Wall clock time and date at job start Fri Apr 10 2020 14:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50698 * 120.00292 * 2 1 4 4 C 1.53002 * 109.47212 * 295.00141 * 3 2 1 5 5 C 1.52996 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47188 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00365 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99909 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00296 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46929 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47016 * 120.00049 * 10 8 6 13 13 H 1.48500 * 109.47213 * 240.00406 * 10 8 6 14 14 N 1.28022 * 119.99803 * 180.02562 * 2 1 3 15 15 N 1.40100 * 119.99907 * 359.97438 * 14 2 1 16 16 C 1.39073 * 120.00198 * 179.97438 * 15 14 2 17 17 C 1.39150 * 119.69656 * 180.02562 * 16 15 14 18 18 C 1.38305 * 119.10704 * 179.97438 * 17 16 15 19 19 C 1.38963 * 118.49809 * 0.02562 * 18 17 16 20 20 Cl 1.73605 * 120.34714 * 179.97438 * 19 18 17 21 21 C 1.38169 * 119.30900 * 0.02562 * 19 18 17 22 22 N 1.31944 * 120.83888 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.46839 * 269.99943 * 1 2 3 24 24 H 1.08999 * 109.46532 * 29.99799 * 1 2 3 25 25 H 1.08994 * 109.47425 * 149.99573 * 1 2 3 26 26 H 1.08998 * 109.46935 * 55.00391 * 3 2 1 27 27 H 1.09004 * 109.47017 * 174.99908 * 3 2 1 28 28 H 1.09004 * 109.46969 * 299.99933 * 4 3 2 29 29 H 1.08997 * 109.46690 * 59.99828 * 4 3 2 30 30 H 1.09004 * 109.47040 * 299.99691 * 5 4 3 31 31 H 1.08997 * 109.47681 * 59.99692 * 5 4 3 32 32 H 0.97001 * 120.00345 * 179.97438 * 9 8 6 33 33 H 0.97009 * 119.99932 * 0.02562 * 15 14 2 34 34 H 1.08002 * 120.44246 * 0.25331 * 17 16 15 35 35 H 1.08006 * 120.74801 * 180.02562 * 18 17 16 36 36 H 1.07995 * 119.57647 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 1.9876 2.0516 -1.3073 5 6 2.7532 3.3762 -1.3076 6 6 2.4839 4.1118 -2.5949 7 1 1.8323 3.6778 -3.3387 8 6 3.0695 5.3391 -2.8232 9 7 3.8634 5.8675 -1.9177 10 14 2.7362 6.2506 -4.4193 11 1 1.8166 5.4478 -5.2650 12 1 2.1116 7.5637 -4.1183 13 1 4.0150 6.4649 -5.1433 14 7 2.1471 -1.1087 -0.0005 15 7 1.4465 -2.3220 -0.0005 16 6 2.1418 -3.5265 -0.0016 17 6 1.4396 -4.7278 -0.0021 18 6 2.1433 -5.9184 -0.0037 19 6 3.5320 -5.8678 -0.0042 20 17 4.4631 -7.3331 -0.0055 21 6 4.1640 -4.6392 -0.0025 22 7 3.4660 -3.5195 0.0000 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 1.9318 1.9144 0.8418 27 1 3.3288 1.1077 0.0896 28 1 2.3164 1.4422 -2.1492 29 1 0.9194 2.2488 -1.3968 30 1 2.4248 3.9858 -0.4657 31 1 3.8214 3.1787 -1.2182 32 1 4.2757 6.7307 -2.0784 33 1 0.4764 -2.3219 -0.0005 34 1 0.3595 -4.7303 -0.0058 35 1 1.6251 -6.8661 -0.0046 36 1 5.2431 -4.5948 -0.0033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853434354.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:03 Heat of formation + Delta-G solvation = 55.108529 kcal Electronic energy + Delta-G solvation = -18149.672894 eV Core-core repulsion = 15081.157007 eV Total energy + Delta-G solvation = -3068.515887 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47100 -38.14890 -36.77762 -35.00612 -33.32936 -32.67715 -31.70527 -29.59502 -28.13857 -27.10986 -24.17195 -23.71402 -22.65052 -20.40952 -19.30820 -18.20733 -16.88921 -16.68059 -16.18866 -15.87635 -15.00703 -14.77292 -14.50028 -14.13552 -13.87201 -13.70304 -13.40511 -12.81082 -12.75812 -12.41142 -12.04156 -11.79003 -11.61377 -11.45328 -11.35205 -10.84228 -10.72702 -10.53075 -10.14372 -10.02894 -9.70495 -9.66993 -9.59072 -9.31077 -9.04380 -8.33951 -7.80414 -5.98981 -4.01144 0.79418 0.96665 1.87940 2.30229 2.48655 3.31651 3.39268 3.43061 3.58550 4.08734 4.46743 4.49453 4.60515 4.62598 4.72262 4.99357 5.16784 5.32273 5.35407 5.37095 5.57361 5.63721 5.84246 5.85499 6.00064 6.03701 6.22166 6.46788 6.71249 6.84013 6.88956 7.10661 7.68550 7.69030 7.83284 8.01319 8.33299 8.43471 9.06141 9.62876 11.12359 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.028469 B = 0.002478 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.285461 B =11295.451617 C =11796.592850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.107 3.893 3 C -0.063 4.063 4 C -0.102 4.102 5 C 0.021 3.979 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.238 5.238 15 N -0.574 5.574 16 C 0.426 3.574 17 C -0.226 4.226 18 C -0.024 4.024 19 C -0.151 4.151 20 Cl -0.068 7.068 21 C 0.165 3.835 22 N -0.492 5.492 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.393 0.607 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 -23.849 6.393 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.087 4.087 3 C -0.103 4.103 4 C -0.141 4.141 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.042 5.042 15 N -0.297 5.297 16 C 0.191 3.809 17 C -0.252 4.252 18 C -0.050 4.050 19 C -0.182 4.182 20 Cl -0.039 7.039 21 C 0.005 3.995 22 N -0.207 5.207 23 H 0.099 0.901 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.235 0.765 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.794 -23.414 6.435 24.751 hybrid contribution -1.801 -0.166 -0.907 2.023 sum -6.595 -23.580 5.528 25.101 Atomic orbital electron populations 1.21366 0.93473 1.03921 1.03203 1.25424 0.94320 0.94367 0.94616 1.20661 1.00005 0.88635 1.00961 1.21628 1.00584 0.98344 0.93557 1.19111 0.95446 0.89989 0.97113 1.21278 1.28291 1.03278 1.02933 0.92704 1.25023 0.95220 0.97591 0.96666 1.69970 1.31308 1.17943 1.34207 0.86561 0.78052 0.79708 0.83823 1.19799 1.21045 1.21011 1.74645 1.23898 0.90615 1.15061 1.45527 1.06369 1.00878 1.76876 1.18092 0.88705 0.84092 0.90019 1.21260 1.01131 0.90621 1.12155 1.21142 0.91799 0.98613 0.93494 1.21772 0.92922 0.88915 1.14635 1.98356 1.73103 1.35079 1.97383 1.22612 1.00487 0.84931 0.91479 1.67535 1.06065 1.29358 1.17733 0.90134 0.88863 0.92320 0.89846 0.90051 0.93148 0.93063 0.96396 0.96316 0.93058 0.76468 0.84285 0.83814 0.81745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.46 36.01 0.34 -1.35 16 2 C 0.11 1.52 6.55 -78.91 -0.52 1.01 16 3 C -0.06 -1.03 5.60 -27.88 -0.16 -1.18 16 4 C -0.10 -2.00 5.03 -26.73 -0.13 -2.14 16 5 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 6 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 7 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 10 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.24 -3.73 10.96 35.60 0.39 -3.34 16 15 N -0.57 -7.31 6.26 31.15 0.19 -7.11 16 16 C 0.43 5.41 7.60 -154.92 -1.18 4.23 16 17 C -0.23 -2.08 9.94 -39.22 -0.39 -2.47 16 18 C -0.02 -0.20 9.97 -39.29 -0.39 -0.60 16 19 C -0.15 -1.48 6.34 -39.34 -0.25 -1.73 16 20 Cl -0.07 -0.59 28.99 -51.86 -1.50 -2.09 16 21 C 0.17 1.89 10.97 -17.53 -0.19 1.69 16 22 N -0.49 -7.04 9.91 -12.38 -0.12 -7.16 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.09 1.01 6.91 -51.93 -0.36 0.65 16 25 H 0.06 0.53 6.31 -51.93 -0.33 0.20 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.94 7.01 -51.93 -0.36 0.57 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.39 3.78 6.38 -182.59 -1.16 2.61 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 326.92 15.07 4.93 4.93 Total: -1.00 -32.38 326.92 -9.38 -41.75 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.56 Total: -1.97 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -3.42 Total: -15.52 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 1.20 Total: -43.66 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.38 -9.38 -41.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853434354.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.863 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds