Wall clock time and date at job start Fri Apr 10 2020 14:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46983 * 2 1 4 4 C 1.46502 * 119.99926 * 270.00143 * 3 2 1 5 5 C 1.50704 * 109.46930 * 269.99698 * 4 3 2 6 6 H 1.08000 * 120.00123 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99554 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00674 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99603 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47289 * 60.00032 * 9 7 5 11 11 H 1.48503 * 109.47091 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46962 * 299.99891 * 9 7 5 13 13 C 1.38404 * 119.99841 * 89.99830 * 3 2 1 14 14 N 1.32507 * 119.20790 * 179.97438 * 13 3 2 15 15 C 1.32378 * 120.71650 * 180.02562 * 14 13 3 16 16 Cl 1.73591 * 120.41982 * 180.02562 * 15 14 13 17 17 C 1.38828 * 119.16078 * 0.02562 * 15 14 13 18 18 C 1.38483 * 118.55003 * 359.97438 * 17 15 14 19 19 C 1.50706 * 120.39245 * 180.02562 * 18 17 15 20 20 C 1.53002 * 117.49668 * 85.00274 * 19 18 17 21 21 C 1.53000 * 60.02940 * 252.51929 * 20 19 18 22 22 N 1.32329 * 119.21380 * 0.27665 * 18 17 15 23 23 H 1.09008 * 109.47286 * 299.99778 * 1 2 3 24 24 H 1.08997 * 109.47456 * 60.00172 * 1 2 3 25 25 H 1.09004 * 109.47212 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47419 * 240.00252 * 2 1 3 27 27 H 1.08997 * 109.47456 * 119.99828 * 2 1 3 28 28 H 1.08993 * 109.47215 * 29.99869 * 4 3 2 29 29 H 1.08997 * 109.46765 * 149.99756 * 4 3 2 30 30 H 0.96995 * 120.00657 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.72289 * 180.02562 * 17 15 14 32 32 H 1.09000 * 115.55924 * 230.68680 * 19 18 17 33 33 H 1.09002 * 117.49918 * 145.01964 * 20 19 18 34 34 H 1.09002 * 117.49754 * 0.02562 * 20 19 18 35 35 H 1.09008 * 117.49673 * 107.47884 * 21 20 19 36 36 H 1.08999 * 117.49942 * 252.47315 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1492 2.3906 -2.8774 8 7 3.3496 3.1275 -3.6171 9 14 5.9133 2.0966 -3.4170 10 1 6.1402 0.6400 -3.5954 11 1 6.1612 2.7977 -4.7024 12 1 6.8411 2.6189 -2.3819 13 6 2.2489 2.0337 1.1986 14 7 2.6910 3.2827 1.1804 15 6 2.9220 3.9348 2.3090 16 17 3.5005 5.5711 2.2760 17 6 2.6958 3.2934 3.5193 18 6 2.2338 1.9881 3.5004 19 6 1.9737 1.2526 4.7898 20 6 0.6110 1.4544 5.4557 21 6 1.8623 2.0862 6.0688 22 7 2.0281 1.3926 2.3367 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5816 1.6878 -2.0283 29 1 2.0953 3.1410 -1.1384 30 1 3.6755 3.5179 -4.4429 31 1 2.8755 3.8017 4.4551 32 1 2.4318 0.2668 4.8695 33 1 0.1727 0.6013 5.9735 34 1 -0.0975 2.1187 4.9609 35 1 1.9773 3.1663 5.9771 36 1 2.2470 1.6490 6.9902 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166592207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:21 Heat of formation + Delta-G solvation = 61.168626 kcal Electronic energy + Delta-G solvation = -19680.584962 eV Core-core repulsion = 16612.331860 eV Total energy + Delta-G solvation = -3068.253101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.05919 -38.74421 -38.06937 -37.29548 -34.94030 -34.22347 -32.54414 -31.28094 -28.68391 -26.34112 -25.26878 -24.74123 -23.20085 -22.72404 -21.21653 -18.87107 -18.70700 -18.33184 -17.07036 -16.61479 -16.45849 -16.12186 -15.74448 -15.56631 -15.11555 -14.69228 -14.45767 -13.86154 -13.47781 -13.26152 -13.16916 -12.99007 -12.73571 -12.58163 -12.45364 -12.30827 -12.19665 -12.15399 -11.84095 -11.73361 -11.69111 -11.31854 -11.00233 -10.69455 -10.62989 -10.09892 -8.81960 -8.16875 -6.34658 0.01469 0.18933 0.61216 1.35547 1.38564 1.46032 1.90699 2.38078 2.71239 2.92517 3.08827 3.14575 3.64139 3.80545 3.98019 4.11361 4.17557 4.28246 4.33510 4.39063 4.42198 4.59097 4.82858 4.88385 4.94331 5.02935 5.06805 5.15991 5.20553 5.30410 5.32847 5.34444 5.63604 5.93584 5.99649 6.10137 6.58962 6.73407 7.27707 7.39412 8.85477 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.005847 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.670475 B = 4787.836390 C = 5881.434578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.126 3.874 3 N -0.570 5.570 4 C 0.278 3.722 5 C -0.536 4.536 6 H 0.044 0.956 7 C 0.017 3.983 8 N -0.924 5.924 9 Si 0.960 3.040 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.575 3.425 14 N -0.595 5.595 15 C 0.251 3.749 16 Cl -0.022 7.022 17 C -0.281 4.281 18 C 0.253 3.747 19 C -0.128 4.128 20 C -0.152 4.152 21 C -0.147 4.147 22 N -0.574 5.574 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.021 0.979 29 H 0.015 0.985 30 H 0.267 0.733 31 H 0.180 0.820 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 -3.210 19.004 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.004 3.996 3 N -0.282 5.282 4 C 0.156 3.844 5 C -0.575 4.575 6 H 0.062 0.938 7 C -0.183 4.183 8 N -0.563 5.563 9 Si 0.785 3.215 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.205 1.205 13 C 0.220 3.780 14 N -0.321 5.321 15 C 0.076 3.924 16 Cl 0.006 6.994 17 C -0.309 4.309 18 C 0.104 3.896 19 C -0.147 4.147 20 C -0.190 4.190 21 C -0.184 4.184 22 N -0.298 5.298 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.197 0.803 32 H 0.151 0.849 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.487 -3.566 17.671 18.577 hybrid contribution 1.181 0.915 -0.417 1.551 sum -3.306 -2.651 17.253 17.766 Atomic orbital electron populations 1.22017 0.94733 1.03104 1.00882 1.21482 0.95032 0.80294 1.02829 1.46906 1.65237 1.13927 1.02152 1.18802 0.95102 0.92001 0.78451 1.21539 0.97611 1.31868 1.06461 0.93807 1.25693 1.01828 0.94482 0.96288 1.70019 1.37548 1.34003 1.14758 0.85583 0.79659 0.78784 0.77455 1.18978 1.20122 1.20519 1.19224 0.87494 0.84157 0.87088 1.67215 1.22317 1.10509 1.32089 1.22000 0.92227 0.88478 0.89712 1.98384 1.86115 1.16254 1.98605 1.22198 1.12624 0.97666 0.98376 1.21076 0.86462 0.89655 0.92439 1.20838 1.05093 1.01192 0.87575 1.23048 0.89955 1.04010 1.01938 1.23276 1.00122 1.00011 0.95015 1.67738 1.26244 1.38553 0.97285 0.93526 0.93966 0.88810 0.90798 0.89687 0.96114 0.96651 0.92397 0.80286 0.84885 0.85944 0.89762 0.87657 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 10.24 71.98 0.74 -3.85 16 2 C 0.13 4.66 6.13 86.38 0.53 5.19 16 3 N -0.57 -26.32 2.56 -715.21 -1.83 -28.14 16 4 C 0.28 15.16 5.16 85.63 0.44 15.61 16 5 C -0.54 -31.19 9.39 25.60 0.24 -30.95 16 6 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 7 C 0.02 0.96 5.46 84.65 0.46 1.42 16 8 N -0.92 -55.65 13.29 21.44 0.28 -55.36 16 9 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 10 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 C 0.58 25.75 8.17 261.49 2.14 27.88 16 14 N -0.60 -27.81 9.11 -188.79 -1.72 -29.53 16 15 C 0.25 9.47 7.33 84.75 0.62 10.09 16 16 Cl -0.02 -0.73 29.15 -2.72 -0.08 -0.81 16 17 C -0.28 -8.35 9.23 22.47 0.21 -8.14 16 18 C 0.25 7.62 6.49 42.54 0.28 7.90 16 19 C -0.13 -2.57 6.25 -11.51 -0.07 -2.64 16 20 C -0.15 -2.34 10.23 30.60 0.31 -2.02 16 21 C -0.15 -1.89 9.83 30.62 0.30 -1.59 16 22 N -0.57 -21.48 9.05 -186.10 -1.68 -23.16 16 23 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.07 2.76 8.07 -2.39 -0.02 2.74 16 27 H 0.08 2.95 7.33 -2.39 -0.02 2.93 16 28 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 29 H 0.02 0.94 7.33 -2.39 -0.02 0.92 16 30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.18 3.84 6.38 -2.91 -0.02 3.82 16 32 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 1.30 6.47 -2.38 -0.02 1.29 16 36 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -69.40 324.70 4.28 -65.12 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.08 Total: 5.52 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.20 Total: 18.89 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -4.95 Total: -136.20 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -69.40 4.28 -65.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.284 kcal (2) G-P(sol) polarization free energy of solvation -69.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds