Wall clock time and date at job start Fri Apr 10 2020 14:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50698 * 120.00292 * 2 1 4 4 C 1.53002 * 109.47212 * 295.00141 * 3 2 1 5 5 C 1.52996 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47188 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00365 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99909 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00296 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46929 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47016 * 120.00049 * 10 8 6 13 13 H 1.48500 * 109.47213 * 240.00406 * 10 8 6 14 14 N 1.28022 * 119.99803 * 180.02562 * 2 1 3 15 15 N 1.40100 * 119.99907 * 359.97438 * 14 2 1 16 16 C 1.39073 * 120.00198 * 179.97438 * 15 14 2 17 17 C 1.39150 * 119.69656 * 180.02562 * 16 15 14 18 18 C 1.38305 * 119.10704 * 179.97438 * 17 16 15 19 19 C 1.38963 * 118.49809 * 0.02562 * 18 17 16 20 20 Cl 1.73605 * 120.34714 * 179.97438 * 19 18 17 21 21 C 1.38169 * 119.30900 * 0.02562 * 19 18 17 22 22 N 1.31944 * 120.83888 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.46839 * 269.99943 * 1 2 3 24 24 H 1.08999 * 109.46532 * 29.99799 * 1 2 3 25 25 H 1.08994 * 109.47425 * 149.99573 * 1 2 3 26 26 H 1.08998 * 109.46935 * 55.00391 * 3 2 1 27 27 H 1.09004 * 109.47017 * 174.99908 * 3 2 1 28 28 H 1.09004 * 109.46969 * 299.99933 * 4 3 2 29 29 H 1.08997 * 109.46690 * 59.99828 * 4 3 2 30 30 H 1.09004 * 109.47040 * 299.99691 * 5 4 3 31 31 H 1.08997 * 109.47681 * 59.99692 * 5 4 3 32 32 H 0.97001 * 120.00345 * 179.97438 * 9 8 6 33 33 H 0.97009 * 119.99932 * 0.02562 * 15 14 2 34 34 H 1.08002 * 120.44246 * 0.25331 * 17 16 15 35 35 H 1.08006 * 120.74801 * 180.02562 * 18 17 16 36 36 H 1.07995 * 119.57647 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 1.9876 2.0516 -1.3073 5 6 2.7532 3.3762 -1.3076 6 6 2.4839 4.1118 -2.5949 7 1 1.8323 3.6778 -3.3387 8 6 3.0695 5.3391 -2.8232 9 7 3.8634 5.8675 -1.9177 10 14 2.7362 6.2506 -4.4193 11 1 1.8166 5.4478 -5.2650 12 1 2.1116 7.5637 -4.1183 13 1 4.0150 6.4649 -5.1433 14 7 2.1471 -1.1087 -0.0005 15 7 1.4465 -2.3220 -0.0005 16 6 2.1418 -3.5265 -0.0016 17 6 1.4396 -4.7278 -0.0021 18 6 2.1433 -5.9184 -0.0037 19 6 3.5320 -5.8678 -0.0042 20 17 4.4631 -7.3331 -0.0055 21 6 4.1640 -4.6392 -0.0025 22 7 3.4660 -3.5195 0.0000 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 1.9318 1.9144 0.8418 27 1 3.3288 1.1077 0.0896 28 1 2.3164 1.4422 -2.1492 29 1 0.9194 2.2488 -1.3968 30 1 2.4248 3.9858 -0.4657 31 1 3.8214 3.1787 -1.2182 32 1 4.2757 6.7307 -2.0784 33 1 0.4764 -2.3219 -0.0005 34 1 0.3595 -4.7303 -0.0058 35 1 1.6251 -6.8661 -0.0046 36 1 5.2431 -4.5948 -0.0033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853434354.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:03 Heat of formation + Delta-G solvation = 36.617570 kcal Electronic energy + Delta-G solvation = -18150.474722 eV Core-core repulsion = 15081.157007 eV Total energy + Delta-G solvation = -3069.317715 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29536 -39.19816 -37.54554 -36.44226 -34.92965 -33.46225 -33.30845 -30.72041 -29.06427 -28.69565 -25.60482 -24.79001 -23.67073 -22.12170 -20.40915 -19.10342 -18.40861 -17.64391 -17.51128 -16.85991 -16.50689 -15.91509 -15.64103 -15.48125 -14.99041 -14.81523 -14.24058 -14.12697 -13.70919 -13.53441 -13.50477 -13.22592 -12.88645 -12.70378 -12.58496 -12.38409 -12.30549 -12.16852 -11.48628 -11.37820 -11.17191 -10.93315 -10.89566 -10.53053 -10.51406 -10.43765 -8.70162 -8.17206 -6.27702 -0.02578 0.22030 1.12025 1.25721 1.41212 1.41991 1.54716 1.60795 2.43080 2.75681 3.16109 3.25193 3.69238 3.81376 3.85015 3.92661 4.11876 4.25001 4.40776 4.55724 4.63552 4.66254 4.69842 4.88048 4.95567 4.99301 5.10374 5.24036 5.27599 5.34087 5.47766 5.57078 5.81211 5.90446 6.02944 6.28620 6.80891 6.90036 7.41199 7.42057 8.94707 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.028469 B = 0.002478 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.285461 B =11295.451617 C =11796.592850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.103 3.897 3 C -0.055 4.055 4 C -0.085 4.085 5 C 0.022 3.978 6 C -0.540 4.540 7 H 0.060 0.940 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.276 1.276 13 H -0.281 1.281 14 N -0.273 5.273 15 N -0.570 5.570 16 C 0.397 3.603 17 C -0.209 4.209 18 C -0.020 4.020 19 C -0.148 4.148 20 Cl -0.057 7.057 21 C 0.146 3.854 22 N -0.537 5.537 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.001 0.999 31 H -0.013 1.013 32 H 0.263 0.737 33 H 0.408 0.592 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 -25.603 5.833 27.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.091 4.091 3 C -0.095 4.095 4 C -0.124 4.124 5 C -0.015 4.015 6 C -0.578 4.578 7 H 0.078 0.922 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.207 1.207 14 N -0.078 5.078 15 N -0.296 5.296 16 C 0.163 3.837 17 C -0.235 4.235 18 C -0.046 4.046 19 C -0.179 4.179 20 Cl -0.029 7.029 21 C -0.013 4.013 22 N -0.253 5.253 23 H 0.119 0.881 24 H 0.110 0.890 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.020 0.980 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.253 0.747 34 H 0.192 0.808 35 H 0.195 0.805 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.042 -25.202 5.875 26.819 hybrid contribution -1.034 0.249 -0.694 1.270 sum -8.076 -24.954 5.182 26.735 Atomic orbital electron populations 1.21392 0.90467 1.04740 1.04785 1.25195 0.96039 0.92925 0.94919 1.20415 0.99307 0.90200 0.99594 1.21350 1.00559 0.95494 0.95019 1.19032 0.94289 0.92550 0.95659 1.21739 1.28271 1.03826 1.03966 0.92197 1.25974 0.94929 0.98687 1.00399 1.70102 1.32381 1.18514 1.36411 0.85430 0.78084 0.78431 0.79289 1.18581 1.20208 1.20710 1.74475 1.26098 0.91996 1.15245 1.45370 1.06962 0.99860 1.77383 1.18526 0.88710 0.85048 0.91456 1.21591 1.02746 0.89233 1.09902 1.21562 0.91225 0.99814 0.92043 1.21864 0.93774 0.88718 1.13557 1.98362 1.73079 1.34182 1.97283 1.22743 1.00904 0.85207 0.92414 1.67416 1.07552 1.31105 1.19222 0.88056 0.88954 0.90504 0.88570 0.92171 0.94244 0.91257 0.98019 0.99421 0.92835 0.74735 0.80819 0.80513 0.81218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.46 71.24 0.67 -2.24 16 2 C 0.10 2.87 6.55 46.53 0.30 3.18 16 3 C -0.06 -1.84 5.60 29.85 0.17 -1.67 16 4 C -0.09 -3.39 5.03 30.59 0.15 -3.24 16 5 C 0.02 1.14 4.97 29.84 0.15 1.29 16 6 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 9 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 10 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 11 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 14 N -0.27 -8.53 10.96 -41.20 -0.45 -8.98 16 15 N -0.57 -13.80 6.26 -55.36 -0.35 -14.15 16 16 C 0.40 9.65 7.60 133.03 1.01 10.66 16 17 C -0.21 -3.26 9.94 22.50 0.22 -3.04 16 18 C -0.02 -0.29 9.97 22.46 0.22 -0.06 16 19 C -0.15 -2.67 6.34 22.43 0.14 -2.52 16 20 Cl -0.06 -0.91 28.99 -2.72 -0.08 -0.99 16 21 C 0.15 3.34 10.97 84.66 0.93 4.27 16 22 N -0.54 -15.51 9.91 -193.09 -1.91 -17.42 16 23 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 1.77 6.91 -2.39 -0.02 1.76 16 25 H 0.08 1.16 6.31 -2.39 -0.02 1.15 16 26 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 27 H 0.06 2.22 8.11 -2.39 -0.02 2.20 16 28 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.07 2.49 7.01 -2.39 -0.02 2.47 16 30 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.41 6.89 6.38 -213.31 -1.36 5.53 16 34 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -71.89 326.92 3.93 -67.97 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -0.27 Total: 7.46 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 4.67 Total: -23.49 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -2.43 Total: -97.35 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -71.89 3.93 -67.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853434354.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.585 kcal (2) G-P(sol) polarization free energy of solvation -71.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds