00525 0.95571 0.95151 1.19028 0.94450 0.92533 0.95491 1.21719 1.28251 1.03843 1.04087 0.92263 1.25929 0.94957 0.98702 1.00239 1.70083 1.32334 1.18456 1.36404 0.85525 0.77773 0.78550 0.79675 1.19658 1.21038 1.18986 1.74168 1.26070 0.91806 1.16887 1.45306 1.07221 1.00043 1.77139 1.17737 0.91996 0.84105 0.90642 1.21954 0.93218 1.01040 1.08612 1.22837 1.01239 0.85151 0.91382 1.67087 1.07635 1.32173 1.18530 1.21336 0.89927 0.87308 0.97908 1.98395 1.75313 1.29941 1.96431 1.21232 1.02300 0.88875 1.12709 0.87956 0.88833 0.90626 0.88417 0.91289 0.93923 0.91487 0.98082 0.99101 0.92857 0.75569 0.83631 0.79287 0.81862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.46 71.24 0.67 -1.98 16 2 C 0.12 2.84 6.55 46.53 0.30 3.15 16 3 C -0.06 -1.64 5.60 29.84 0.17 -1.48 16 4 C -0.09 -3.18 5.03 30.59 0.15 -3.02 16 5 C 0.02 1.10 4.97 29.85 0.15 1.24 16 6 C -0.54 -29.65 9.11 25.60 0.23 -29.42 16 7 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 8 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 9 N -0.93 -55.50 13.29 21.44 0.28 -55.22 16 10 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 14 N -0.28 -7.25 10.31 -41.20 -0.42 -7.68 16 15 N -0.58 -12.10 6.27 -50.96 -0.32 -12.42 16 16 C 0.27 5.81 6.77 38.59 0.26 6.07 16 17 C -0.22 -5.00 9.58 22.50 0.22 -4.79 16 18 C 0.15 3.05 11.17 84.57 0.94 4.00 16 19 N -0.54 -12.75 10.34 -186.99 -1.93 -14.69 16 20 C 0.20 4.33 7.27 84.62 0.61 4.94 16 21 Cl -0.03 -0.55 29.10 -2.72 -0.08 -0.63 16 22 C -0.22 -4.29 9.76 22.52 0.22 -4.07 16 23 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.09 1.62 6.91 -2.39 -0.02 1.60 16 25 H 0.08 1.04 6.31 -2.39 -0.02 1.03 16 26 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.07 2.15 8.11 -2.39 -0.02 2.13 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 29 H 0.07 2.24 7.01 -2.39 -0.02 2.22 16 30 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.40 6.33 6.42 -213.32 -1.37 4.96 16 34 H 0.15 3.40 7.46 -2.91 -0.02 3.38 16 35 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -65.53 326.00 3.68 -61.85 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -0.27 Total: 8.41 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 4.40 Total: -24.93 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -2.39 Total: -90.00 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -65.53 3.68 -61.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853396447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.992 kcal (2) G-P(sol) polarization free energy of solvation -65.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds